User:Glauco O. Gavioli Ferreira/Sandbox 1
From Proteopedia
(Difference between revisions)
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Maspin is a 42 kDa protein <ref name="numero7">PMID: 8290962</ref> and is inserted in clade B of the serpin superfamily, composed of papain-like enzymes and inhibitory serpins that target cytotoxic apoptotic proteases which are working incorrectly <ref name="numero3" />. Differently from other serpins, Maspin does not undergo the S to R transition <ref name="numero3" />. Instead, its G-helix is capable of undergoing a significant conformational change, that means this region of the molecule has some flexibility that allows movement. However, it is important to mention that studies have demonstrated, by superposing all of the maspin chains, a conformational heterogeneity at and around the G-helix <ref name="P" />. | Maspin is a 42 kDa protein <ref name="numero7">PMID: 8290962</ref> and is inserted in clade B of the serpin superfamily, composed of papain-like enzymes and inhibitory serpins that target cytotoxic apoptotic proteases which are working incorrectly <ref name="numero3" />. Differently from other serpins, Maspin does not undergo the S to R transition <ref name="numero3" />. Instead, its G-helix is capable of undergoing a significant conformational change, that means this region of the molecule has some flexibility that allows movement. However, it is important to mention that studies have demonstrated, by superposing all of the maspin chains, a conformational heterogeneity at and around the G-helix <ref name="P" />. | ||
Also maspin is not limited to a certain cell compartment, once it is found on nucleus, cytoplasm, membrane, and as a secreted protein, according to the cell type and tissue (1)(2). Currently, it is known that the subcellular location of maspin is important for its tumor suppressor activity, and not only its protein levels inside the cell. In the past, there was a controversy about it, once maspin was upregulated in some tumors, while downregulated in others (Nuclear localization of maspin is essential for its inhibition of tumor growth and metastasis). Then, its translocation to the nucleus was observed and maspin’s nuclear localization was related to its tumor suppressor function, (Nuclear localization of maspin is essential for its inhibition of tumor growth and metastasis). However, contrary to what is expected, it has never been found a nuclear localization sequence (NLS), nuclear export sequence (NES), neither a secretory leader sequence (SLS) on maspin structure (Bodenstine TM, Seftor REB, Khalkhali-Ellis Z, Seftor EA, Pemberton PA, et al. (2012) Maspin: molecular mechanisms and therapeutic implications. Cancer and Metastasis Reviews 31: 529–551.). | Also maspin is not limited to a certain cell compartment, once it is found on nucleus, cytoplasm, membrane, and as a secreted protein, according to the cell type and tissue (1)(2). Currently, it is known that the subcellular location of maspin is important for its tumor suppressor activity, and not only its protein levels inside the cell. In the past, there was a controversy about it, once maspin was upregulated in some tumors, while downregulated in others (Nuclear localization of maspin is essential for its inhibition of tumor growth and metastasis). Then, its translocation to the nucleus was observed and maspin’s nuclear localization was related to its tumor suppressor function, (Nuclear localization of maspin is essential for its inhibition of tumor growth and metastasis). However, contrary to what is expected, it has never been found a nuclear localization sequence (NLS), nuclear export sequence (NES), neither a secretory leader sequence (SLS) on maspin structure (Bodenstine TM, Seftor REB, Khalkhali-Ellis Z, Seftor EA, Pemberton PA, et al. (2012) Maspin: molecular mechanisms and therapeutic implications. Cancer and Metastasis Reviews 31: 529–551.). | ||
