Introduction

(SMP) holophosphatase complex functions as a key regulator of the receptor tyrosine kinase (RTK) signaling pathway by removing an inhibitory phosphate on the RAF family of proteins to allow for MAPK signaling.^[1] This interaction of the RTK-Ras pathway and the SMP complex drives cell proliferation.^[2] The SMP complex is made of three subunits, SHOC2, PP1C, and MRAS. Each of these subunits has a different shape that corresponds to its different function. The SHOC2 subunit uses a crescent shape to enhance substrate interactions and complex stability.^[3] PP1C is a phosphatase, and this subunit contains the catalytic site of the complex which dephosphorylates the N-terminal phosphoserine (NTpS) of RAF green link here.^[3] The MRAS subunit binds to GTP which triggers assembly of the SMP complex. The C-terminus of the MRAS subunit localizes the complex to the cell membrane.^[3] Mutations in one or multiple of these subunits leads to over-activation of the signaling pathway, which may result in cancer and developmental disorders called RASopathies.^[1]

There are many regulatory mechanisms that serve as a lock on this RAS-MAPK pathway, decreasing the likelihood of unintentional pathway activation. One is a protein dimer called 14-3-3 that keeps inactive RAF localized to the cytoplasm. An N-terminal phosphorylated serine keeps RAF bound to this protein dimer, and when the SMP complex is assembled, the catalytic subunit, PP1C, removes the phosphate group from the serine, releasing RAF from the 14-3-3 dimer, and activating the RAS-MAPK cell proliferation pathway.

In all images and animations, SHOC2 will be shown as cyan blue, MRAS as lime, and PP1C as violet. Other important components involved in the function of the SMP complex include the 14-3-3 dimer and Raf, which will be shown in salmon and slate-blue, respectively.

Structure of Subunits

SHOC2

The presence of SHOC2 is essential for complex formation. It a crescent shaped complex that serves as a bridge for PP1C and MRAS, maximizing interaction between the three subunits of the SMP complex. SHOC2 contains a large leucine rich region (LRR) that provides stability and localizes subunit PP1C to the membrane. Houseman SHOC2 only undergoes a 6° conformational change when PP1C and MRAS bind, showing SHOC2 is a scaffolding protein that provides a favorable interface for complex formation. SHOC2 depletion is being studied as a therapeutic approach for RAS-driven cancers due to large scale interactions of the subunits only being made possible due to SHOC2. ^[1]. SHOC2 and PP1C first engage in binding with each other via an N-terminal RVXF motif on SHOC2 that is complimentary to a sequence on PP1C. SHOC2 residues V64 and F66 embed in the complimentary region of PP1C, enhancing SHOC2 affinity for PP1C. SHOC2 bind MRAS-GTP through B strands of a LRR that interacts with a hydrophobic region of MRAS-GTP further stabilizing the complex. KWON

PP1C

The Protein phosphatase complex 1 (PP1C) subunit contains the catalytic site of the SMP complex. The PP1C subunit is a phosphatase enzyme responsible for the removal of a phosphate group on an N-terminal phosphoserine (NTpS) on RAF. .^[3] This dephosphorylation event allows for pathway activation. PP1C binds to SHOC2 and MRAS-GTP in a specific orientation that leaves this catalytic site accessible for substrate binding. PP1C cannot act independently from the SMP complex because it lacks intrinsic substrate selectivity.^[3] Therefore, PP1C requires the presence of SHOC2 and MRAS to function properly, whereas SHOC2 and MRAS may interact in a binary complex without the presence of PP1C ^[2] SMP complex formation is initially mediated by SHOC2 and PP1C, then stabilized by the GTP interactions in MRAS and SHOC2.^[1] Similarly to SHOC2, PP1C does not undergo a significant conformational change when SHOC2 and MRAS-GTP bind. The lack of conformational change shows that the structure of PP1C is not dependent on the SMP complex, but in order to act as a phosphatase it must be bound to the complex.^[3]. PP1C is involved in many different cellular signaling pathways including protein synthesis, muscle contraction, and even carbohydrate metabolism. Wolfgang It plays an essential role in regulation of many pathways, not just cell proliferation. In all these pathways, including the SMP pathway, PP1C does not exist as a monomer, it is present in holoenzyme form complex with one of two regulatory subunits ensuring there is no sporadic pathway activation. Schulman

PP1C activity is regulated by short linear interaction motifs or PP1C-binding regulatory proteins.^[2] The regulatory proteins bind to small linear motifs in PP1C, like RVXF.^[3] The RVXF motif and interaction site is located in PP1C through the N-terminal disordered region, which ^[1] There is a direct interaction between the RVXF motif of SHOC2 and the hydrophobic RVXF-binding pocket of PP1C.^[2][1]

