This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3dpl
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| + | |||
==Structural Insights into NEDD8 Activation of Cullin-RING Ligases: Conformational Control of Conjugation.== | ==Structural Insights into NEDD8 Activation of Cullin-RING Ligases: Conformational Control of Conjugation.== | ||
<StructureSection load='3dpl' size='340' side='right' caption='[[3dpl]], [[Resolution|resolution]] 2.60Å' scene=''> | <StructureSection load='3dpl' size='340' side='right' caption='[[3dpl]], [[Resolution|resolution]] 2.60Å' scene=''> | ||
| Line 5: | Line 6: | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CUL5, VACM1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN]), RBX1, RNF75, ROC1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr> | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CUL5, VACM1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN]), RBX1, RNF75, ROC1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr> | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dpl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dpl OCA], [http://pdbe.org/3dpl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dpl RCSB], [http://www.ebi.ac.uk/pdbsum/3dpl PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dpl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dpl OCA], [http://pdbe.org/3dpl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dpl RCSB], [http://www.ebi.ac.uk/pdbsum/3dpl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3dpl ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| Line 13: | Line 14: | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dp/3dpl_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dp/3dpl_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
| Line 39: | Line 40: | ||
[[Category: Duda, D M]] | [[Category: Duda, D M]] | ||
[[Category: Schulman, B A]] | [[Category: Schulman, B A]] | ||
| + | [[Category: Acetylation]] | ||
[[Category: Cullin]] | [[Category: Cullin]] | ||
| + | [[Category: Cytoplasm]] | ||
[[Category: Dna damage]] | [[Category: Dna damage]] | ||
[[Category: Dna repair]] | [[Category: Dna repair]] | ||
| Line 49: | Line 52: | ||
[[Category: Receptor]] | [[Category: Receptor]] | ||
[[Category: Ubiquitin]] | [[Category: Ubiquitin]] | ||
| + | [[Category: Ubl conjugation]] | ||
[[Category: Ubl conjugation pathway]] | [[Category: Ubl conjugation pathway]] | ||
| + | [[Category: Zinc]] | ||
[[Category: Zinc-finger]] | [[Category: Zinc-finger]] | ||
Revision as of 10:00, 14 November 2018
Structural Insights into NEDD8 Activation of Cullin-RING Ligases: Conformational Control of Conjugation.
| |||||||||||
Categories: Human | Duda, D M | Schulman, B A | Acetylation | Cullin | Cytoplasm | Dna damage | Dna repair | Host-virus interaction | Ligase | Metal-binding | Nedd8 | Nucleus | Receptor | Ubiquitin | Ubl conjugation | Ubl conjugation pathway | Zinc | Zinc-finger

