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Sandbox Reserved 1694
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These <scene name='89/892737/Amino_acids_rotating/3'>amino acids</scene> play an extensive role in interactions between 1-PO4 and 2-PO4 of the substrate to the active site. Also, there are a few different <scene name='89/892737/Amino_acids_for_ring/1'>amino acids</scene> that interact with the inositol ring and help reinforce the binding of the Ins(1,4)P2. | These <scene name='89/892737/Amino_acids_rotating/3'>amino acids</scene> play an extensive role in interactions between 1-PO4 and 2-PO4 of the substrate to the active site. Also, there are a few different <scene name='89/892737/Amino_acids_for_ring/1'>amino acids</scene> that interact with the inositol ring and help reinforce the binding of the Ins(1,4)P2. | ||
<ref name="dollins">PMID:33172890</ref> | <ref name="dollins">PMID:33172890</ref> | ||
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| + | Inositol (1,4)-bisphosphate is a <scene name='89/892737/Substrate/2'>substrate</scene> that binds in the active site of INPP1D54A. The phosphate (1-PO4) in the substrate serves as a ligand for both the calcium ions. <ref name="dollins" /> | ||
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== Structural highlights == | == Structural highlights == | ||
INPP1D54A contains 13 secondary structural elements of which 10 are alpha helices and 3 are beta-sheets (<scene name='89/892737/Secondary_structures/5'>secondary strucutres</scene>). Percentage-wise, this enzyme is 77% alpha-helices, 23% beta-sheets. Alpha helix 8 and beta-sheet 2 each contain one catalytic amino acid. Also, helix 6 and 7 and beta-sheet 2 form important interactions with the substrate (have 6 of the 9 amino acids that interact with the substrate). | INPP1D54A contains 13 secondary structural elements of which 10 are alpha helices and 3 are beta-sheets (<scene name='89/892737/Secondary_structures/5'>secondary strucutres</scene>). Percentage-wise, this enzyme is 77% alpha-helices, 23% beta-sheets. Alpha helix 8 and beta-sheet 2 each contain one catalytic amino acid. Also, helix 6 and 7 and beta-sheet 2 form important interactions with the substrate (have 6 of the 9 amino acids that interact with the substrate). | ||
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== Other important features == | == Other important features == | ||
In the structure INPP1D54A, there is a mutation in the amino acid aspartic acid (D)54 and causes it to change to alanine (A)54 (<scene name='89/892737/Alanine/1'>mutation in D54</scene>). This mutation does not impact the substrate affinity but does decrease the activity of INPP1. <ref name="dollins" /> | In the structure INPP1D54A, there is a mutation in the amino acid aspartic acid (D)54 and causes it to change to alanine (A)54 (<scene name='89/892737/Alanine/1'>mutation in D54</scene>). This mutation does not impact the substrate affinity but does decrease the activity of INPP1. <ref name="dollins" /> | ||
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Revision as of 22:58, 6 December 2021
| This Sandbox is Reserved from 10/01/2021 through 01/01//2022 for use in Biochemistry taught by Bonnie Hall at Grand View University, Des Moines, USA. This reservation includes Sandbox Reserved 1690 through Sandbox Reserved 1699. |
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Inositol polyphosphate 1-Phosphatase (INPP1) D54A
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References
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
- ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
- ↑ 3.0 3.1 3.2 Dollins DE, Xiong JP, Endo-Streeter S, Anderson DE, Bansal VS, Ponder JW, Ren Y, York JD. A Structural Basis for Lithium and Substrate Binding of an Inositide Phosphatase. J Biol Chem. 2020 Nov 10. pii: RA120.014057. doi: 10.1074/jbc.RA120.014057. PMID:33172890 doi:http://dx.doi.org/10.1074/jbc.RA120.014057
