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From Proteopedia
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== '''Coagulation Factor VIII (3cdz)''' == | == '''Coagulation Factor VIII (3cdz)''' == | ||
<StructureSection load='3cdz' size='340' side='right' caption='The human coagulation factor VIII' scene=''> | <StructureSection load='3cdz' size='340' side='right' caption='The human coagulation factor VIII' scene=''> | ||
| - | '''The human Factor VIII''', also known as anti-hemophilic factor (AHF), is an essential blood-clotting protein <ref name="wikipedia">Wikipedia, Factor VIII (https://en.wikipedia.org/wiki/Factor_VIII)</ref>. It consists of 2332 residues <sup>[9]</sup>, whose gene is located on the X chromosome <sup>[4,8]</sup>. | + | '''The human Factor VIII''', also known as anti-hemophilic factor (AHF), is an essential blood-clotting protein <ref name="wikipedia">Wikipedia, Factor VIII (https://en.wikipedia.org/wiki/Factor_VIII)</ref>. It consists of 2332 residues <ref name="Ngo">PMID: 18400180</ref> <sup>[9]</sup>, whose gene is located on the X chromosome <sup>[4,8]</sup>. |
| - | Factor VIII is produced inside the liver (by the sinusoidal cells) and outside (by the endothelial cells) and acts in the intrinsic pathway of blood coagulation <ref name="wikipedia" /> <sup>[8]</sup>. It is actually the lack or the deficiency of the factor VIII (which is a plasma glycoprotein) that causes a bleeding disorder: hemophilia A <sup>[9]</sup>. | + | Factor VIII is produced inside the liver (by the sinusoidal cells) and outside (by the endothelial cells) and acts in the intrinsic pathway of blood coagulation <ref name="wikipedia" /> <sup>[8]</sup>. It is actually the lack or the deficiency of the factor VIII (which is a plasma glycoprotein) that causes a bleeding disorder: hemophilia A <ref name="Ngo" /> <sup>[9]</sup>. |
Factor VIII is much studied in order to find a cure for hemophilia A (also written as HEMA), for instance by designing mimicking factors <sup>[12]</sup>. | Factor VIII is much studied in order to find a cure for hemophilia A (also written as HEMA), for instance by designing mimicking factors <sup>[12]</sup>. | ||
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====The coagulation process==== | ====The coagulation process==== | ||
| - | In response to an injury, the coagulation factor VIII is separated from von Willebrand factor. The active form is called “Factor VIIIa” and is obtained by a proteolytic cleavage of the B-domain of Factor VIII by thrombin <sup>[8,9]</sup>. Then the two remaining chains are linked together thanks to a metal link (probably calcium ion) <sup>[9]</sup>. | + | In response to an injury, the coagulation factor VIII is separated from von Willebrand factor. The active form is called “Factor VIIIa” and is obtained by a proteolytic cleavage of the B-domain of Factor VIII by thrombin <sup>[8,9]</sup>. Then the two remaining chains are linked together thanks to a metal link (probably calcium ion) <ref name="Ngo" /> <sup>[9]</sup>. |
| - | Thus the factor VIIIa is a non-covalent dimer <sup>[9]</sup>. | + | Thus the factor VIIIa is a non-covalent dimer <ref name="Ngo" /> <sup>[9]</sup>. |
It is the catalyst for the activation reaction of the factor X (to [[Factor Xa]]) by activated [[Factor IX]]a in the presence of calcium ion and phospholipids. | It is the catalyst for the activation reaction of the factor X (to [[Factor Xa]]) by activated [[Factor IX]]a in the presence of calcium ion and phospholipids. | ||
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Factor VIII protein is composed of six globular domains: A<sub>1</sub>-A<sub>2</sub>-B-A<sub>3</sub>-C<sub>1</sub>-C<sub>2</sub> and contains one Ca<sup>2+</sup> and two Cu<sup>2+</sup> ions. It has a molecular weight of 330 kDa [1,9,14]. | Factor VIII protein is composed of six globular domains: A<sub>1</sub>-A<sub>2</sub>-B-A<sub>3</sub>-C<sub>1</sub>-C<sub>2</sub> and contains one Ca<sup>2+</sup> and two Cu<sup>2+</sup> ions. It has a molecular weight of 330 kDa [1,9,14]. | ||
