Gag polyprotein 3D structures

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{{#tree:id=OrganizedByTopic|openlevels=0|
{{#tree:id=OrganizedByTopic|openlevels=0|
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*Gag polyprotein from HIV-1
+
*Gag polyprotein from HIV-1; matrix protein 1-132; capsid protein 133-362
-
**[[2h3i]] – Gag residues 2-132 – HIV-1<BR />
+
**[[2h3i]] – Gag matrix protein – HIV-1<br />
-
**[[2h3f]], [[2h3i]], [[1uph]] - Gag residues 2-132 – NMR<BR />
+
**[[2h3f]], [[2h3i]], [[1uph]] - Gag matrix protein – NMR<br />
-
**[[5mdg]], [[5mdf]], [[5mde]], [[5mdd]], [[5mdc]], [[5mdb]], [[5mda]], [[5md9]], [[5md8]], [[5md7]], [[5md6]], [[5md5]], [[5md4]], [[5md3]], [[5md2]], [[5md1]], [[5md0]], [[5mcz]] - Gag residues 1-221 – Cryo EM<br />
+
**[[7jxr]], [[7jxs]] - Gag matrix protein (mutant)<br />
-
**[[1l6n]] - Gag residues 1-283 – NMR<BR />
+
**[[2jmg]], [[2nv3]] - Gag matrix protein (mutant) – NMR<br />
-
**[[1gwp]] - Gag residues 132-283 – NMR<BR />
+
**[[2xde]] - Gag matrix protein + inhibitor<br />
-
**[[2jmg]], [[2nv3]] - Gag residues 2-132 (mutant) – NMR<BR />
+
**[[2h3q]], [[2h3v]], [[2h3z]] - Gag matrix protein + phosphatidyl inositol bisphosphate - NMR<br />
-
**[[1u57]] - Gag residues 1-48 – NMR<BR />
+
**[[1gwp]] - Gag core domain N-terminal 132-283 – NMR<br />
-
**[[1esk]] - Gag residues 12-53 – NMR<BR />
+
**[[4j91]], [[4j92]], [[4j93]] - Gag core domain N-terminal + inhibitor <br />
-
**[[1baj]] – Gag C terminal<BR />
+
**[[2x2d]] - Gag core domain N-terminal + peptidyl-prolyl cis-trans isomerase A <br />
-
**[[2znf]] – Gag zinc fingerlike domain 389-406 - NMR<BR />
+
**[[1baj]] – Gag capsid protein 146-229<br />
-
**[[5teo]] - Gag residues 278-377 <br />
+
**[[5teo]] - Gag capsid protein C-terminal <br />
-
**[[6n3j]] - Gag residues 278-377 (mutant) <br />
+
**[[6n3j]] - Gag capsid protein C-terminal (mutant) <br />
-
**[[2h3q]], [[2h3v]], [[2h3z]] - Gag residues 2-132 + phosphatidyl inositol bisphosphate - NMR<BR />
+
**[[6n3u]] - Gag capsid protein C-terminal (mutant) + inhibitor<br />
-
**[[1fgl]] – Gag residues 81-105 + cyclophilin A<BR />
+
**[[2lf4]], [[6axr]], [[6axs]], [[6axt]], [[6axv]], [[6axw]], [[6axx]], [[6axy]], [[6omt]] - Gag capsid protein (mutant) <br />
-
**[[2xde]] - Gag residues 1-146 + inhibitor<BR />
+
**[[4u0d]], [[6ay9]], [[6aya]] - Gag capsid protein + peptide<br />
-
**[[4j91]], [[4j92]], [[4j93]] - Gag residues 133-278 + inhibitor<br />
+
**[[6b2g]], [[6b2h]], [[6b2i]], [[6b2j]], [[6b2k]], [[6mqa]], [[6mqo]], [[6mqp]], [[6obh]], [[6r6q]], [[6r8c]] - Gag capsid protein <br />
-
**[[6n3u]] - Gag residues 278-377 (mutant) + inhibitor<br />
+
**[[6x63]] - Gag capsid protein - NMR<br />
-
**[[2x2d]] - Gag residues 133-278 + peptidyl-prolyl cis-trans isomerase A<BR />
+
**[[5upw]], [[5mcy]], [[5mcx]], [[6skm]], [[6skn]], [[6slq]], [[6slu]], [[6smu]], [[6vws]], [[6wap]] - Gag capsid protein – Cryo EM<br />
-
**[[2lf4]] - Gag residues 133-363 (mutant)<br />
+
**[[6ern]] - Gag capsid protein + ATP<br />
-
**[[4u0d]] - Gag residues 133-363 + Nup153 peptide<br />
+
**[[6erm]] - Gag capsid protein + TTP derivative<br />
-
**[[5upw]], [[5mcy]], [[5mcx]] - Gag residues 139-351 – Cryo EM<br />
+
**[[6h09]], [[6es8]] - Gag capsid protein + inositol hexakisphosphate<br />
-
**[[6ern]] - Gag residues 139-351 + ATP<br />
+
-