MRAS

Ras proteins are GTP dependent switches that are associated with the plasma membrane.^[3] Ras proteins often regulate cycles during signal transduction. MRAS, one of the subunits in the SMP complex, is a RAS protein specific to SHOC2 and the SMP complex. Other RAS proteins may bind to SHOC2, but MRAS induces the complex formation with a significantly lower Kd (dissociation constant), thus has the strongest connection.^[3] The interface between SHOC2 and MRAS consists of two switches, Switch I and Switch II.^[3] The switch regions were the only regions in MRAS to conformationally change, depending on the state of GTP.^[3]

The formation of the SMP complex is stabilized and driven by the MRAS GTP-bound active state.^[2][1] The tertiary structure formation is GTP dependent on multiple RAS forms.^[2] When GTP is bound to MRAS, the SMP complex forms and MRAS is in the active form. When GDP is bound to MRAS, the SMP complex does not form and MRAS is in the inactive form.^[3] In order for MRAS to bind to SHOC2, MRAS must be in the active GTP bound state. When the inactive GDP is bound to MRAS, steric clashes between Switch 1 on MRAS and PP1C prevent SHOC2 binding and the SMP complex formation.^[3]

Additionally, the surface of MRAS that is buried in the complex overlaps the surfaces used to engage RAF, requiring two separate MRAS proteins to activate a single RAF molecule, one in the SMP complex and one to dephosphorylated Raf to activate the MAPK signaling cascade. The SMP complex is localized to the cell membrane or other RAS isoforms by the palmitoylated, C-terminus end of MRAS.^[2] In its , Ras has an extended, palmitoylated C-terminal helix which allows it to bind to the cell membrane.^[3]

RAF

Autoinhibited Confirmation

The Ras-Raf signaling cascade will be inhibited without the dephosphorylation of Raf at Ser259. There is a dimer present in the cytoplasm that interacts with Raf through hydrogen bonds between R129 of 14-3-3 and Ser259 of Raf when Ser259 is phosphorylated. This interaction causes an as 14-3-3 restricts Raf to the cytoplasm and sterically inhibits Raf from binding with activated Ras. This interaction is crucial in regulating cell proliferation, as it prevents cell growth in the absence of a signal. Extracellular growth factors trigger GTP to bind to MRAS, which triggers SMP formation. Upon SMP complex formation, PP1C is brought into close proximity of Ras, leading to the dephosphorylation of Ser259 of Raf by the active site of PP1C. Once dephosphorylated, Raf is in the , allowing for the interaction of Ras and Raf, and the initiation of the signaling cascade.^[4]

Signaling Cascade and Conformational Changes

Switch I and Switch II

SHOC2-PP1C-MRAS is a central gatekeeper in receptor tyrosine kinase signaling 1. Figure 1 shows the specific pathways SHOC2-PP1C-MRAS mediates. When MRAS is bound to GDP, shown in the left of figure 1, Raf is bound to a 14-3-3 protein dimer restricting it to the cytoplasm. When MRAS-GDP is exchanged for GTP via a nucleotide exchange factor GEF, a conformational change occurs. This change figure 2, causes a shift from the open to closed conformation of Switch I. figure 3 Green link The Switch I (SWI) region is made up of residues 42-48 of the MRAS domain. 1 These residues are crucial for the binding of MRAS, SHOC2, and PP1C because MRAS undergoes a conformational change that allows for SMP complex assembly upon GTP binding. Figure 2 When GTP is bound to MRAS, it is in the “closed conformation” because hydrogen bond interactions between the γ phosphate of GTP and residues in the SWI region of MRAS cause SWI to adopt a closed conformation. The closed conformation allows for the binding of SHOC2 and PP1C because there is no steric clash GREEN LINK between the SWI region of MRAS and the surface of SHOC2 when GTP is bound. Green link. The only large-scale conformational change occurs in the MRAS subunit. When GDP is bound to the MRAS domain, it is in the “open” conformation. Green link Since the γ-phosphate is not bound to GDP, there are no hydrogen bond interactions with the oxygens of the γ-phosphate group and the MRAS SWI region, causing MRAS to adpot an "open" conformation. Since SHOC2 and PP1C do not undergo much conformational change, they are in a slow equilibrium of binding and unbinding until MRAS-GTP binds to SHOC2, and the complex is assembled. take out table as well

Figure 1. Residues Interacting at SWI and SWII at subunits SHOC2 and PP1C.^[3].

TAKE out this next paragraph, just don't want to delete green links Switch I (SWI) and Switch II (SWII) are located between the SHOC2 and MRas subunits. When GTP is hydrolyzed to GDP, Switch I and Switch II relax, in the relaxed state SHOC2 cannot bind to MRas. Two Residues from MRas interact with the gamma phosphate on GTP, changing the complex to the closed confirmation. When GTP is bound to , it triggers the assembly of the SHOC2 Complex. When SWI is in its open confirmation, PP1C cannot bind with MRas due to the steric clashes, but when GTP binds and SWI is in its closed confirmation, PP1C can bind without hinderance. In a mutated complex, other RAS proteins can replace MRas making cell proliferation more likely. SHOC2-PP1C-MRas may be used as a therapeutic target for cancer treatments through changing the confirmation of the .

