User:Karsten Theis/Animation course
From Proteopedia
(Difference between revisions)
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<jmol><jmolLink><script>script "http://proteopedia.org/scripts/52/520489/Ligand_pocket/2.spt"; connect (BF0) (not BF0) DELETE; select BF0; set picking dragselected; set allowrotateselected; temp0 = {BF0}.xyz.all</script><text>click to prepare</text></jmolLink></jmol> | <jmol><jmolLink><script>script "http://proteopedia.org/scripts/52/520489/Ligand_pocket/2.spt"; connect (BF0) (not BF0) DELETE; select BF0; set picking dragselected; set allowrotateselected; temp0 = {BF0}.xyz.all</script><text>click to prepare</text></jmolLink></jmol> | ||
| - | + | Click and drag on the ligand and move it. Click and drag away from the ligand to adjust the view. To | |
| + | store the ligand position, click on the links below: | ||
<jmol><jmolLink><script>temp1 = {BF0}.xyz.all</script><text>scene1</text></jmolLink></jmol> | <jmol><jmolLink><script>temp1 = {BF0}.xyz.all</script><text>scene1</text></jmolLink></jmol> | ||
<jmol><jmolLink><script>temp2 = {BF0}.xyz.all</script><text>scene2</text></jmolLink></jmol> | <jmol><jmolLink><script>temp2 = {BF0}.xyz.all</script><text>scene2</text></jmolLink></jmol> | ||
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<jmol><jmolLink><script>temp4 = {BF0}.xyz.all</script><text>scene4</text></jmolLink></jmol> | <jmol><jmolLink><script>temp4 = {BF0}.xyz.all</script><text>scene4</text></jmolLink></jmol> | ||
| - | Recall ligand position: | + | Recall ligand position: Clicking on the links below will restore the ligand position (scene0 is the original position in the binding pocket): |
<jmol><jmolLink><script>ROTATE COMPARE {BF0} @{temp0} 30</script><text>scene0</text></jmolLink></jmol> | <jmol><jmolLink><script>ROTATE COMPARE {BF0} @{temp0} 30</script><text>scene0</text></jmolLink></jmol> | ||
<jmol><jmolLink><script>ROTATE COMPARE {BF0} @{temp1} 30</script><text>scene1</text></jmolLink></jmol> | <jmol><jmolLink><script>ROTATE COMPARE {BF0} @{temp1} 30</script><text>scene1</text></jmolLink></jmol> | ||
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<jmol><jmolLink><script>ROTATE COMPARE {BF0} @{temp4} 30</script><text>scene4</text></jmolLink></jmol> | <jmol><jmolLink><script>ROTATE COMPARE {BF0} @{temp4} 30</script><text>scene4</text></jmolLink></jmol> | ||
| + | To animate, click below | ||
| + | <jmol><jmolLink><script>set picking none</script><text>turn of ligand dragging</text></jmolLink></jmol> | ||
<jmol><jmolLink><script>ROTATE COMPARE {BF0} @{temp3} 30; ROTATE COMPARE {BF0} @{temp2} 30; ROTATE COMPARE {BF0} @{temp1} 30; ROTATE COMPARE {BF0} @{temp0} 30;</script><text>bind</text></jmolLink></jmol> | <jmol><jmolLink><script>ROTATE COMPARE {BF0} @{temp3} 30; ROTATE COMPARE {BF0} @{temp2} 30; ROTATE COMPARE {BF0} @{temp1} 30; ROTATE COMPARE {BF0} @{temp0} 30;</script><text>bind</text></jmolLink></jmol> | ||
Revision as of 04:21, 13 September 2019
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