| - | The three A domains are homologous to the A domains of the copper-binding protein ceruloplasmin <sup>[8,14]</sup>. Together, they form a triangular heterotrimer where the A<sub>1</sub> and A<sub>3</sub> domains interact with the C<sub>2</sub> and C<sub>1</sub> domains, respectively <sup>[9]</sup>. | + | The three A domains are homologous to the A domains of the copper-binding protein ceruloplasmin <sup>[8,14]</sup>. Together, they form a triangular heterotrimer where the A<sub>1</sub> and A<sub>3</sub> domains interact with the C<sub>2</sub> and C<sub>1</sub> domains, respectively <ref name="Ngo" /> <sup>[9]</sup>. |
| - | The C domains belong to the phospholipid-binding discoidin domain family <ref name="wikipedia" /> <sup>[8]</sup>. They are adjacent at the base of the triangular heterotrimer. Moreover, C<sub>1</sub> and C<sub>2</sub> domains are structurally homologous and they have the ability to bind the membrane. Indeed, both C domain protrude three β-hairpin loops with hydrophobic and basic residues in the same direction. Thanks to these loops the factor VIII might interact with the phospholipid bilayer. <sup>[9]</sup> | + | The C domains belong to the phospholipid-binding discoidin domain family <ref name="wikipedia" /> <sup>[8]</sup>. They are adjacent at the base of the triangular heterotrimer. Moreover, C<sub>1</sub> and C<sub>2</sub> domains are structurally homologous and they have the ability to bind the membrane. Indeed, both C domain protrude three β-hairpin loops with hydrophobic and basic residues in the same direction. Thanks to these loops the factor VIII might interact with the phospholipid bilayer. <ref name="Ngo" /> <sup>[9]</sup> |
| - | Factor VIIIa is obtained by cleavage and release of the B domain <sup>[8,9,11]</sup>. Although factor VIIIa can be formed from at least two cleavages involving Arg372 and Arg1689, fully factor VIIIa is obtained by a third cleavage at Arg740 <sup>[9]</sup>. | + | Factor VIIIa is obtained by cleavage and release of the B domain <sup>[8,9,11]</sup>. Although factor VIIIa can be formed from at least two cleavages involving Arg372 and Arg1689, fully factor VIIIa is obtained by a third cleavage at Arg740 <ref name="Ngo" /> <sup>[9]</sup>. |
The two chain that result are a heavy and a light chains <sup>[2,9,14]</sup>. | The two chain that result are a heavy and a light chains <sup>[2,9,14]</sup>. | ||
| - | The <scene name='80/802656/Heavy_chain/4'>heavy chain</scene> has a various size (90 or 120 kDa) <sup>[3,8]</sup>. It consists of the A<sub>1</sub>-A<sub>2</sub> domains <sup>[3,8,14]</sup>. Both A<sub>1</sub> and A<sub>2</sub> domains are built up of two connected β barrels <sup>[9]</sup>. | + | The <scene name='80/802656/Heavy_chain/4'>heavy chain</scene> has a various size (90 or 120 kDa) <sup>[3,8]</sup>. It consists of the A<sub>1</sub>-A<sub>2</sub> domains <sup>[3,8,14]</sup>. Both A<sub>1</sub> and A<sub>2</sub> domains are built up of two connected β barrels <ref name="Ngo" /> <sup>[9]</sup>. |
| - | The <scene name='80/802656/Light_chain/2'>light chain</scene> has a molecular weight of 80 kDa and is composed of 684 amino acids <sup>[3]</sup>. It contains two domains: a unique A domain of 371 amino acids and a duplicated C domain of 153 amino acids and 160 amino acids, respectively <sup>[3]</sup>. These domains are ranked in the following order A<sub>3</sub>-C<sub>1</sub>-C<sub>2</sub> <sup>[3,8]</sup>. It is composed of 42 % irregular structure, 36 % β-strands, and 22 % α-helices <sup>[3]</sup>. The C<sub>1</sub> and C<sub>2</sub> domains are defined by a distorted β barrel, while A<sub>3</sub>, as well as A<sub>1</sub> and A<sub>2</sub>, is composed of two connected β barrels <sup>[9]</sup>. This chain also contains of the major binding site of von Willebrand Factor at its N-terminus <sup>[3]</sup>. | + | The <scene name='80/802656/Light_chain/2'>light chain</scene> has a molecular weight of 80 kDa and is composed of 684 amino acids <sup>[3]</sup>. It contains two domains: a unique A domain