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== Structure ==
== Structure ==
====Primary Structure====
====Primary Structure====
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In humans, factor VIII is encoded by the F8 gene <ref name="Ngo" /> <ref name="pdb">UniProtKB – P00451 (FA8_HUMAN) (https://www.uniprot.org/uniprot/P00451)</ref> <sup>[1,2,9]</sup>. This gene maps on the most distant band of the long arm of the X-chromosome (region Xq28). It is 186 kb in size (0.1 % of the whole size of the chromosome) and contains 26 exons <ref name="Antonarakis" /> <sup>[4]</sup>.
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In humans, factor VIII is encoded by the F8 gene <ref name="Ngo" /> <ref name="uni">UniProtKB – P00451 (FA8_HUMAN) (https://www.uniprot.org/uniprot/P00451)</ref> <ref name="pdb">Protein Database: 3CDZ. 2008 (http://www.rcsb.org/structure/3CDZ) </ref> <sup>[1,2,9]</sup>. This gene maps on the most distant band of the long arm of the X-chromosome (region Xq28). It is 186 kb in size (0.1 % of the whole size of the chromosome) and contains 26 exons <ref name="Antonarakis" /> <sup>[4]</sup>.
====Secondary Structure====
====Secondary Structure====
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Factor VIII protein is composed of six globular domains: A<sub>1</sub>-A<sub>2</sub>-B-A<sub>3</sub>-C<sub>1</sub>-C<sub>2</sub> and contains one Ca<sup>2+</sup> and two Cu<sup>2+</sup> ions. It has a molecular weight of 330 kDa <ref name="Ngo" /><ref name="El" /><ref name"pdb" /> [1,9,14].
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Factor VIII protein is composed of six globular domains: A<sub>1</sub>-A<sub>2</sub>-B-A<sub>3</sub>-C<sub>1</sub>-C<sub>2</sub> and contains one Ca<sup>2+</sup> and two Cu<sup>2+</sup> ions. It has a molecular weight of 330 kDa <ref name="Ngo" /><ref name="El" /><ref name="uni" /> [1,9,14].
The three A domains are homologous to the A domains of the copper-binding protein ceruloplasmin <ref name="wikipedia" /><ref name="El" /> <sup>[8,14]</sup>. Together, they form a triangular heterotrimer where the A<sub>1</sub> and A<sub>3</sub> domains interact with the C<sub>2</sub> and C<sub>1</sub> domains, respectively <ref name="Ngo" /> <sup>[9]</sup>.
The three A domains are homologous to the A domains of the copper-binding protein ceruloplasmin <ref name="wikipedia" /><ref name="El" /> <sup>[8,14]</sup>. Together, they form a triangular heterotrimer where the A<sub>1</sub> and A<sub>3</sub> domains interact with the C<sub>2</sub> and C<sub>1</sub> domains, respectively <ref name="Ngo" /> <sup>[9]</sup>.
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Factor VIIIa is obtained by cleavage and release of the B domain <ref name="wikipedia" /><ref name="Ngo" /> <sup>[8,9,11]</sup>. Although factor VIIIa can be formed from at least two cleavages involving Arg372 and Arg1689, fully factor VIIIa is obtained by a third cleavage at Arg740 <ref name="Ngo" /> <sup>[9]</sup>.
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Factor VIIIa is obtained by cleavage and release of the B domain <ref name="wikipedia" /><ref name="Ngo" /><ref name="toole">Toole, J. J., Pittman, D. D., Orr, E. C., Murtha, P., Wasley, L. C., & Kaufman, R. J. (1986). A large region (approximately equal to 95 kDa) of human factor VIII is dispensable for in vitro procoagulant activity. Proceedings of the National Academy of Sciences, 83(16), 5939-5942.</ref> <sup>[8,9,11]</sup>. Although factor VIIIa can be formed from at least two cleavages involving Arg372 and Arg1689, fully factor VIIIa is obtained by a third cleavage at Arg740 <ref name="Ngo" /> <sup>[9]</sup>.
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The two chain that result are a heavy and a light chains <ref name="Ngo" /><ref name="El" /> <sup>[2,9,14]</sup>.
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The two chain that result are a heavy and a light chains <ref name="Ngo" /><ref name="El" /><ref name="pdb" /> <sup>[2,9,14]</sup>.
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The <scene name='80/802656/Heavy_chain/4'>heavy chain</scene> has a various size (90 or 120 kDa) <ref name="wikipedia" /> <sup>[3,8]</sup>. It consists of the A<sub>1</sub>-A<sub>2</sub> domains <ref name="wikipedia" /><ref name="El" /> <sup>[3,8,14]</sup>. Both A<sub>1</sub> and A<sub>2</sub> domains are built up of two connected β barrels <ref name="Ngo" /> <sup>[9]</sup>.
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The <scene name='80/802656/Heavy_chain/4'>heavy chain</scene> has a various size (90 or 120 kDa) <ref name="wikipedia" /><ref name="Binhoreau">PMID: 1445279</ref> <sup>[3,8]</sup>. It consists of the A<sub>1</sub>-A<sub>2</sub> domains <ref name="wikipedia" /><ref name="El" /><ref name="Binhoreau" /> <sup>[3,8,14]</sup>. Both A<sub>1</sub> and A<sub>2</sub> domains are built up of two connected β barrels <ref name="Ngo" /> <sup>[9]</sup>.
