Sandbox Reserved 1482
From Proteopedia
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| - | The <scene name='80/802656/Heavy_chain/4'>heavy chain</scene> has a various size (90 or 120 kDa) <ref name="wikipedia" /><ref name="Binhoreau">PMID: 1445279</ref | + | The <scene name='80/802656/Heavy_chain/4'>heavy chain</scene> has a various size (90 or 120 kDa) <ref name="wikipedia" /><ref name="Binhoreau">PMID: 1445279</ref>. It consists of the A<sub>1</sub>-A<sub>2</sub> domains <ref name="wikipedia" /><ref name="El" /><ref name="Binhoreau" />. Both A<sub>1</sub> and A<sub>2</sub> domains are built up of two connected β barrels <ref name="Ngo" />. |
| - | The <scene name='80/802656/Light_chain/2'>light chain</scene> has a molecular weight of 80 kDa and is composed of 684 amino acids <ref name="Binhoreau" / | + | The <scene name='80/802656/Light_chain/2'>light chain</scene> has a molecular weight of 80 kDa and is composed of 684 amino acids <ref name="Binhoreau" />. It contains two domains: a unique A domain of 371 amino acids and a duplicated C domain of 153 amino acids and 160 amino acids, respectively <ref name="Binhoreau" />. These domains are ranked in the following order A<sub>3</sub>-C<sub>1</sub>-C<sub>2</sub> <ref name="wikipedia" /><ref name="Binhoreau" />. It is composed of 42 % irregular structure, 36 % β-strands, and 22 % α-helices <ref name="Binhoreau" />. The C<sub>1</sub> and C<sub>2</sub> domains are defined by a distorted β barrel, while A<sub>3</sub>, as well as A<sub>1</sub> and A<sub>2</sub>, is composed of two connected β barrels <ref name="Ngo" />. This chain also contains of the major binding site of von Willebrand Factor at its N-terminus <ref name="Binhoreau" />. |
| - | Both chains are no covalently associated through to a calcium ion to form the active heterodimers <ref name="Ngo" /><ref name="Binhoreau" / | + | Both chains are no covalently associated through to a calcium ion to form the active heterodimers <ref name="Ngo" /><ref name="Binhoreau" />. This complex is the pro-coagulant factor VIIIa <ref name="wikipedia" />. |
| - | Such an association is essentialfor the functioning of the factor VIII <ref name="Binhoreau" / | + | Such an association is essentialfor the functioning of the factor VIII <ref name="Binhoreau" />. |
====Ligands==== | ====Ligands==== | ||
| - | Alpha-D-mannose, calcium ion (Ca<sup>2+</sup>), copper ion (Cu<sup>2+</sup>) and N-acetl-D-glucosamine are the four ligands the factor VIII is able to bind to <ref name="pdb" / | + | Alpha-D-mannose, calcium ion (Ca<sup>2+</sup>), copper ion (Cu<sup>2+</sup>) and N-acetl-D-glucosamine are the four ligands the factor VIII is able to bind to <ref name="pdb" />. |
| - | In factor VIII there are two copper ions and their binding sites are located internally within the <scene name='80/802656/A3cu/1'>A3</scene> and the <scene name='80/802656/A1/1'> A1 </scene> domain. In the latter, there is another ligand, a <scene name='80/802656/A1ca/1'>single calcium ion</scene>, bound to its binding site <ref name="Ngo" / | + | In factor VIII there are two copper ions and their binding sites are located internally within the <scene name='80/802656/A3cu/1'>A3</scene> and the <scene name='80/802656/A1/1'> A1 </scene> domain. In the latter, there is another ligand, a <scene name='80/802656/A1ca/1'>single calcium ion</scene>, bound to its binding site <ref name="Ngo" />. |
== Disease == | == Disease == | ||
| - | Hemophilia is a genetic disorder characterized by a permanent tendency to hemorrhage because of a lack of blood coagulation <ref name="Ngo" / | + | Hemophilia is a genetic disorder characterized by a permanent tendency to hemorrhage because of a lack of blood coagulation <ref name="Ngo" />. |
There are different types of hemophilia: A or B, caused by a deficiency of two different factors. | There are different types of hemophilia: A or B, caused by a deficiency of two different factors. | ||
Hemophilia A (HEMA), is four times as common as hemophilia B. | Hemophilia A (HEMA), is four times as common as hemophilia B. | ||
