Gp120
From Proteopedia
(Difference between revisions)
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</StructureSection> | </StructureSection> | ||
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- | ==3D structures of Gp120== | ||
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- | Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} | ||
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- | *Gp120 from HIV-1; Domains – Clade A/E 1-140; outer – 1-181; RHPA 1-216; V1-V2 118-246; V3 296-331; core 44-492; C5 484-506 | ||
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- | **[[3dnl]], [[3dnn]], [[3dno]], [[3tgq]], [[3tgr]], [[3tgt]], [[3tih]], [[5f4u]] - Gp120 core<br /> | ||
- | **[[5fa2]] - Gp120 core (mutant)<br /> | ||
- | **[[1meq]] – GP120 C5 domain – NMR<br /> | ||
- | **[[1niz]], [[1nj0]], [[2esx]], [[2esz]], [[1u6u]], [[1u6v]] - GP120 V3 loop – NMR<br /> | ||
- | **[[4jpj]], [[5idl]] - Gp120 outer domain<br /> | ||
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- | *Gp120 binary complex | ||
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- | **[[4jb9]], [[4lsp]], [[4lsq]], [[4lsr]], [[4lsu]], [[5te6]], [[5fcu]], [[5f9w]], [[5f9o]], [[5f96]], [[5cd5]], [[4xvt]] - Gp120 Clade A/E + antibody <br /> | ||
- | **[[4yc2]], [[4ybl]], [[4s1s]], [[4s1r]], [[4s1q]] - Gp120 Clade A/E (mutant) + antibody <br /> | ||
- | **[[4i3r]], [[4i3s]], [[5kzc]], [[5if0]], [[5ies]], [[4jpv]] - Gp120 outer domain + antibody<br /> | ||
- | **[[5t33]] - Gp120 RHPA + antibody <br /> | ||
- | **[[3u2s]] - Gp120 V1V2 region + antibody PG9<br /> | ||
- | **[[3se8]], [[3se9]], [[3hi1]], [[3rjq]], [[4jkp]], [[4jm2]], [[4lss]], [[4lsv]], [[4ywg]], [[4xvs]], [[3ngb]], [[4ye4]], [[4rwy]], [[4jan]], [[4lst]], [[5te7]], [[5f6j]], [[5te4]], [[6bf4]], [[5wb9]], [[5w6d]], [[5ukr]], [[5uem]], [[5igx]], [[4dvr]] - Gp120 + antibody<br /> | ||
- | **[[3idx]], [[3idy]], [[2ny7]]. [[4jdt]], [[5fyl]], [[5fec]], [[6bck]] - Gp120 core (mutant) + antibody <br /> | ||
- | **[[4rz8]], [[5f4l]], [[5f4p]], [[5f4r]] - Gp120 core + CD4 mimic <br /> | ||
- | **[[4dku]], [[4dkv]] - Gp120 core (mutant) + CD4 mimetic<br /> | ||
- | **[[4jzw]], [[4jzz]], [[4k0a]], [[4ka2]] - Gp120 core + CD4 mimetic miniprotein<br /> | ||
- | **[[4jpj]], [[4rx4]] - Gp120 Clade A + antibody <br /> | ||
- | **[[3tgs]], [[4dko]], [[4dkp]], [[4dkq]], [[4dkr]] - Gp120 core + piperidine derivative<br /> | ||
- | **[[5u6e]] - Gp120 core + pyrrole derivative<br /> | ||
- | **[[4dvx]], [[4dvw]], [[4dvv]], [[4dvt]], [[4dvs]] - Gp120 core (mutant) + piperazine derivative<br /> | ||
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- | *Gp120 ternary complex | ||
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- | **[[5kjr]] - Gp120 Clade A/E + M48U1 peptide + antibody<br /> | ||
- | **[[4rfo]], [[4rfn]] - Gp120 Clade A/E (mutant) + M48U1 peptide + antibody<br /> | ||
- | **[[4h8w]] - Gp120 Clade A/E + CD4 + antibody<br /> | ||
- | **[[3jwd]], [[3jwo]], [[2i5y]], [[2i60]] - Gp120 core + hCD4 N terminal + antibody <br /> | ||
- | **[[2nxy]], [[2nxz]], [[2ny0]], [[2ny1]], [[2ny2]], [[2ny3]], [[2ny4]], [[2ny5]], [[2ny6]], [[1gc1]], [[1g9m]], [[1g9n]], [[1rzj]], [[1rzk]], [[1yyl]], [[1yym]], [[2b4c]] - Gp120 core (mutant) + hCD4 N terminal + antibody <br /> | ||
- | **[[5a8h]], [[5a7x]], [[4rqs]], [[4r4h]], [[4r2g]], [[4p9h]] - Gp120 core + hCD4 D1-D2 domain + antibody<br /> | ||
- | **[[4laj]] - Gp120 core + CD4 mimetic miniprotein + antibody<br /> | ||
- | **[[5w4l]], [[5uwe]] - Gp120 core (mutant) + CD4 mimetic peptide + antibody<br /> | ||
- | **[[4r4f]], [[4r4n]] - Gp120 core + M48U1 peptide + antibody<br /> | ||
- | **[[5v8l]], [[5v8m]], [[5uty]], [[5utf]], [[5um8]], [[5jsa]], [[5js9]], [[5i8h]], [[5d9q]], [[5cjx]], [[5c7k]], [[6ccb]], [[6mft]], [[6mdt]], [[6mco]], [[6d2p]], [[6ck9]], [[6ch9]], [[6ch8]], [[6ch7]] - Gp120 core + Gp41 + antibody<br /> | ||
- | **[[5fyk]], [[5fyj]], [[4nco]], [[6nnj]], [[6nnf]], [[6nm6]] - Gp120 core (mutant) + Gp41 + antibody<br /> | ||
- | **[[6cde]], [[6cdi]], [[6orn]], [[6oro]], [[6orp]], [[6orq]], [[6okp]], [[6nqd]], [[6nc3]], [[6nc2]], [[6mn7]], [[6e5p]], [[6cuf]], [[6cue]], [[6chb]], [[5u1f]], [[5thr]], [[4cc8]], [[3j70]] - Gp120 core + Gp41 + antibody – Cryo EM<br /> | ||
- | **[[3j5m]] - Gp120 core (mutant) + Gp41 + antibody – Cryo EM<br /> | ||
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- | *Gp120 from HIV-2 binary complex | ||
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- | **[[5fec]], [[5cay]] - Gp120 core (mutant) + CD4<br /> | ||
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- | *Gp120 from SIV | ||
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- | **[[2bf1]], [[3fus]] - Gp120 core<br /> | ||
- | **[[3jcc]], [[3jcb]] - Gp120 core + CD4 + antibody – Cryo EM<br /> | ||
- | }} | ||
== References == | == References == |
Revision as of 07:43, 17 July 2019
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References
- ↑ Poignard P, Saphire EO, Parren PW, Burton DR. gp120: Biologic aspects of structural features. Annu Rev Immunol. 2001;19:253-74. PMID:11244037 doi:http://dx.doi.org/10.1146/annurev.immunol.19.1.253
- ↑ Kassler K, Sticht H. Molecular mechanism of HIV-1 gp120 mutations that reduce CD4 binding affinity. J Biomol Struct Dyn. 2013 Jan 9. PMID:23297802 doi:10.1080/07391102.2012.746946