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The <scene name='80/802656/Light_chain/2'>light chain</scene> has a molecular weight of 80 kDa and is composed of 684 amino acids <sup>[3]</sup>. It contains two domains: a unique A domain of 371 amino acids and a duplicated C domain of 153 amino acids and 160 amino acids, respectively <sup>[3]</sup>. These domains are ranked in the following order A<sub>3</sub>-C<sub>1</sub>-C<sub>2</sub> <ref name="wikipedia" /> <sup>[3,8]</sup>. It is composed of 42 % irregular structure, 36 % β-strands, and 22 % α-helices <sup>[3]</sup>. The C<sub>1</sub> and C<sub>2</sub> domains are defined by a distorted β barrel, while A<sub>3</sub>, as well as A<sub>1</sub> and A<sub>2</sub>, is composed of two connected β barrels <ref name="Ngo" /> <sup>[9]</sup>. This chain also contains of the major binding site of von Willebrand Factor at its N-terminus <sup>[3]</sup>.
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The <scene name='80/802656/Light_chain/2'>light chain</scene> has a molecular weight of 80 kDa and is composed of 684 amino acids <ref name="Binhoreau" /><sup>[3]</sup>. It contains two domains: a unique A domain of 371 amino acids and a duplicated C domain of 153 amino acids and 160 amino acids, respectively <ref name="Binhoreau" /><sup>[3]</sup>. These domains are ranked in the following order A<sub>3</sub>-C<sub>1</sub>-C<sub>2</sub> <ref name="wikipedia" /><ref name="Binhoreau" /> <sup>[3,8]</sup>. It is composed of 42 % irregular structure, 36 % β-strands, and 22 % α-helices <ref name="Binhoreau" /><sup>[3]</sup>. The C<sub>1</sub> and C<sub>2</sub> domains are defined by a distorted β barrel, while A<sub>3</sub>, as well as A<sub>1</sub> and A<sub>2</sub>, is composed of two connected β barrels <ref name="Ngo" /> <sup>[9]</sup>. This chain also contains of the major binding site of von Willebrand Factor at its N-terminus <ref name="Binhoreau" /><sup>[3]</sup>.
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Both chains are no covalently associated through to a calcium ion to form the active heterodimers <ref name="Ngo" /> <sup>[3,9]</sup>. This complex is the pro-coagulant factor VIIIa <ref name="wikipedia" /> <sup>[8]</sup>.
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Both chains are no covalently associated through to a calcium ion to form the active heterodimers <ref name="Ngo" /><ref name="Binhoreau" /> <sup>[3,9]</sup>. This complex is the pro-coagulant factor VIIIa <ref name="wikipedia" /> <sup>[8]</sup>.
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Such an association is essentialfor the functioning of the factor VIII <sup>[3]</sup>.
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Such an association is essentialfor the functioning of the factor VIII <ref name="Binhoreau" /><sup>[3]</sup>.
====Ligands====
====Ligands====
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Alpha-D-mannose, calcium ion (Ca<sup>2+</sup>), copper ion (Cu<sup>2+</sup>) and N-acetl-D-glucosamine are the four ligands the factor VIII is able to bind to <sup>[2]</sup>.
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Alpha-D-mannose, calcium ion (Ca<sup>2+</sup>), copper ion (Cu<sup>2+</sup>) and N-acetl-D-glucosamine are the four ligands the factor VIII is able to bind to <ref name="pdb" /> <sup>[2]</sup>.
In factor VIII there are two copper ions and their binding sites are located internally within the <scene name='80/802656/A3cu/1'>A3</scene> and the <scene name='80/802656/A1/1'> A1 </scene> domain. In the latter, there is another ligand, a <scene name='80/802656/A1ca/1'>single calcium ion</scene>, bound to its binding site <ref name="Ngo" /> <sup>[9]</sup>.
In factor VIII there are two copper ions and their binding sites are located internally within the <scene name='80/802656/A3cu/1'>A3</scene> and the <scene name='80/802656/A1/1'> A1 </scene> domain. In the latter, there is another ligand, a <scene name='80/802656/A1ca/1'>single calcium ion</scene>, bound to its binding site <ref name="Ngo" /> <sup>[9]</sup>.
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The main medication to treat hemophilia A is concentrated factor VIII protein, called “clotting factor”. Getting this “clotting factor” is therefore a major concern for hemophilia-affected people <sup>[7]</sup>.
The main medication to treat hemophilia A is concentrated factor VIII protein, called “clotting factor”. Getting this “clotting factor” is therefore a major concern for hemophilia-affected people <sup>[7]</sup>.
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Nowadays, recombinant coagulation factor VIII products, which are developed in a lab through the use of DNA technology <ref name="El" /> <sup>[11,14]</sup>. For instance, Toole and colleagues have created a biologically fully active factor with improved heterologous expression efficiency by deleting the B-domain from the native human factor VIII <sup>[11]</sup>.
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Nowadays, recombinant coagulation factor VIII products, which are developed in a lab through the use of DNA technology <ref name="El" /> <ref name="toole" /> <sup>[11,14]</sup>. For instance, Toole and colleagues have created a biologically fully active factor with improved heterologous expression efficiency by deleting the B-domain from the native human factor VIII <ref name="toole" /> <sup>[11]</sup>.