| - | It is caused by a deficiency of factor VIII. <ref name="Srivastava">Srivastava, A., Brewer, A. K., Mauser‐Bunschoten, E. P., Key, N. S., Kitchen, S., Llinas, A., ... & Street, A. (2013). Guidelines for the management of hemophilia. Haemophilia, 19(1), e1-e47.</ref | + | It is caused by a deficiency of factor VIII. <ref name="Srivastava">Srivastava, A., Brewer, A. K., Mauser‐Bunschoten, E. P., Key, N. S., Kitchen, S., Llinas, A., ... & Street, A. (2013). Guidelines for the management of hemophilia. Haemophilia, 19(1), e1-e47.</ref> |
| - | This deficiency in factor VIII clotting activity results in prolonged oozing after injuries, tooth extractions, or surgery, and delayed or recurrent bleeding prior to complete wound healing <ref name="Konkle">Barbara A Konkle, MD, Haley Huston, BS, and Shelley Nakaya Fletcher, BS. Hemophilia A, Synonym: Factor VIII Deficiency. Gene Rewiews. 2017 Jun 22. </ref | + | This deficiency in factor VIII clotting activity results in prolonged oozing after injuries, tooth extractions, or surgery, and delayed or recurrent bleeding prior to complete wound healing <ref name="Konkle">Barbara A Konkle, MD, Haley Huston, BS, and Shelley Nakaya Fletcher, BS. Hemophilia A, Synonym: Factor VIII Deficiency. Gene Rewiews. 2017 Jun 22. </ref>. |
| - | Although hemophilia A is usually an inherited disease and therefore runs in families <ref name="Srivastava" / | + | Although hemophilia A is usually an inherited disease and therefore runs in families <ref name="Srivastava" />, about one-third of people with the disease are caused by a spontaneous mutation <ref name="Srivastava" /> such as misense or nonsense mutations, gene deletions or inversions <ref name="Ngo" />. |
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Hemophilia A is inherited in an X-linked recessive manner: | Hemophilia A is inherited in an X-linked recessive manner: | ||
Females inherit two X chromosomes, one from their mother and one from their father (XX). Males inherit an X chromosome from their mother and a Y chromosome from their father (XY). This means that if a son inherits an X chromosome carrying hemophilia from his mother, he will have hemophilia. By contrast, daughters have two X chromosomes, even if they inherit the hemophilia gene from their mother, they inherit a healthy X chromosome from their father and as a result they are only carrier but not affected. | Females inherit two X chromosomes, one from their mother and one from their father (XX). Males inherit an X chromosome from their mother and a Y chromosome from their father (XY). This means that if a son inherits an X chromosome carrying hemophilia from his mother, he will have hemophilia. By contrast, daughters have two X chromosomes, even if they inherit the hemophilia gene from their mother, they inherit a healthy X chromosome from their father and as a result they are only carrier but not affected. | ||
| - | Thus, because of the recessivity only men are affected by this disease and women are carriers that may pass the gene on to their children (50% chance of transmitting it in each pregnancy). <ref name="Srivastava" / | + | Thus, because of the recessivity only men are affected by this disease and women are carriers that may pass the gene on to their children (50% chance of transmitting it in each pregnancy). <ref name="Srivastava" /> |
| - | The risk for boys to carry the disease therefore depends on the carrier status of the mother because affected males transmit the pathogenic variant to all of their daughters and none of their sons <ref name="Konkle" / | + | The risk for boys to carry the disease therefore depends on the carrier status of the mother because affected males transmit the pathogenic variant to all of their daughters and none of their sons <ref name="Konkle" />. |
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• Moderate hemophilia A: 1% ≤ factor VIII’s proportion in the blood ≤ 5% | • Moderate hemophilia A: 1% ≤ factor VIII’s proportion in the blood ≤ 5% | ||
