Animate a scene with Jmol
Load the scene and choose a look
Open and give it a certain look.
1. Choose a background:
2. How, if it all, do you want to show the protein?
3. How do you want the opioid to look like?
4. Other choices:
Save some orientations
Using your skills from the viewing guide, explore the scene (zoom, rotate, drag, label, measure etc).
Every time you find an orientation (rotation, translation, zoom), click a different one of these links. You can restore the orientation by clicking on the link in the next section.
Transition between orientations
Select a transition speed:
Go to different views:
Animate between the four views:
Show the underlying commands
Dock a ligand
Click and drag on the ligand to move it. Alt-click and drag on the ligand to rotate it. Click and drag away from the ligand to adjust the view. To store each consecutive ligand position, consecutively click on the links below:
Recall ligand position
Clicking on the links below will restore the ligand position (scene0 is the original position in the binding pocket):
To animate, click below
Collection of molecules
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