User:Karsten Theis/Animation course
From Proteopedia
(Difference between revisions)
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<scene name='52/520489/Ligand_pocket/2'>mu opioid receptor</scene> | <scene name='52/520489/Ligand_pocket/2'>mu opioid receptor</scene> | ||
| + | Choose a background | ||
<jmol><jmolLink><script>background black</script><text>background</text></jmolLink> </jmol> | <jmol><jmolLink><script>background black</script><text>background</text></jmolLink> </jmol> | ||
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<jmol><jmolLink><script>console; show moveto</script><text>orientation</text></jmolLink> </jmol> | <jmol><jmolLink><script>console; show moveto</script><text>orientation</text></jmolLink> </jmol> | ||
| - | + | How do you want the opioid to look like? | |
| - | <jmol><jmolLink><script>select BF0;spacefill only;</script><text>spacefill</text></jmolLink> </jmol> | + | <jmol><jmolLink><script>select BF0;center selected; spacefill only;spacefill 0.4;wireframe 0.15</script><text>ball and stick</text></jmolLink> </jmol> |
| + | |||
| + | <jmol><jmolLink><script>select BF0;center selected; spacefill only;</script><text>spacefill</text></jmolLink> </jmol> | ||
<jmol> | <jmol> | ||
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</jmol> | </jmol> | ||
| - | + | Decide how and whether to show the protein | |
| + | <jmol><jmolLink><script>select protein; cartoon only; color group</script><text>rainbow cartoon</text></jmolLink> </jmol> | ||
| - | <jmol><jmolLink><script>select protein; color magenta</script><text>magenta</text></jmolLink> </jmol> | ||
| + | <jmol><jmolLink><script>select protein; cartoon only; color magenta</script><text>magenta cartoon</text></jmolLink> </jmol> | ||
| + | |||
| + | |||
| + | <jmol><jmolLink><script>select protein; cartoon only; color structure</script><text>helix-emphasize cartoon</text></jmolLink> </jmol> | ||
| + | |||
| + | <jmol><jmolLink><script>select protein; cartoon off; </script><text>no protein</text></jmolLink> </jmol> | ||
| - | <jmol><jmolLink><script>select protein; color structure</script><text>helix</text></jmolLink> </jmol> | ||
===Save some orientations=== | ===Save some orientations=== | ||
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| - | |||
| - | x = script("show moveto")[11][0] | ||
| - | speed = "moveto 4.0" | ||
| - | script inline @{speed + x} | ||
===Transition between orientations=== | ===Transition between orientations=== | ||
| - | Select a transition speed: <jmol><jmolLink><script>speed = "moveto 1.0"</script><text>1 sec</text></jmolLink> <jmol><jmolLink><script>speed = "moveto 2.0"</script><text>2 sec</text></jmolLink> <jmol><jmolLink><script>speed = "moveto 4.0"</script><text>4 sec</text></jmolLink> <jmol><jmolLink><script>speed = "moveto 10.0"</script><text>10 sec</text></jmolLink> </jmol> | + | Select a transition speed: <jmol><jmolLink><script>speed = "moveto 1.0"</script><text>1 sec</text></jmolLink></jmol> <jmol><jmolLink><script>speed = "moveto 2.0"</script><text>2 sec</text></jmolLink></jmol> <jmol><jmolLink><script>speed = "moveto 4.0"</script><text>4 sec</text></jmolLink></jmol> <jmol><jmolLink><script>speed = "moveto 10.0"</script><text>10 sec</text></jmolLink> </jmol> |
Go to different views: | Go to different views: | ||
| - | <jmol><jmolLink><script>script inline @{speed + x1}</script><text>V1</text></jmolLink> <jmol><jmolLink><script>script inline @{speed + x2}</script><text>V2</text></jmolLink> <jmol><jmolLink><script>script inline @{speed + x3}</script><text>V3</text></jmolLink> <jmol><jmolLink><script>script inline @{speed + x4}</script><text>V4</text></jmolLink> | + | <jmol><jmolLink><script>script inline @{speed + x1}</script><text>V1</text></jmolLink></jmol> <jmol><jmolLink><script>script inline @{speed + x2}</script><text>V2</text></jmolLink></jmol> <jmol><jmolLink><script>script inline @{speed + x3}</script><text>V3</text></jmolLink></jmol> <jmol><jmolLink><script>script inline @{speed + x4}</script><text>V4</text></jmolLink></jmol> |
Revision as of 22:31, 12 September 2019
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