Revision as of 23:40, 11 January 2019

This Sandbox is Reserved from 06/12/2018, through 30/06/2019 for use in the course "Structural Biology" taught by Bruno Kieffer at the University of Strasbourg, ESBS. This reservation includes Sandbox Reserved 1480 through Sandbox Reserved 1543.
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Coagulation Factor VIII (3cdz)

The human coagulation factor VIII

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References

↑[1] UniProtKB – P00451 (FA8_HUMAN) (https://www.uniprot.org/uniprot/P00451)

↑[2] Protein Database: 3CDZ. 2008 (http://www.rcsb.org/structure/3CDZ)

↑[3] Bihoreau N1, Fontaine-Aupart MP, Lehegarat A, Desmadril M, Yon JM. First determination of the secondary structure of purified factor VIII light chain. Biochem J. 1992 Nov 15; 288 ( Pt 1):35-40. PMID: 1445279.

↑[4] S. E. Antonarakis. Molecular genetics of coagulation factor VIII gene and haemophilia A. Thromb Haemost. 1995 Jul; 74(1):322-8. PMID: 8578479

↑[5] Rosendaal, F. R. (2001). Definitions in hemophilia, Recommendation of the scientific subcommittee on factor VIII and factor IX of the scientific and standardization committee of the International Society on Thrombosis and Haemostasis Factor VII and Factor IX Subcommittee.

↑[6] Barbara A Konkle, MD, Haley Huston, BS, and Shelley Nakaya Fletcher, BS. Hemophilia A, Synonym: Factor VIII Deficiency. Gene Rewiews. 2017 Jun 22.

↑[7] Srivastava, A., Brewer, A. K., Mauser‐Bunschoten, E. P., Key, N. S., Kitchen, S., Llinas, A., ... & Street, A. (2013). Guidelines for the management of hemophilia. Haemophilia, 19(1), e1-e47.