| - | • Mild hemophilia A: 6% ≤ factor VIII’s proportion in the blood ≤ 40% <ref name="Konkle" /><ref>Rosendaal, F. R. (2001). Definitions in hemophilia, Recommendation of the scientific subcommittee on factor VIII and factor IX of the scientific and standardization committee of the International Society on Thrombosis and Haemostasis Factor VII and Factor IX Subcommittee.</ref | + | • Mild hemophilia A: 6% ≤ factor VIII’s proportion in the blood ≤ 40% <ref name="Konkle" /><ref>Rosendaal, F. R. (2001). Definitions in hemophilia, Recommendation of the scientific subcommittee on factor VIII and factor IX of the scientific and standardization committee of the International Society on Thrombosis and Haemostasis Factor VII and Factor IX Subcommittee.</ref> |
| - | The major treatment of the bleeding disorder associated with hemophilia A is the infusion of factor VIII, which leads to the correction of hemostasis <ref name="Srivastava" / | + | The major treatment of the bleeding disorder associated with hemophilia A is the infusion of factor VIII, which leads to the correction of hemostasis <ref name="Srivastava" />. |
== Relevance == | == Relevance == | ||
| - | Hemophilia occurs in approximately 1 in 5,000 live births but it is severe in approximately 60% of cases | + | Hemophilia occurs in approximately 1 in 5,000 live births but it is severe in approximately 60% of cases. |
| - | The main medication to treat hemophilia A is concentrated factor VIII protein, called “clotting factor”. Getting this “clotting factor” is therefore a major concern for hemophilia-affected people <ref name="Srivastava" / | + | The main medication to treat hemophilia A is concentrated factor VIII protein, called “clotting factor”. Getting this “clotting factor” is therefore a major concern for hemophilia-affected people <ref name="Srivastava" />. |
| - | Nowadays, recombinant coagulation factor VIII products, which are developed in a lab through the use of DNA technology <ref name="El" /> <ref name="toole" / | + | Nowadays, recombinant coagulation factor VIII products, which are developed in a lab through the use of DNA technology <ref name="El" /><ref name="toole" />. For instance, Toole and colleagues have created a biologically fully active factor with improved heterologous expression efficiency by deleting the B-domain from the native human factor VIII <ref name="toole" />. |
Revision as of 00:03, 12 January 2019
| This Sandbox is Reserved from 06/12/2018, through 30/06/2019 for use in the course "Structural Biology" taught by Bruno Kieffer at the University of Strasbourg, ESBS. This reservation includes Sandbox Reserved 1480 through Sandbox Reserved 1543. |
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Coagulation Factor VIII (3cdz)
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References
↑[1] UniProtKB – P00451 (FA8_HUMAN) (https://www.uniprot.org/uniprot/P00451)
↑[2] Protein Database: 3CDZ. 2008 (http://www.rcsb.org/structure/3CDZ)
↑[3] Bihoreau N1, Fontaine-Aupart MP, Lehegarat A, Desmadril M, Yon JM. First determination of the secondary structure of purified factor VIII light chain. Biochem J. 1992 Nov 15; 288 ( Pt 1):35-40. PMID: 1445279.
↑[4] S. E. Antonarakis. Molecular genetics of coagulation factor VIII gene and haemophilia A. Thromb Haemost. 1995 Jul; 74(1):322-8. PMID: 8578479
↑[5] Rosendaal, F. R. (2001). Definitions in hemophilia, Recommendation of the scientific subcommittee on factor VIII and factor IX of the scientific and standardization committee of the International Society on Thrombosis and Haemostasis Factor VII and Factor IX Subcommittee.
↑[6] Barbara A Konkle, MD, Haley Huston, BS, and Shelley Nakaya Fletcher, BS. Hemophilia A, Synonym: Factor VIII Deficiency. Gene Rewiews. 2017 Jun 22.
↑[7] Srivastava, A., Brewer, A. K., Mauser‐Bunschoten, E. P., Key, N. S., Kitchen, S., Llinas, A., ... & Street, A. (2013). Guidelines for the management of hemophilia. Haemophilia, 19(1), e1-e47.
↑[8] Wikipedia, Factor VIII (https://en.wikipedia.org/wiki/Factor_VIII)
↑[9] Ngo JC, Huang M, Roth DA, Furie BC, Furie B. Crystal structure of human factor VIII: implications for the formation of the factor IXa-factor VIIIa complex. Structure. 2008 Apr; 16(4):597-606. doi: 10.1016/j.str.2008.03.001. PMID: 18400180
↑[10] Patek, A. J., & Taylor, F. H. L. (1937). Hemophilia. II. Some properties of a substance obtained from normal human plasma effective in accelerating the coagulation of hemophilic blood. The Journal of clinical investigation, 16(1), 113-124.