of 371 amino acids and a duplicated C domain of 153 amino acids and 160 amino acids, respectively <sup>[3]</sup>. These domains are ranked in the following order A<sub>3</sub>-C<sub>1</sub>-C<sub>2</sub> <sup>[3,8]</sup>. It is composed of 42 % irregular structure, 36 % β-strands, and 22 % α-helices <sup>[3]</sup>. The C<sub>1</sub> and C<sub>2</sub> domains are defined by a distorted β barrel, while A<sub>3</sub>, as well as A<sub>1</sub> and A<sub>2</sub>, is composed of two connected β barrels <ref name="Ngo" /> <sup>[9]</sup>. This chain also contains of the major binding site of von Willebrand Factor at its N-terminus <sup>[3]</sup>. |
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====Ligands==== | ====Ligands==== | ||
Alpha-D-mannose, calcium ion (Ca<sup>2+</sup>), copper ion (Cu<sup>2+</sup>) and N-acetl-D-glucosamine are the four ligands the factor VIII is able to bind to <sup>[2]</sup>. | Alpha-D-mannose, calcium ion (Ca<sup>2+</sup>), copper ion (Cu<sup>2+</sup>) and N-acetl-D-glucosamine are the four ligands the factor VIII is able to bind to <sup>[2]</sup>. | ||
| - | In factor VIII there are two copper ions and their binding sites are located internally within the <scene name='80/802656/A3cu/1'>A3</scene> and the <scene name='80/802656/A1/1'> A1 </scene> domain. In the latter, there is another ligand, a <scene name='80/802656/A1ca/1'>single calcium ion</scene>, bound to its binding site <sup>[9]</sup>. | + | In factor VIII there are two copper ions and their binding sites are located internally within the <scene name='80/802656/A3cu/1'>A3</scene> and the <scene name='80/802656/A1/1'> A1 </scene> domain. In the latter, there is another ligand, a <scene name='80/802656/A1ca/1'>single calcium ion</scene>, bound to its binding site <ref name="Ngo" /> <sup>[9]</sup>. |
== Disease == | == Disease == | ||
| - | Hemophilia is a genetic disorder characterized by a permanent tendency to hemorrhage because of a lack of blood coagulation <sup>[9]</sup>. | + | Hemophilia is a genetic disorder characterized by a permanent tendency to hemorrhage because of a lack of blood coagulation <ref name="Ngo" /> <sup>[9]</sup>. |
There are different types of hemophilia: A or B, caused by a deficiency of two different factors. | There are different types of hemophilia: A or B, caused by a deficiency of two different factors. | ||
Hemophilia A (HEMA), is four times as common as hemophilia B. | Hemophilia A (HEMA), is four times as common as hemophilia B. | ||
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This deficiency in factor VIII clotting activity results in prolonged oozing after injuries, tooth extractions, or surgery, and delayed or recurrent bleeding prior to complete wound healing <sup>[6]</sup>. | This deficiency in factor VIII clotting activity results in prolonged oozing after injuries, tooth extractions, or surgery, and delayed or recurrent bleeding prior to complete wound healing <sup>[6]</sup>. | ||
| - | Although hemophilia A is usually an inherited disease and therefore runs in families <sup>[7]</sup>, about one-third of people with the disease are caused by a spontaneous mutation [7] such as misense or nonsense mutations, gene deletions or inversions <sup>[9]</sup>. | + | Although hemophilia A is usually an inherited disease and therefore runs in families <sup>[7]</sup>, about one-third of people with the disease are caused by a spontaneous mutation [7] such as misense or nonsense mutations, gene deletions or inversions <ref name="Ngo" /> <sup>[9]</sup>. |
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Coagulation Factor VIII (3cdz)
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References
↑[1] UniProtKB – P00451 (FA8_HUMAN) (https://www.uniprot.org/uniprot/P00451)
↑[2] Protein Database: 3CDZ. 2008 (http://www.rcsb.org/structure/3CDZ)
↑[3] Bihoreau N1, Fontaine-Aupart MP, Lehegarat A, Desmadril M, Yon JM. First determination of the secondary structure of purified factor VIII light chain. Biochem J. 1992 Nov 15; 288 ( Pt 1):35-40. PMID: 1445279.