- | The tumor suppressor function of maspin is probably related to its activities, which are mainly inhibition of cell growth, invasion, tumoral migration, apoptosis stimuli, gene transcription regulation, angiogenesis inhibition (4) and prevention of oxidative damage of the proteome (5). Besides all of these functions, maspin also has an important role in the organization of the epiblast during early embryonic development | + | The tumor suppressor function of maspin is probably related to its activities, which are mainly inhibition of cell growth, invasion, tumoral migration, apoptosis stimuli, gene transcription regulation, angiogenesis inhibition (4) and prevention of oxidative damage of the proteome (5). Besides all of these functions, maspin also has an important role in the organization of the epiblast during early embryonic development <ref name="P" />. |
However, maspin lacks studies on non-tumoral cell lines, and its role on a normal condition might be different from its activity inside a tumoral lineages. | However, maspin lacks studies on non-tumoral cell lines, and its role on a normal condition might be different from its activity inside a tumoral lineages. | ||
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====RCL==== | ====RCL==== | ||
Maspin structure does not differ a lot from other clade B serpins. It has three ß-sheets, nine 𝛂-helices and a reactive center loop (RCL). The latter is exposed in ordinary serpins and has a great flexibility. | Maspin structure does not differ a lot from other clade B serpins. It has three ß-sheets, nine 𝛂-helices and a reactive center loop (RCL). The latter is exposed in ordinary serpins and has a great flexibility. | ||
- | Serpins that have mutations within their RCL which interfere with the ability to undergo the stressed (S) to relaxed (R) conformational change cannot inhibit proteases and maspin’s RCL is the one among serpins that has the most different sequence (Al-Ayyoubi M, Gettins PGW, Volz K (2004) Crystal structure of human maspin, a serpin with antitumor properties - Reactive center loop of maspin is exposed but constrained. Journal of Biological Chemistry 279: 55540–55544.; Silverman GA, Bird PI, Carrell RW, Church FC, Coughlin PB, et al. (2001) The serpins are an expanding superfamily of structurally similar but functionally diverse proteins - Evolution, mechanism of inhibition, novel functions, and a revised nomenclature. Journal of Biological Chemistry 276: 33293–33296. | + | Serpins that have mutations within their RCL which interfere with the ability to undergo the stressed (S) to relaxed (R) conformational change cannot inhibit proteases and maspin’s RCL is the one among serpins that has the most different sequence (Al-Ayyoubi M, Gettins PGW, Volz K (2004) Crystal structure of human maspin, a serpin with antitumor properties - Reactive center loop of maspin is exposed but constrained. Journal of Biological Chemistry 279: 55540–55544.; Silverman GA, Bird PI, Carrell RW, Church FC, Coughlin PB, et al. (2001) The serpins are an expanding superfamily of structurally similar but functionally diverse proteins - Evolution, mechanism of inhibition, novel functions, and a revised nomenclature. Journal of Biological Chemistry 276: 33293–33296. <ref name="P" />. |
- | Maspin does not present the conformational switch already discussed and does not have the consensus motif present in other serpins | + | Maspin does not present the conformational switch already discussed and does not have the consensus motif present in other serpins <ref name="P" />. The intact RCL is necessary for maspin’s activity as a tumor suppressor (Sheng, S., Pemberton, P. A., and Sager, R. (1994) J. Biol. Chem. 269, 30988 –30993), but there is no rearrangement of this structure, in other words, there is no S to R conformational change (Pemberton, P. A., Wong, D. T., Gibson, H. L., Kiefer, M. C., Fitzpatrick, P. A., Sager, R., and Barr, P. J. (1995) J. Biol. Chem. 270, 15832–15837 Bass, R., Moreno Ferna´ndez, A.-M. M., and Ellis, V. (2002) J. Biol. Chem. 277, 46845– 46848). Besides that, the RCL alone has been related to cell matrix adhesion and inhibition of cell invasion (Ngamkitidechakul, C., Warejcka, D. J., Burke, J. M., O’Brien, W. J., and Twining, S. S. (2003) J. Biol. Chem. 267, 31796 –31806). |