**[[6erm]] - Gag residues 139-351 + TTP derivative<br />
+
-
**[[6h09]], [[6es8]] - Gag residues 133-315 + inositol hexakisphosphate<br />
+
**[[2xt1]] – Gag C terminal + camelid VHH<br />
**[[2xt1]] – Gag C terminal + camelid VHH<br />
 +
**[[6bhr]], [[6bhs]], [[6bht]] - Gag capsid p24 (mutant) + inositol hexakisphosphate<br />
 +
**[[6v2f]] - Gag capsid p24 + pyridine derivative<br />
 +
**[[6vkv]] - Gag capsid p24 (mutant) + pyridine derivative<br />
 +
**[[5mdg]], [[5mdf]], [[5mde]], [[5mdd]], [[5mdc]], [[5mdb]], [[5mda]], [[5md9]], [[5md8]], [[5md7]], [[5md6]], [[5md5]], [[5md4]], [[5md3]], [[5md2]], [[5md1]], [[5md0]], [[5mcz]], [[6ec2]] - Gag capsid p24 – Cryo EM<br />
 +
**[[1l6n]] - Gag N-terminal 1-283 – NMR<br />
 +
**[[6rwg]] - Gag residues 271-427 (mutant) – NMR<br />
 +
**[[1u57]] - Gag residues 345-392 – NMR<br />
 +
**[[1esk]] - Gag NCPT 12-53 – NMR<br />
 +
**[[2znf]] – Gag zinc fingerlike domain 389-406 – NMR<br />
 +
**[[1fgl]] – Gag residues 81-105 + cyclophilin A<br />
*Gag polyprotein from HIV-2
*Gag polyprotein from HIV-2
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**[[1a6s]] – Gag M domain (mutant) 2-87 - NMR<BR />
**[[1a6s]] – Gag M domain (mutant) 2-87 - NMR<BR />
**[[5a9e]] - Gag residues 84-577 – Cryo EM<br />
**[[5a9e]] - Gag residues 84-577 – Cryo EM<br />
 +
**[[6ccj]] - Gag matrix protein – NMR<br />
 +
**[[6ce5]], [[6cus]], [[6cv8]], [[6cw4]] - Gag matrix protein + phosphate derivative – NMR<br />
 +
**[[7no0]], [[7no1]], [[7no2]], [[7no3]], [[7no4]], [[7no5]], [[7no6]], [[7no7]], [[7no9]], [[7noa]], [[7nob]], [[7noc]], [[7nod]], [[7noe]], [[7nof]], [[7nog]], [[7noh]], [[7noi]], [[7noj]], [[7nok]], [[7nol]], [[7nom]], [[7non]], [[7noo]], [[7nop]], [[7noq]] - Gag capsid protein p27 – Cryo EM<br />
*Gag polyprotein from Simian immunodeficiency virus
*Gag polyprotein from Simian immunodeficiency virus
**[[1ecw]], [[1ed1]] - Gag<BR />
**[[1ecw]], [[1ed1]] - Gag<BR />
 +
 +
*Gag polyprotein from feline immunodeficiency virus
 +
 +
**[[6wa3]], [[6wa4]], [[6wa5]] – Gag matrix protein – NMR<br />
*Gag polyprotein from Moloney murine leukemia virus
*Gag polyprotein from Moloney murine leukemia virus
**[[1u7k]], [[3bp9]] - Gag residues 215-345<BR />
**[[1u7k]], [[3bp9]] - Gag residues 215-345<BR />
 +
**[[6gza]] - Gag residues 346-432<br />
**[[1u6p]] – Gag residues 479-534 + DNA <br />
**[[1u6p]] – Gag residues 479-534 + DNA <br />
**[[6mig]] - Gag residues 683-937 + DNA<br />
**[[6mig]] - Gag residues 683-937 + DNA<br />
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*Gag polyprotein from equine infectious anemia virus
*Gag polyprotein from equine infectious anemia virus
-
**[[1hek]] – Gag
+
**[[1hek]] – Gag<br />
 +
**[[6t61]], [[6t63]], [[6t64]] – Gag – Cryo EM<br />
*Gag polyprotein from Mason-Pfizer monkey virus
*Gag polyprotein from Mason-Pfizer monkey virus
**[[1cl4]] - Gag residues 49-80 (mutant) – NMR<BR />
**[[1cl4]] - Gag residues 49-80 (mutant) – NMR<BR />
 +
**[[6hwi]] – Gag 317-516 – Cryo EM<br />
*Gag polyprotein from human spumaretrovirus
*Gag polyprotein from human spumaretrovirus
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**[[4jmr]] - Gag N terminal + Env protein<br />
**[[4jmr]] - Gag N terminal + Env protein<br />
**[[5m1h]], [[5m1g]] - Gag residues 300-477 - NMR<br />
**[[5m1h]], [[5m1g]] - Gag residues 300-477 - NMR<br />
-
}}
+
 
