This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
User:Eric Martz
From Proteopedia
(Difference between revisions)
(→Principal Author or Architect of (Elsewhere):) |
(→Principal Author or Architect of (Elsewhere):) |
||
| Line 64: | Line 64: | ||
* [http://firstglance.jmol.org FirstGlance in Jmol], a general-purpose molecular visualization tool which has been adopted by [http://www.nature.com/nature ''Nature''] (see the ''3D View'' links), [http://consurf.tau.ac.il the ConSurf Server], and [http://firstglance.jmol.org/adoption.htm other journals and structural bioinformatics servers]. Available 2005-present. | * [http://firstglance.jmol.org FirstGlance in Jmol], a general-purpose molecular visualization tool which has been adopted by [http://www.nature.com/nature ''Nature''] (see the ''3D View'' links), [http://consurf.tau.ac.il the ConSurf Server], and [http://firstglance.jmol.org/adoption.htm other journals and structural bioinformatics servers]. Available 2005-present. | ||
* Visualization for the [http://consurf.tau.ac.il the ConSurf Server] developed by Nir Ben-Tal, Fabian Glaser, Elana Erez and others, which colors amino acids by evolutionary conservation, completely automatically. Available 2002-present. | * Visualization for the [http://consurf.tau.ac.il the ConSurf Server] developed by Nir Ben-Tal, Fabian Glaser, Elana Erez and others, which colors amino acids by evolutionary conservation, completely automatically. Available 2002-present. | ||
| - | * [http://top5.molviz.org Top Five 3D Molecular Visualization Technologies for the Rest Of Us]. | + | * [http://top5.molviz.org Top Five 3D Molecular Visualization Technologies for the Rest Of Us]. Page available 2007-present. |
* [http://molviz.org MolviZ.Org] with tutorials in Jmol and molecular visualization resources for educators and students. Included is a [http://dna.molviz.org DNA Structure Tutorial] started in 1996, and now (in collaboration with [http://biomodel.uah.es/personal/inicio.htm Angel Herráez]) available in 5 languages. | * [http://molviz.org MolviZ.Org] with tutorials in Jmol and molecular visualization resources for educators and students. Included is a [http://dna.molviz.org DNA Structure Tutorial] started in 1996, and now (in collaboration with [http://biomodel.uah.es/personal/inicio.htm Angel Herráez]) available in 5 languages. | ||
* [http://molvisindex.org World Index of Molecular Visualization Resources]. Available 2000-present. | * [http://molvisindex.org World Index of Molecular Visualization Resources]. Available 2000-present. | ||
Revision as of 17:58, 24 June 2008
Contents |
Eric Martz
Professor Emeritus, University of Massachusetts, Amherst MA USA
emartz at microbio dot umass dot edu
martz.molviz.org
Some Proteopedia Pages to Which I've Contributed
Topic Pages - Molecules
- Major Histocompatibility Complex Class I
- Proton Channels, which includes an animated morph.
- Recoverin, a calcium-activated myristoyl switch
- User:Eric Martz/Nucleosomes (a protected page for lectures), which was copied into Nucleosomes so others can improve it.
PDB Code Pages
- 2ic8 (green links in overview)
- 2rd0 Phosphatidylinositol kinase oncogene: I authored scenes similar to many of the figures from the publication.
Topic Pages - Structural Bioinformatics
- Amino Acids
- Atomic coordinate file
- Biological Unit
- Conservation, Evolutionary
- Eric Martz's Favorites
- Highest impact structures of all time.
- Protein Data Bank
- Morphs NEEDS WORK
- Personal favorites
- Sites, Functional
- Standard Residues and Non-Standard Residues
Meta Pages
- Help:Copying FirstGlance Scenes into Proteopedia
- Help:Editing
- Help:Protected Pages
- Proteopedia:About
- Proteopedia:Namespaces
- Proteopedia:Policy
- Proteopedia:Problems
- Proteopedia:Topic Pages
- Proteopedia:Wishlist
Workshops
- One-day courses in molecular visualization and structural bioinformatics for researchers and educators.
Principal Author or Architect of (Elsewhere):
- FirstGlance in Jmol, a general-purpose molecular visualization tool which has been adopted by Nature (see the 3D View links), the ConSurf Server, and other journals and structural bioinformatics servers. Available 2005-present.
- Visualization for the the ConSurf Server developed by Nir Ben-Tal, Fabian Glaser, Elana Erez and others, which colors amino acids by evolutionary conservation, completely automatically. Available 2002-present.
- Top Five 3D Molecular Visualization Technologies for the Rest Of Us. Page available 2007-present.
- MolviZ.Org with tutorials in Jmol and molecular visualization resources for educators and students. Included is a DNA Structure Tutorial started in 1996, and now (in collaboration with Angel Herráez) available in 5 languages.
- World Index of Molecular Visualization Resources. Available 2000-present.
- Atlas of Macromolecules. Available 2002-present.
- With Jaime Prilusky, the PDB Lite search interface for students and beginners to find published macromolecular models. Available 1998-present.
- An incomplete History of Macromolecular Visualization which includes a list of the earliest macromolecules solved by X-ray crystallography. Available 1997-present.
- molvis-list, founded in 1995 as the RasMol List. Maintained largely by Tim Driscoll/molvisions.com since 2004.
And in an earlier era
- Protein Explorer 1998-present.
- The RasMol Home Page founded 1996.