- | One of the reasons for maspin’s RCL being unable to undergo the conformational switch is its limited flexibility, as it is not flexible like other serpins | + | One of the reasons for maspin’s RCL being unable to undergo the conformational switch is its limited flexibility, as it is not flexible like other serpins <ref name="P" />. The RCL of Maspin is shorter by four residues and lies closer to the serpin core of the molecule, it is positioned further “back”, in other words closer to the N-terminal, than all of the other known serpin RCL structures (Crystal Structure of Human Maspin, a Serpin with Antitumor Properties). Besides that, the RCL of Maspin is stabilized by bonding interactions with amino acid side chains of the ß-sheet C, leading to a more rigid structure (Crystal Structure of Human Maspin, a Serpin with Antitumor Properties). Additionally, the breach, where the cleaved RCL is inserted and which is present in other serpins, is not seen on maspin (Crystal Structure of Human Maspin, a Serpin with Antitumor Properties). |
A curious phenomenon that happens with maspin is the aggregation of dimers of tetramers, generating octamers in vitro. There is strong evidence that the hydrophobic residues on the RCL are responsible for the aggregation (Crystal Structure of Human Maspin, a Serpin with Antitumor Properties). The hydrophobic residues Ile-344, Val-336, Ile-341, Leu-342, Pro-337 and adjacent aminoacids present on the RCL are completely exposed to the solvent (Crystal Structure of Human Maspin, a Serpin with Antitumor Properties). Other types of intermolecular interactions, like minor salt links and hydrogen bonds between the s3C and s4C strands of opposing tetramers, also contribute to maintaining the structure, but the main force that results in the octamer are the hydrophobic associations (Crystal Structure of Human Maspin, a Serpin with Antitumor Properties). Taking into account that the RCL is responsible for functions of cell matrix adhesion and inhibition of cell invasion (Ngamkitidechakul, C., Warejcka, D. J., Burke, J. M., O’Brien, W. J., and Twining, S. S. (2003) J. Biol. Chem. 267, 31796 –31806), its hydrophobic nature is expected to be functionally important (Crystal Structure of Human Maspin, a Serpin with Antitumor Properties). | A curious phenomenon that happens with maspin is the aggregation of dimers of tetramers, generating octamers in vitro. There is strong evidence that the hydrophobic residues on the RCL are responsible for the aggregation (Crystal Structure of Human Maspin, a Serpin with Antitumor Properties). The hydrophobic residues Ile-344, Val-336, Ile-341, Leu-342, Pro-337 and adjacent aminoacids present on the RCL are completely exposed to the solvent (Crystal Structure of Human Maspin, a Serpin with Antitumor Properties). Other types of intermolecular interactions, like minor salt links and hydrogen bonds between the s3C and s4C strands of opposing tetramers, also contribute to maintaining the structure, but the main force that results in the octamer are the hydrophobic associations (Crystal Structure of Human Maspin, a Serpin with Antitumor Properties). Taking into account that the RCL is responsible for functions of cell matrix adhesion and inhibition of cell invasion (Ngamkitidechakul, C., Warejcka, D. J., Burke, J. M., O’Brien, W. J., and Twining, S. S. (2003) J. Biol. Chem. 267, 31796 –31806), its hydrophobic nature is expected to be functionally important (Crystal Structure of Human Maspin, a Serpin with Antitumor Properties). | ||
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====Bulge around D and E-helices==== | ====Bulge around D and E-helices==== | ||
- | Maspin also contains a buried salt bridge on the periphery of the conserved region called ‘shutter’ which is located in the center of the serpin fold that is important for controlling conformational change in inhibitory molecules. This region, which is formed by residues from D-helix, B-helix and s2A, causes a prominent bulge at the N-terminal end of s1A and reveals a cavity beneath the D-helix | + | Maspin also contains a buried salt bridge on the periphery of the conserved region called ‘shutter’ which is located in the center of the serpin fold that is important for controlling conformational change in inhibitory molecules. This region, which is formed by residues from D-helix, B-helix and s2A, causes a prominent bulge at the N-terminal end of s1A and reveals a cavity beneath the D-helix <ref name="P" />. |
