Sandbox Reserved 1476
From Proteopedia
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The structure at right can be organized into regions and domains. There are three main regions: N-terminal region, catalytic region, and C-terminal glucan binding region.<ref name="Ito" /> The domains are more complex. There are five total domains; however, only four are visible in this crystal structure. Each domain consists of an N-terminal and C-terminal portion of the polypeptide chain, except Domain C, which is located at the bottom of the enzyme.<ref name="Ito" /> Following the polypeptide chain from N-terminus to C-terminus would pass through the domains in the following order: V, IV, B, A, C, A, B, IV, V.<ref name="Leemhuis" /> <u>CAN I ADD THE IMAGE FROM LEEMHUIS COMPARISON?</u> A high degree of structural similarity exists within the GH70 family enzymes.<ref name="Leemhuis" /> | The structure at right can be organized into regions and domains. There are three main regions: N-terminal region, catalytic region, and C-terminal glucan binding region.<ref name="Ito" /> The domains are more complex. There are five total domains; however, only four are visible in this crystal structure. Each domain consists of an N-terminal and C-terminal portion of the polypeptide chain, except Domain C, which is located at the bottom of the enzyme.<ref name="Ito" /> Following the polypeptide chain from N-terminus to C-terminus would pass through the domains in the following order: V, IV, B, A, C, A, B, IV, V.<ref name="Leemhuis" /> <u>CAN I ADD THE IMAGE FROM LEEMHUIS COMPARISON?</u> A high degree of structural similarity exists within the GH70 family enzymes.<ref name="Leemhuis" /> | ||
===Catalytic Domain=== | ===Catalytic Domain=== | ||
| - | Domain A is regarded as the catalytic domain.<ref name="Ito" /> Within it, exists a highly conserved <scene name='80/800655/Catalytic_triad_2/1'>catalytic triad</scene>, which includes two aspartic acid residues and a general acid/base glutamate.<ref name="Ito" /> | + | Domain A is regarded as the catalytic domain.<ref name="Ito" /> Within it, exists a highly conserved <scene name='80/800655/Catalytic_triad_2/1'>catalytic triad</scene>, which includes two aspartic acid residues and a general acid/base glutamate.<ref name="Ito" /> A calcium ion is also bound to help stabilize the formation of the catalytic domain.<ref name="Ito" /> |
| + | ===Supersecondary Structure=== | ||
| + | This enzyme features two well-known motifs. Domain A consists of a TIM barrel.<ref name="Ito" /> It is composed of a ring of beta strands surrounded by a ring of alpha helices. Domain C contains a greek key motif, which is four antiparallel beta strands that form a sheet.<ref name="Leemhuis" /> | ||
Revision as of 01:31, 3 December 2018
| This Sandbox is Reserved from November 5 2018 through January 1, 2019 for use in the course "CHEM 4923: Senior Project taught by Christina R. Bourne at the University of Oklahoma, Norman, USA. This reservation includes Sandbox Reserved 1471 through Sandbox Reserved 1478. |
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PDB ID 3AIE
This enzyme is a glucansucrase from Streptococcus mutans.[1]. These enzymes are large and extracellularly expressed by few other bacterial species.[2]. Their main function is to catalyze the production of glucose polymers from sucrose substrates.[1]. These polymers comprise the dental plaque that promotes tooth decay in humans. For this reason, knowledge of the structure, genome, and proteome of this enzyme is critical for the development of an inhibitor in an effort to reduce the prevalence of cavities and periodontal disease.
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