Sandbox Reserved 1767

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 12: Line 12:
== Relevance ==
== Relevance ==
=== Cell Proliferation ===
=== Cell Proliferation ===
-
The Ras-Raf signaling cascade as a whole is fundamental for cell growth and survival. When a membrane bound GTPase is activated by extracellular growth proteins, it binds to a GTP molecule which then activates Raf and the signaling cascade. However, Raf is typically kept in an auto-inhibited form. When MRAS is GTP-bound rather than GDP-bound, it triggers the formation of the SMP complex which . Extra-cellular growth factors trigger both formation of the SMP complex and Ras-Raf interaction, however, SHOC-2-PP1C must first
+
The Ras-Raf signaling cascade as a whole is fundamental for cell growth and survival. When a membrane bound GTPase is activated by extracellular growth proteins, it binds to a GTP molecule which then activates Raf and the signaling cascade. However, Raf is typically kept in an auto-inhibited form. When MRAS is GTP-bound rather than GDP-bound, it triggers the formation of the SMP complex. The active site of PP1C when in the complex is responsible for removing the residue responsible for auto-inhibition. Extra-cellular growth factors trigger both formation of the SMP complex and Ras-Raf interaction through the binding of GTP to a Ras-protein, however, the SMP complex must remove the auto-inhibition before Ras and Raf can interact. Since SHOC2-PP1C-MRAS plays such a crucial role in the activation of the signaling cascade, many scientists say that cell proliferation is regulated by the SMP complex rather than the Ras-Raf interaction.
=== Cancer and RASopathies ===
=== Cancer and RASopathies ===
-
- mutations are at the protein-protein interaction surfaces, leads to more stability of the complex and increased interaction energy of SHOC2 with PP1c and/or MRAS.
+
Mutations in any of the 3 subunits of SHOC2-PP1C-MRAS can lead to cancer or a developmental disability called Rasopathy. Mutations occur at the protein-protein interaction surfaces, leading to more stability of the complex as well as increased interaction energy of SHOC2 with PP1c and/or MRAS. For SHOC2 and PP1C, the mutations lead to amino acid changes on the interaction surfaces, causing a higher affinity for binding. Mutations to MRAS lead to consistent GTP-loading, so the complex is constantly being triggered to form, leading consistent activation of the cell-proliferation pathway even without the presence of the external growth factors. Because the system is no longer regulated, growth of cells when its not needed leads to cancer and/or RASopathies. Furthermore, some mutations in PP1C lead to increased active site enzymatic activity, also leading to increased cell growth.
-
- other RAS proteins can bind in a mutated complex rather than just MRAS
+
 
-
- SHOC2 is necessary in all cases
+
== Structure of Subunits ==
== Structure of Subunits ==
=== SHOC2 ===
=== SHOC2 ===
Line 36: Line 35:
=== Hydrophobic Binding Site ===
=== Hydrophobic Binding Site ===
PP1C has a <scene name='95/952695/Hydrophobic_bindning_site/3'>hydrophobic binding site</scene> adjacent to its active site. The majority of PP1C targets are able to bind through a specific motif that is recognized by the hydrophobic groove. In the Ras/Raf signaling cascade, the region of Raf that is C-terminal to the phosphate group binds to the hydrophobic groove, and the remaining residues bind to the hydrophobic region of SHOC2. This binding to SHOC2 is what allows the SMP complex to be more specific than PP1C on its own.
PP1C has a <scene name='95/952695/Hydrophobic_bindning_site/3'>hydrophobic binding site</scene> adjacent to its active site. The majority of PP1C targets are able to bind through a specific motif that is recognized by the hydrophobic groove. In the Ras/Raf signaling cascade, the region of Raf that is C-terminal to the phosphate group binds to the hydrophobic groove, and the remaining residues bind to the hydrophobic region of SHOC2. This binding to SHOC2 is what allows the SMP complex to be more specific than PP1C on its own.
 +
== Future Directions ==
== Future Directions ==
-
- knockdown of SHOC2
+
The knockdown of SHOC2 is being studied as a target for cancer and RASopathy treatment. Although MRAS is the protein that triggers the formation of the complex, SHOC2 is the anchoring location for both MRAS and PP1C. Without SHOC2, the complex would not form and SER259 would not be dephosphorylated. MRAS could be triggered and moved towards the cell membrane, but no complex will form and Raf will remain in the auto-inhibited form. Additionally, there are other RAS proteins that can form an SMP-like complex. If MRAS were to be depleted, other RAS proteins could step in place of MRAS. PP1C is able to dephosphorylated other proteins on it's own, therefore it is not a good target as depletion of PP1C could lead to other issues. Depletion of SHOC2 is the most promising treatment that has been researched. There is also possibility that changing the confirmation of RAS Switch II could lead to decreased cell proliferation.

Revision as of 21:28, 2 April 2023

This Sandbox is Reserved from February 27 through August 31, 2023 for use in the course CH462 Biochemistry II taught by R. Jeremy Johnson at the Butler University, Indianapolis, USA. This reservation includes Sandbox Reserved 1765 through Sandbox Reserved 1795.
To get started:
  • Click the edit this page tab at the top. Save the page after each step, then edit it again.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Help:Editing

Contents

SHOC2-PP1C-MRAS

Caption for this structure

Drag the structure with the mouse to rotate

Protopedia Resources

<protopedia resources/>

</StructureSection>

References

  1. Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644

</StructureSection>

Student Contributors

<student contributors/>

Personal tools