 +
*Gag polyprotein from human endogenous retrovirus
 +
 
 +
**[[6ssj]], [[6ssk]], [[6ssm]] - Gag capsid protein – Cryo EM<br />
 +
**[[6sai]] - Gag C-terminal 198-288 – NMR<br />
[[Category:Topic Page]]
[[Category:Topic Page]]

Revision as of 07:42, 2 August 2021

3D structures of Gag polyprotein

Updated on 02-August-2021 {{#tree:id=OrganizedByTopic|openlevels=0|

  • Gag polyprotein from HIV-1; matrix protein 1-132; capsid protein 133-362
  • Gag polyprotein from HIV-2
    • 2wlv - Gag residues 99-242 – HIV-2
    • 2ec7 – Gag – NMR
  • Gag polyprotein from Rous sarcoma virus
  • Gag polyprotein from Simian immunodeficiency virus
  • Gag polyprotein from feline immunodeficiency virus
  • Gag polyprotein from Moloney murine leukemia virus
    • 1u7k, 3bp9 - Gag residues 215-345
    • 6gza - Gag residues 346-432
    • 1u6p – Gag residues 479-534 + DNA
    • 6mig - Gag residues 683-937 + DNA
  • Gag polyprotein from equine infectious anemia virus
  • Gag polyprotein from Mason-Pfizer monkey virus
    • 1cl4 - Gag residues 49-80 (mutant) – NMR
    • 6hwi – Gag 317-516 – Cryo EM
  • Gag polyprotein from human spumaretrovirus
    • 4jnh - Gag N terminal 1-179
    • 4jmr - Gag N terminal + Env protein
    • 5m1h, 5m1g - Gag residues 300-477 - NMR
  • Gag polyprotein from human endogenous retrovirus
    • 6ssj, 6ssk, 6ssm - Gag capsid protein – Cryo EM
    • 6sai - Gag C-terminal 198-288 – NMR

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

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