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Cortistatin-14(structure with cortistatin) is one of the peptide ligands that binds to MRGPRX2. Cortistatin-14 interacts with the binding pocket through an electrostatic (ZIZ) interaction in sub-pocket 1 between Lys-3 on the peptide and Glu-164 and Asp-184 on MRGPRX2. Additionally, there are hydrophobic interactions in sub-pocket 2 between the peptide and the binding pocket due to the large hydrophobic amino acids on Cortistatin-14. | Cortistatin-14(structure with cortistatin) is one of the peptide ligands that binds to MRGPRX2. Cortistatin-14 interacts with the binding pocket through an electrostatic (ZIZ) interaction in sub-pocket 1 between Lys-3 on the peptide and Glu-164 and Asp-184 on MRGPRX2. Additionally, there are hydrophobic interactions in sub-pocket 2 between the peptide and the binding pocket due to the large hydrophobic amino acids on Cortistatin-14. | ||
- | + | ==== Specific Traits ==== | |
- | ===== | + | ===== ''Disulfide bonds'' ===== |
- | + | In common Class A GPCRs the disulfide bond associated with the initiation of signal transduction is located on the extracellular domain of the 7 transmembrane helices. The disulfide bond of β2AR, a well studied Class A GPCR, occurs between (TM3) C106 and (EL) C191. This loop crosses through the middle of the extracellular domain, creating a barrier for bulkier substrates. In MRGPRX2, the disulfide bond bond is located between (TM4) C168 and (TM5) C180. This is a TM to TM disulfide bond as compared to a TM to EL disulfide bond seen in typical Class A GPCRs. This lack of interaction with the extracellular loop seen in MRGPRX2 causes the extracellular loop to flip on top of the TM4 and TM5 resulting in an open space for larger substrates to be able to interact with the receptor. | |
- | ===== | + | ===== ''Toggle Switch'' ===== |
- | == | + | In β2AR, and other Class A GPCRs, there is a what is known as a “toggle switch” Trp-286 which puts a limit on how close the TM helices can get to each other due to tryptophan being a very large, bulky amino acid. This results in a deep binding pocket. In contrast, in MRGPRX2 Trp-286 is replaced by Gly-236 <ref name="Cao"/> <ref name="Yang"/>. Glycine is a much smaller amino acid and thus allows the helices to close the base of the binding pocket. This causes MRGPRX2 to have a very shallow binding site and consequently allows an even greater number of ligands to be able to bind. |
- | ====== Sodium Binding | + | ===== ''PIF Motif'' ===== |
+ | |||
+ | ===== ''DRY Motif'' ===== | ||
+ | |||
+ | ===== ''Sodium Binding'' ===== | ||
== MRGPRX2 Signaling Pathway == | == MRGPRX2 Signaling Pathway == |
Revision as of 23:51, 28 March 2022
This Sandbox is Reserved from February 28 through September 1, 2022 for use in the course CH462 Biochemistry II taught by R. Jeremy Johnson at the Butler University, Indianapolis, USA. This reservation includes Sandbox Reserved 1700 through Sandbox Reserved 1729. |
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Human Itch GPCR
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References
- ↑ Thal, David M., et al. "Structural insights into G-protein-coupled receptor allostery." Nature, Nature Publishing Group, 04 July 2018, https://www.nature.com/articles/s41586-018-0259-z
- ↑ Zhang D, Zhao Q, Wu B. Structural Studies of G Protein-Coupled Receptors. Mol Cells. 2015 Oct;38(10):836-42. doi: 10.14348/molcells.2015.0263. Epub 2015, Oct 15. PMID:26467290 doi:http://dx.doi.org/10.14348/molcells.2015.0263
- ↑ 3.0 3.1 Cao, Can, et al. "Structure, function and pharmacology of human itch GPCRs." Nature, Nature Publishing Group, 17 November 2021, https://www.nature.com/articles/s41586-021-04126-6
- ↑ 4.0 4.1 Yang, Fan, et al. "Structure, function and pharmacology of human itch receptor complexes." Nature, Nature Publishing Group, 17 November 2021, https://www.nature.com/articles/s41586-021-04077-y