Ras/Raf

Figure 2: MRAS binding sites with SHOC2, PP1C, and RAF (PDB 7DSO).^[3].

Ras proteins are GTP-dependent intracellular switches that are anchored to the plasma membrane. Ras proteins activate RAF kinases through direct binding and membrane recruitment, resulting in RAF dimerization and pathway activation. ^[3]. Ras has a hydrophobic fatty acid tail, keeping it anchored to the membrane. There are no known membrane interacting regions on SHOC2 and PP1C, meaning MRAS likely recruits them to the membrane. Significant amount of steric overlap is seen in MRAS for the binding sites of PP1C, SHOC2, and Raf. MRAS is shown in green, with the SHOC2 binding site colored cyan, the PP1C binding site colored green, and the RAF binding site shown in red on a different RAS protein. Hence, multiple Ras proteins are required for further activation of the receptor tyrosine kinase pathway. Due to the significant overlap in binding domains, one Ras molecule is needed to recruit SHOC2 and PP1C to the membrane, and one Ras molecule is needed activate Raf. The ability of Ras-GTP to cluster at the membrane is a crucial capability for this protein complex. This anchoring is possible due to the presence of a hydrophobic fatty acid tail on Ras. The presence of this palmitoyl tail on Raf also localizes the complex to the cell membrane, allowing only for 2D movement and increasing local concentrations of the players needed in this signaling pathway.

Structure of Active Site

3-Metal Ion Catalysis

The of the SHOC2-PP1C-MRAS complex resides in the PP1C subunit.^[5] The role of PP1C is to dephosphorylate SER259 of Raf so that the signaling cascade can start. The active site is unchanged upon the binding of the complex, however, SHOC2 and MRAS aid in the specificity of the enzymatic activity as PP1C is able to dephosphorylate many different targets on its own, with almost 100 PP1C targets found.^[4] The full mechanism for the catalytic activity is unknown, however, there are 3 metal ions present (2-Mg2+ and 1-Cl-) to stabilize the waters present in the active site. Additionally, the substrate binds through hydrogen bonds with the main chain and side chain atoms of the catalytic residues. Mutations in the active site lead to increased activity, causing the Ras/Raf signaling cascade to be triggered more frequently.^[5]

Hydrophobic Binding Site

PP1C has a adjacent to its active site.^[5] The majority of PP1C targets are able to bind through a specific motif that is recognized by the hydrophobic groove. In the Ras/Raf signaling cascade, the region of Raf that is C-terminal to the phosphate group binds to the hydrophobic groove, and the remaining residues bind to the hydrophobic region of SHOC2. This binding to SHOC2 is what allows the SMP complex to be more specific than PP1C on its own.^[5] PP1C also has a singular cysteine (C291) present in the hydrophobic binding site in order to provide further stability to the substrate-protein interaction.

Significance

Cell Proliferation

The Ras-Raf signaling cascade is fundamental for cell growth and survival. Ras is a membrane-bound monomeric GTPase that, when activated by extracellular growth proteins, an inactive GDP is exchanged for a GTP molecule which activates Ras and starts the signaling cascade. When GDP is bound to Ras, it is in the closed confirmation and does not interact with Raf or other proteins. When MRAS is GTP-bound, it triggers the formation of the SMP complex. The active site of PP1C, when in complex, is responsible for removing the phosphate group from Ser259 of Raf that causes steric clash, and therefore, preventing auto-inhibition and releasing Raf. Extracellular growth factors initially trigger formation of the SMP complex which, after activation of Raf, allows for the interaction of Ras and Raf through a second Ras protein. This interaction triggers the Ras-Raf signaling cascade, which is what ultimately leads to cell proliferation. SHOC2-PP1C-MRAS plays a crucial gatekeeping role in the activation of the signaling cascade, making it a main regulation point of cell proliferation.

Cancer and Rasopathies

Mutations in any of the 3 subunits of SHOC2-PP1C-MRAS can lead to cancer or a family of developmental disability called Rasopathies. Mutations can occur at any of the SMP interfaces, leading to increased interaction energy and stability.^[1] For SHOC2 and PP1C, common mutations lead to amino acid changes on the interaction surfaces, causing a higher affinity for binding.^[6] Mutations to MRAS lead to consistent GTP-loading, causing an increase in the formation of the SMP complex and there is consistent activation of the cell-proliferation pathway in the absence of external growth factors. Common mutations in PP1C lead to increased active site activity, causing an increase in the Raf proteins that are active and available to bind to Ras. When the system is unregulated, cells proliferate regardless of external signals, leading to cancer and/or RASopathies.