↑[4] S. E. Antonarakis. Molecular genetics of coagulation factor VIII gene and haemophilia A. Thromb Haemost. 1995 Jul; 74(1):322-8. PMID: 8578479
↑[5] Rosendaal, F. R. (2001). Definitions in hemophilia, Recommendation of the scientific subcommittee on factor VIII and factor IX of the scientific and standardization committee of the International Society on Thrombosis and Haemostasis Factor VII and Factor IX Subcommittee.
↑[6] Barbara A Konkle, MD, Haley Huston, BS, and Shelley Nakaya Fletcher, BS. Hemophilia A, Synonym: Factor VIII Deficiency. Gene Rewiews. 2017 Jun 22.
↑[7] Srivastava, A., Brewer, A. K., Mauser‐Bunschoten, E. P., Key, N. S., Kitchen, S., Llinas, A., ... & Street, A. (2013). Guidelines for the management of hemophilia. Haemophilia, 19(1), e1-e47.
↑[8] Wikipedia, Factor VIII (https://en.wikipedia.org/wiki/Factor_VIII)
↑[9] Ngo JC, Huang M, Roth DA, Furie BC, Furie B. Crystal structure of human factor VIII: implications for the formation of the factor IXa-factor VIIIa complex. Structure. 2008 Apr; 16(4):597-606. doi: 10.1016/j.str.2008.03.001. PMID: 18400180
↑[10] Patek, A. J., & Taylor, F. H. L. (1937). Hemophilia. II. Some properties of a substance obtained from normal human plasma effective in accelerating the coagulation of hemophilic blood. The Journal of clinical investigation, 16(1), 113-124.
↑ [11] Toole, J. J., Pittman, D. D., Orr, E. C., Murtha, P., Wasley, L. C., & Kaufman, R. J. (1986). A large region (approximately equal to 95 kDa) of human factor VIII is dispensable for in vitro procoagulant activity. Proceedings of the National Academy of Sciences, 83(16), 5939-5942.
↑ [12] Ragni, M. V. (2018). Mimicking Factor VIII to Manage the Factor VIII–Deficient State. The New England journal of medicine, 379(9), 880-882.
↑ [13] Dallman, P. R., & Pool, J. G. (1968). Treatment of hemophilia with factor VIII concentrates. New England Journal of Medicine, 278(4), 199-202.
↑ [14] El Khorassani, M., & Benkirane Agoumi, N. (1996). Le facteur VIII coagulant. Médecine du Maghreb, 55, 11-13.
↑ [15] Ljung, R. C. (2018). Prevention and management of bleeding episodes in children with hemophilia. Pediatric Drugs, 1-10.
- ↑ 1.0 1.1 1.2 1.3 Wikipedia, Factor VIII (https://en.wikipedia.org/wiki/Factor_VIII)
- ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 Ngo JC, Huang M, Roth DA, Furie BC, Furie B. Crystal structure of human factor VIII: implications for the formation of the factor IXa-factor VIIIa complex. Structure. 2008 Apr;16(4):597-606. PMID:18400180 doi:10.1016/j.str.2008.03.001