↑[8] Wikipedia, Factor VIII (https://en.wikipedia.org/wiki/Factor_VIII)

↑[9] Ngo JC, Huang M, Roth DA, Furie BC, Furie B. Crystal structure of human factor VIII: implications for the formation of the factor IXa-factor VIIIa complex. Structure. 2008 Apr; 16(4):597-606. doi: 10.1016/j.str.2008.03.001. PMID: 18400180

↑[10] Patek, A. J., & Taylor, F. H. L. (1937). Hemophilia. II. Some properties of a substance obtained from normal human plasma effective in accelerating the coagulation of hemophilic blood. The Journal of clinical investigation, 16(1), 113-124.

↑ [11] Toole, J. J., Pittman, D. D., Orr, E. C., Murtha, P., Wasley, L. C., & Kaufman, R. J. (1986). A large region (approximately equal to 95 kDa) of human factor VIII is dispensable for in vitro procoagulant activity. Proceedings of the National Academy of Sciences, 83(16), 5939-5942.

↑ [12] Ragni, M. V. (2018). Mimicking Factor VIII to Manage the Factor VIII–Deficient State. The New England journal of medicine, 379(9), 880-882.

↑ [13] Dallman, P. R., & Pool, J. G. (1968). Treatment of hemophilia with factor VIII concentrates. New England Journal of Medicine, 278(4), 199-202.

↑ [14] El Khorassani, M., & Benkirane Agoumi, N. (1996). Le facteur VIII coagulant. Médecine du Maghreb, 55, 11-13.

↑ [15] Ljung, R. C. (2018). Prevention and management of bleeding episodes in children with hemophilia. Pediatric Drugs, 1-10.

  1. 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 Wikipedia, Factor VIII (https://en.wikipedia.org/wiki/Factor_VIII)
  2. 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 2.18 Ngo JC, Huang M, Roth DA, Furie BC, Furie B. Crystal structure of human factor VIII: implications for the formation of the factor IXa-factor VIIIa complex. Structure. 2008 Apr;16(4):597-606. PMID:18400180 doi:10.1016/j.str.2008.03.001
  3. 3.0 3.1 Antonarakis SE. Molecular genetics of coagulation factor VIII gene and hemophilia A. Thromb Haemost. 1995 Jul;74(1):322-8. PMID:8578479
  4. Ragni, M. V. (2018). Mimicking Factor VIII to Manage the Factor VIII–Deficient State. The New England journal of medicine, 379(9), 880-882.
  5. Patek, A. J., & Taylor, F. H. L. (1937). Hemophilia. II. Some properties of a substance obtained from normal human plasma effective in accelerating the coagulation of hemophilic blood. The Journal of clinical investigation, 16(1), 113-124.
  6. Dallman, P. R., & Pool, J. G. (1968). Treatment of hemophilia with factor VIII concentrates. New England Journal of Medicine, 278(4), 199-202.
  7. 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.8 El Khorassani, M., & Benkirane Agoumi, N. (1996). Le facteur VIII coagulant. Médecine du Maghreb, 55, 11-13.
  8. Ljung, R. C. (2018). Prevention and management of bleeding episodes in children with hemophilia. Pediatric Drugs, 1-10.
  9. 9.0 9.1 UniProtKB – P00451 (FA8_HUMAN) (https://www.uniprot.org/uniprot/P00451)
  10. 10.0 10.1 10.2 Protein Database: 3CDZ. 2008 (http://www.rcsb.org/structure/3CDZ)
  11. 11.0 11.1 11.2 Toole, J. J., Pittman, D. D., Orr, E. C., Murtha, P., Wasley, L. C., & Kaufman, R. J. (1986). A large region (approximately equal to 95 kDa) of human factor VIII is dispensable for in vitro procoagulant activity. Proceedings of the National Academy of Sciences, 83(16), 5939-5942.
  12. 12.0 12.1 12.2 12.3 12.4 12.5 12.6 12.7 12.8 Bihoreau N, Fontaine-Aupart MP, Lehegarat A, Desmadril M, Yon JM. First determination of the secondary structure of purified factor VIII light chain. Biochem J. 1992 Nov 15;288 ( Pt 1):35-40. PMID:1445279
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