↑ [11] Toole, J. J., Pittman, D. D., Orr, E. C., Murtha, P., Wasley, L. C., & Kaufman, R. J. (1986). A large region (approximately equal to 95 kDa) of human factor VIII is dispensable for in vitro procoagulant activity. Proceedings of the National Academy of Sciences, 83(16), 5939-5942.
↑ [12] Ragni, M. V. (2018). Mimicking Factor VIII to Manage the Factor VIII–Deficient State. The New England journal of medicine, 379(9), 880-882.
↑ [13] Dallman, P. R., & Pool, J. G. (1968). Treatment of hemophilia with factor VIII concentrates. New England Journal of Medicine, 278(4), 199-202.
↑ [14] El Khorassani, M., & Benkirane Agoumi, N. (1996). Le facteur VIII coagulant. Médecine du Maghreb, 55, 11-13.
↑ [15] Ljung, R. C. (2018). Prevention and management of bleeding episodes in children with hemophilia. Pediatric Drugs, 1-10.
- ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 Wikipedia, Factor VIII (https://en.wikipedia.org/wiki/Factor_VIII)
- ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 2.18 Ngo JC, Huang M, Roth DA, Furie BC, Furie B. Crystal structure of human factor VIII: implications for the formation of the factor IXa-factor VIIIa complex. Structure. 2008 Apr;16(4):597-606. PMID:18400180 doi:10.1016/j.str.2008.03.001
- ↑ 3.0 3.1 Antonarakis SE. Molecular genetics of coagulation factor VIII gene and hemophilia A. Thromb Haemost. 1995 Jul;74(1):322-8. PMID:8578479
- ↑ Ragni, M. V. (2018). Mimicking Factor VIII to Manage the Factor VIII–Deficient State. The New England journal of medicine, 379(9), 880-882.
- ↑ Patek, A. J., & Taylor, F. H. L. (1937). Hemophilia. II. Some properties of a substance obtained from normal human plasma effective in accelerating the coagulation of hemophilic blood. The Journal of clinical investigation, 16(1), 113-124.
- ↑ Dallman, P. R., & Pool, J. G. (1968). Treatment of hemophilia with factor VIII concentrates. New England Journal of Medicine, 278(4), 199-202.
- ↑ 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.8 El Khorassani, M., & Benkirane Agoumi, N. (1996). Le facteur VIII coagulant. Médecine du Maghreb, 55, 11-13.
- ↑ Ljung, R. C. (2018). Prevention and management of bleeding episodes in children with hemophilia. Pediatric Drugs, 1-10.
- ↑ 9.0 9.1 UniProtKB – P00451 (FA8_HUMAN) (https://www.uniprot.org/uniprot/P00451)
- ↑ 10.0 10.1 10.2 Protein Database: 3CDZ. 2008 (http://www.rcsb.org/structure/3CDZ)
- ↑ 11.0 11.1 11.2 Toole, J. J., Pittman, D. D., Orr, E. C., Murtha, P., Wasley, L. C., & Kaufman, R. J. (1986). A large region (approximately equal to 95 kDa) of human factor VIII is dispensable for in vitro procoagulant activity. Proceedings of the National Academy of Sciences, 83(16), 5939-5942.
- ↑ 12.0 12.1 12.2 12.3 12.4 12.5 12.6 12.7 12.8 Bihoreau N, Fontaine-Aupart MP, Lehegarat A, Desmadril M, Yon JM. First determination of the secondary structure of purified factor VIII light chain. Biochem J. 1992 Nov 15;288 ( Pt 1):35-40. PMID:1445279
- ↑ 13.0 13.1 13.2 13.3 13.4 13.5 Srivastava, A., Brewer, A. K., Mauser‐Bunschoten, E. P., Key, N. S., Kitchen, S., Llinas, A., ... & Street, A. (2013). Guidelines for the management of hemophilia. Haemophilia, 19(1), e1-e47.
- ↑ 14.0 14.1 14.2 Barbara A Konkle, MD, Haley Huston, BS, and Shelley Nakaya Fletcher, BS. Hemophilia A, Synonym: Factor VIII Deficiency. Gene Rewiews. 2017 Jun 22.
- ↑ Rosendaal, F. R. (2001). Definitions in hemophilia, Recommendation of the scientific subcommittee on factor VIII and factor IX of the scientific and standardization committee of the International Society on Thrombosis and Haemostasis Factor VII and Factor IX Subcommittee.
