User:Preston Roa/Sandbox 1

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Broadly the extracellular reactions between GLP-1 and GLP-1R lie between residues 15-32 on the peptide GLP-1. Residues L32, F28, W31 of the peptide and L36 and W214 of the receptor all utilize hydrophobic interactions or van der waals for affinity and binding, but exclusively F28, W31, and W214 have pi stackin which future maximizes interactions to increase binding. Furthermore, there is a strong hydrogen bond between D15 of the peptide to the R380 receptor. Van der Waals interactions continue on the residues Y19, L20, and V16 on the peptide as they interact with L141 and L210 of the receptor. Another hydrogen bond between E27 and Q21 also occurs. Finally, there is a patch of extensive hydrogen bonding in an almost chainlike fashion goin from L32 of the receptor to E21 of the peptide, to R299 of the receptor, to the S17 of the peptide which then interacts with Y205 and T298 both of the receptor.
Broadly the extracellular reactions between GLP-1 and GLP-1R lie between residues 15-32 on the peptide GLP-1. Residues L32, F28, W31 of the peptide and L36 and W214 of the receptor all utilize hydrophobic interactions or van der waals for affinity and binding, but exclusively F28, W31, and W214 have pi stackin which future maximizes interactions to increase binding. Furthermore, there is a strong hydrogen bond between D15 of the peptide to the R380 receptor. Van der Waals interactions continue on the residues Y19, L20, and V16 on the peptide as they interact with L141 and L210 of the receptor. Another hydrogen bond between E27 and Q21 also occurs. Finally, there is a patch of extensive hydrogen bonding in an almost chainlike fashion goin from L32 of the receptor to E21 of the peptide, to R299 of the receptor, to the S17 of the peptide which then interacts with Y205 and T298 both of the receptor.
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<scene name='10/1037514/Extracellular_interactions/3'>Extracellular Interactions</scene>
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<scene name='10/1037514/Extracellular_interactions/4'>Pi Stacking and Hydrophobic Interactions</scene>
<scene name='10/1037514/Extracellular_interactions_2/2'>Extracellular Interactions 2</scene>
<scene name='10/1037514/Extracellular_interactions_2/2'>Extracellular Interactions 2</scene>

Revision as of 18:14, 29 April 2024

GLP-1

GLP-1 6X18

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References

[1] [2] [3]

Student Contributors

  • Preston Roa
  • Jack Guckien
  • Sam Reichenbach

Proteopedia Page Contributors and Editors (what is this?)

Preston Roa

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