File list
From Proteopedia
 Date |
Name | User | Size | Description |
|---|---|---|---|---|
| 05:41, 2 November 2009 | 1s72ALPHACplusccapuro.PDB.gz (file) | Wayne Decatur | 154 KB | (1s72 where nucleic and proteins just phosphorus and alpha carbon backbone but where i added back CCA-puro from 1ffz as chain 5) |
| 02:27, 2 November 2009 | 1s72simplified.PDB.gz (file) | Wayne Decatur | 314 KB | (Ran Eric Martz's alphac 2.0 on 1s72 to simplify) |
| 01:38, 2 November 2009 | Lsu_side_and_front_white_background.png (file) | Wayne Decatur | 292 KB | (1s72 from side and front using Swiss PDB viewer) |
| 20:21, 1 November 2009 | 3ews3g0hJUSTSTARTEND.pdb (file) | Wayne Decatur | 126 KB | (3ews and 3g0h in a single file as they had been morphed by Yale Server. The intermediate models were removed and the extra atoms for 3ews added back in by Magicfit in Swiss PDB viewer. ) |
| 05:34, 1 November 2009 | F1-1.jpg (file) | Liuqing Yang | 54 KB | |
| 05:09, 1 November 2009 | Pathway.JPG (file) | Liuqing Yang | 61 KB | |
| 05:08, 1 November 2009 | Rauvolfia_serpentina.jpg (file) | Liuqing Yang | 14 KB | |
| 04:22, 1 November 2009 | 3g0hSIMPLER.jpg (file) | Wayne Decatur | 257 KB | (The default image Image:3g0h.png looked quite complex so I made a simpler one still in the style of many of the default images.) |
| 01:21, 1 November 2009 | 3ewsBIOLUNIT1.pdb.gz (file) | Wayne Decatur | 141 KB | (Biological unit 1 since asymmetric unit has 2) |
| 23:13, 31 October 2009 | 3ews3g0hmorphBETTER.pdb.gz (file) | Wayne Decatur | 484 KB | (Morph of 3ews to 3g0h. Improved by adding back the ligands and RNA and the extra atoms to model 1 that came from using magicFit to translate it over automatically in Swiss-PDB Viewer) |
| 16:13, 31 October 2009 | Mutants.pdb (file) | Oleg Kovalevskiy | 942 KB | (PDB file containing superposition of wild type HlyIIR and engineered variants: dS-HlyIIR and dThr-HlyIIR) |
| 04:49, 31 October 2009 | 3ews3g0hmorphFIXED.pdb.gz (file) | Wayne Decatur | 482 KB | (See Image:3ews3g0hmorph.pdb.gz because I don't feel like entering all the information again since I had to spend time fixing this and don't know if it is done yet.) |
| 04:31, 31 October 2009 | 3ews3g0hmorph.pdb.gz (file) | Wayne Decatur | 482 KB | (morph of 3ews to 3g0h gzipped No copyright since PDB says pdb files and derived files aren't protected.) |
| 17:31, 30 October 2009 | EGC-TnC.jpg (file) | Alicia Daeden | 50 KB | (interaction between EGCg and TnC) |
| 15:59, 30 October 2009 | 2W5N.pdb (file) | Anne-Sophie Kirstetter | 300 KB | (exo-1,5-a-L-arabinanase) |
| 09:10, 28 October 2009 | Acpsal.pdb (file) | Alexander Berchansky | 448 KB | (Alignment of 1f7t on 2hqj) |
| 12:00, 24 October 2009 | New_yellow1.gif (file) | Eric Martz | 116 B | |
| 03:01, 23 October 2009 | 3fpntorotatedversion.pdb (file) | Wayne Decatur | 1.01 MB | (3fpn normal view morphed to view like in Figure 3 of paper describing structure. There is no copyright as PDB says no copyright on PDB files or files derived from them.) |
| 22:34, 18 October 2009 | MPAuthoring01.spt (file) | Eric Martz | 51 B | (Jmol script for Molecular Playground article on Authoring.) |
| 20:24, 18 October 2009 | 2eyqBIOLUNIT.pdb (file) | Wayne Decatur | 751 KB | (Biological Unit of 2eyq. No copyright needed since the PDB says PDB files and those derived do not fall under copyrights.) |
| 10:11, 15 October 2009 | AcpS_Trimer_New.pdb (file) | Alexander Berchansky | 229 KB | (AcpS Trimer according to 3hqj) |
| 07:54, 14 October 2009 | 3gfp.png (file) | OCA | 186 KB | (Source Jena Library http://www.fli-leibniz.de/IMAGE.html) |
| 21:56, 8 October 2009 | Elementbox.JPG (file) | Eleanor Crabb | 3 KB | (Label for Zn in Chain A 1z5a) |