- | It suggests that the salt bridge region, as in other serpins, may have some relevance at the interaction with a binding partner. Furthermore, the distortion in secondary structure caused by the salt bridge introduces Lys114 into the center of a cluster of conserved positively charged waste. Once maspin is able to bind heparin, it is possible that these residues perform as a heparin binding site | + | It suggests that the salt bridge region, as in other serpins, may have some relevance at the interaction with a binding partner. Furthermore, the distortion in secondary structure caused by the salt bridge introduces Lys114 into the center of a cluster of conserved positively charged waste. Once maspin is able to bind heparin, it is possible that these residues perform as a heparin binding site <ref name="P" />. |
====G-helix==== | ====G-helix==== | ||
- | Maspin is able to undergo conformational change in and around the G-helix, and has an open and closed form. This is a real putative cofactor binding site and may determine maspin’s function | + | Maspin is able to undergo conformational change in and around the G-helix, and has an open and closed form. This is a real putative cofactor binding site and may determine maspin’s function <ref name="P" />. |
- | As said before, the region at and around the G-helix has flexibility to undergo a conformational change and, as a consequence, its charged residues are reorganized on the G-helix and a central part of the helix structure becomes negative. The two structures, reflecting maspin in the open and closed conformation, show that rotation of the G-helix alters the local charge distribution, suggesting that this movement represents a conformational “switch”, what researchers have implied be a cofactor binding site under conformational control based on G-helix negative charged patch modulation | + | As said before, the region at and around the G-helix has flexibility to undergo a conformational change and, as a consequence, its charged residues are reorganized on the G-helix and a central part of the helix structure becomes negative. The two structures, reflecting maspin in the open and closed conformation, show that rotation of the G-helix alters the local charge distribution, suggesting that this movement represents a conformational “switch”, what researchers have implied be a cofactor binding site under conformational control based on G-helix negative charged patch modulation <ref name="P" />. |
== Physical interactions == | == Physical interactions == |
Revision as of 19:05, 18 June 2022
SerpinB5 (Maspin)
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References
- ↑ 1.0 1.1 Khalkhali-Ellis Z. Maspin: the new frontier. Clin Cancer Res. 2006 Dec 15;12(24):7279-83. doi: 10.1158/1078-0432.CCR-06-1589. PMID:17189399 doi:http://dx.doi.org/10.1158/1078-0432.CCR-06-1589
- ↑ Banias L, Jung I, Gurzu S. Subcellular expression of maspin – from normal tissue to tumor cells. World J Meta-Anal 2019; 7(4): 142-155. doi: https://dx.doi.org/10.13105/wjma.v7.i4.142
- ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 3.9 Law RH, Irving JA, Buckle AM, Ruzyla K, Buzza M, Bashtannyk-Puhalovich TA, Beddoe TC, Nguyen K, Worrall DM, Bottomley SP, Bird PI, Rossjohn J, Whisstock JC. The high resolution crystal structure of the human tumor suppressor maspin reveals a novel conformational switch in the G-helix. J Biol Chem. 2005 Jun 10;280(23):22356-64. Epub 2005 Mar 10. PMID:15760906 doi:http://dx.doi.org/10.1074/jbc.M412043200
- ↑ 4.0 4.1 4.2 4.3 Law RH, Zhang Q, McGowan S, Buckle AM, Silverman GA, Wong W, Rosado CJ, Langendorf CG, Pike RN, Bird PI, Whisstock JC. An overview of the serpin superfamily. Genome Biol. 2006;7(5):216. doi: 10.1186/gb-2006-7-5-216. Epub 2006 May 30. PMID:16737556 doi:http://dx.doi.org/10.1186/gb-2006-7-5-216
- ↑ Huntington JA, Read RJ, Carrell RW. Structure of a serpin-protease complex shows inhibition by deformation. Nature. 2000 Oct 19;407(6806):923-6. PMID:11057674 doi:10.1038/35038119
- ↑ Zou Z, Anisowicz A, Hendrix MJ, Thor A, Neveu M, Sheng S, Rafidi K, Seftor E, Sager R. Maspin, a serpin with tumor-suppressing activity in human mammary epithelial cells. Science. 1994 Jan 28;263(5146):526-9. PMID:8290962