| 20:25, 8 October 2009 | SSU_front_and_LSU_front_side_by_side_white_backgroundSMALL.jpg (file) | Wayne Decatur | 313 KB | (SSU from Ramakrishnan work with A-site Anticodon Stem Loop bound as well as mRNA analaog show. LSU from Steitz and Moore labs work shown. Derived from PDB files available at Protein Data Bank which says they have no copyright if you use derived structur) |
| 20:05, 8 October 2009 | Screen_capture_of_70S_white_background_spacefill_tRNAS.jpg (file) | Wayne Decatur | 1 MB | (screen capture (most anything else causes crash) of 70S ribosome from Pymol. This is the Noller 2.8 Angstrom structure (2j00 and 2j01) with the A-site tRNA from the 5.5 Angstrom (1gix) fit back in with the portion seen at 2.8 Angstrom. According to Prote) |
| 15:09, 7 October 2009 | PKR2_model1.pdb (file) | Anat Levit | 203 KB | |
| 14:25, 7 October 2009 | PKR1_model2.pdb (file) | Anat Levit | 206 KB | |
| 11:29, 7 October 2009 | PKR1_IL_only.pdb (file) | Anat Levit | 51 KB | |
| 07:28, 7 October 2009 | PKR1_model1.pdb (file) | Anat Levit | 206 KB | |
| 18:39, 6 October 2009 | Pdb2aceBIO.pdb (file) | Eran Hodis | 718 KB | (2ace biological unit test) |
| 13:09, 6 October 2009 | FILE_consurf1254065510_pipe.pdb (file) | Anat Levit | 220 KB | (Consurf analysis of PKR1 and PKR2) |
| 05:49, 5 October 2009 | Signal_transduction.jpg (file) | Colin Ridenour | 162 KB | |
| 05:37, 5 October 2009 | Bcl-2_3D.jpg (file) | Colin Ridenour | 15 KB | |
| 00:59, 2 October 2009 | 3dmqBIOLUNIT.pdb (file) | Wayne Decatur | 640 KB | (biological molecule 1 of 3dmq from http://www.pdb.org/pdb/explore/explore.do?structureId=3DMQ From the PDB "Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both ) |
| 07:16, 30 September 2009 | 2kec.jpg (file) | OCA | 22 KB | (Source PDB http://www.rscb.org/pdb) |
| 05:39, 27 September 2009 | 2db3BIOMOL.pdb (file) | Wayne Decatur | 322 KB | (biological molecule 1 of 2db3 from http://www.rcsb.org/pdb/explore/explore.do?structureId=2DB3 From the PDB "Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both) |
| 04:47, 27 September 2009 | 1r9fTRUBIOUNIT.pdb (file) | Wayne Decatur | 238 KB | (biological unit of 1r9f from http://www.rcsb.org/pdb/files/1R9F.pdb1.gz (REMOVED THE MODEL NUMBERS AND SECOND RNA and made second A chain D using a python script (SEE BELOW) From the PDB "Data files contained in the PDB archive (ftp://ftp.wwpdb.org) ar) |
| 04:28, 27 September 2009 | 1r9fTRUEBIOLUNIT.pdb (file) | Wayne Decatur | 239 KB | (biological unit of 1r9f from http://www.rcsb.org/pdb/files/1R9F.pdb1.gz From the PDB "Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and co) |
| 04:12, 27 September 2009 | 1r9f_biolunit.pdb (file) | Wayne Decatur | 301 KB | (biological unit of 1r9f from http://www.rcsb.org/pdb/files/1R9F.pdb1.gz) |
| 11:00, 22 September 2009 | Cartoonprettyjmol.png (file) | Adithya Sagar | 1.9 MB | |
| 11:00, 22 September 2009 | Puttybfactorjmol.png (file) | Adithya Sagar | 1.84 MB | |
| 11:00, 22 September 2009 | Surfssjmol.png (file) | Adithya Sagar | 1.99 MB | |
| 09:05, 22 September 2009 | Surf_sspmol.png (file) | Adithya Sagar | 164 KB | |
| 09:03, 22 September 2009 | B-factorputtypmol.png (file) | Adithya Sagar | 178 KB | |
| 09:02, 22 September 2009 | Pretty_cartoonpmol.png (file) | Adithya Sagar | 177 KB | |
| 14:40, 18 September 2009 | 1GNV-mod.pdb (file) | Tommie Hata | 193 KB | |
| 12:55, 10 September 2009 | Yage.pdb (file) | Alexander Berchansky | 1.37 MB | (2v8z + 2v9d) |
| 06:45, 9 September 2009 | 3gkl.jpg (file) | OCA | 29 KB | (Source PDB http://www.rscb.org/pdb) |
| 05:25, 9 September 2009 | 2wdv.png (file) | OCA | 742 KB | (Source Jena Library http://www.fli-leibniz.de/IMAGE.html) |
| 08:08, 7 September 2009 | Gcd.pdb (file) | Alexander Berchansky | 918 KB | (2v3f + 1ogs + 1y7v) |
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