Ionotropic Glutamate Receptors

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Structure of the ionotropic glutamate receptor tetramer, GluA2, (3kg2)

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This article was developed based on lectures given in Chemistry 543 by Prof. Clarence E. Schutt at Princeton University.

3D structures of glutamate receptor

Updated on 14-July-2019 {{#tree:id=OrganizedByTopic|openlevels=0|

  • GluR domains: ATD 1-393; LBD 394-544; TMD 545-908
  • Ionotropic glutamate receptor 0
    • 2pyy - IGluR2 LBD + Glu – Nostoc punctiforme
  • Ionotropic glutamate receptor 1
    • 3saj - rIGluR1 ATD – rat
    • 5ict – DmIGluR1 LBD (mutant) – Drosophila melanogaster
    • 5dt6 – DmIGluR1 LBD (mutant) + glutamate
    • 4io2 – AvIGluR1 LBD + Glu – Adineta vaga
    • 4io3, 4io4, 4io5, 4io6, 4io7 – AvIGluR1 LBD + amino acid
  • Ionotropic glutamate receptor 2
  • GluR2 positive allosteric modulator complex
  • GluR2 antagonist complex

A topic page describing in detail the GluA2 structure described in 3kg2

  • GluR2 agonist complex
  • GluR2 partial agonist complex
  • GluR2 ligand complex
  • Ionotropic glutamate receptor δ
    • 5kc8 – hIGluRδ2 ATD
    • 5kc9 – IGluRδ1 C-terminal - mouse
    • 5l2e – rIGluRδ2
    • 5cc2 – rIGluRδ2 LBD + agonist
  • Ionotropic glutamate receptor 1+2
    • 6qkz, 6qkc – rIGluR1 + rGluR2 + calcium channel g-8 – Cryo EM
    • 6njl – rIGluR1 + rGluR2 + calcium channel g-8 + auxiliary protein + antibody – Cryo EM
  • Ionotropic glutamate receptor 1+2+3
    • 6njn – rIGluR1 + rGluR2 + rIGluR3 + calcium channel g-8 + auxiliary protein + antibody – Cryo EM
  • Ionotropic glutamate receptor 2+3
    • 5ide, 5idf, 5fwy – rIGluR2 + rGluR3
    • 6njm – rGluR2 + rIGluR3 + calcium channel γ-8 + auxiliary protein + antibody – Cryo EM
  • Ionotropic glutamate receptor 2+4
    • 5fwx – rIGluR2 ATD + rIGluR4 ATD
  • Ionotropic glutamate receptor 3
    • 3o21, 3p3w, 6fpj, 6flr – rIGluR3 ATD
    • 3m3k – rIGluR3 LBD
    • 3rt6, 3rt8, 3dp4 – rIGluR3 LBD + agonist
    • 3m3f – rIGluR3 LBD + allosteric modulator
    • 3dln - rIGluR3 LBD + Glu
    • 4f1y - rIGluR3 LBD + CNQX
    • 4f22, 4f39, 4f3g - rIGluR3 LBD + kainate
    • 4f31 - rIGluR3 LBD (mutant) + kainate
    • 4f29 - rIGluR3 LBD + quisqualate
    • 4f2o, 4f2q - rIGluR3 LBD (mutant) + quisqualate
    • 4f3b - rIGluR3 LBD (mutant) + Glu
  • Ionotropic glutamate receptor 4
    • 3epe, 3fas - rIGluR4 LBD + Glu
    • 3kei – rIGluR4 LBD (mutant) + Glu
    • 3kfm - rIGluR4 LBD (mutant) + partial agonist
    • 3en3 - rIGluR4 LBD + partial agonist
    • 3fat – rIGluR4 LBD + agonist
    • 4gpa – rIGluR4 ATD
  • Ionotropic glutamate receptor 5
  • Ionotropic glutamate receptor 6
  • Ionotropic kainate receptor 1
  • Ionotropic kainate receptor 2
    • 3qxm - hGluK2 LBD + toxin
    • 2xxr – rGluK2 LBD + Glu
    • 4h8i, 5cmm - rGluK2 LBD + Glu derivative
    • 2xxu, 2xxx, 2xxw, 4bdl, 4bdn, 4bdq, 5cmk – rGluK2 LBD (mutant) + Glu
    • 4bdm, 4bdo, 4bdr – rGluK2 LBD (mutant) + kainate
    • 2xxt – rGluK2 LBD + partial agonist
    • 2xxv, 2xxy – rGluK2 LBD (mutant) + partial agonist
    • 3qlt - rGluK2 residues 32-420 (mutant)
    • 1yae, 5kuf - rGluK2 LBD + agonist
    • 5kuh - rGluK2 LBD (mutant) + agonist
    • 4uqq - rGluK2 ATD,LBD,TMD (mutant) + agonist
  • Ionotropic kainate receptor 3
  • Ionotropic kainate receptor 4
    • 5ikb – rGluK4 LBD + kainate
  • Ionotropic kainate receptor 5
    • 3om0, 3om1 – rGluK5 ATD
    • 3qlu - rGluK5 + rGluK2 (mutant)
    • 3qlv - rGluK5 + rGluK2
  • NMDA receptor (NMDAR)
  • NMDAR subunit NR1
    • 2nr1 – hNMDAR TMD - NMR
    • 4kcc – rNMDAR LBD
    • 3q41 – rNMDAR N ATD
    • 1y1m, 1y1z, 1y20 – NMDAR LBD (mutant) + partial agonist
    • 2hqw – NMDAR C terminal + calmodulin
    • 1pb7 – rNMDAR LBD + glycine
    • 1pb8, 1pb9 – rNMDAR LBD + serine
    • 1pbq – rNMDAR LBD + DCKA
    • 4kfq – rNMDAR LBD + antagonist
    • 5fxk, 5fxi, 5fxh, 5fxg – rNMDAR (mutant) – Cryo EM
    • 3qek – XlNMDA R ATD (mutant) – Xenopus laevis
  • NMDAR subunit NR2A
    • 2a5s - rNMDAR LBD + glutamate
    • 4jwx – rNMDAR LBD + agonist
  • NMDAR subunit NR2B
    • 3jpy, 3jpw - rNMDAR ATD (mutant)
    • 5up2, 5uow - XlNMDAR + NR2A + Fab + glutamate – Cryo-EM
    • 5un1 - XlNMDAR + methyl-aspartate receptor + glutamate
  • NMDAR subunit NR3A
    • 4kcd – rNMDAR LBD
    • 2rc8 - rNMDAR LBD + serine
    • 2rc7, 2rca - rNMDAR LBD + glycine
    • 2rc9 - rNMDAR LBD + ACPC
  • NMDAR subunit NR3B
    • 2rcb - rNMDAR LBD + serine
  • NMDAR subunit NR2D
    • 4jwy – rNMDAR LBD + agonist
    • 3oek, 3oem – rNMDAR LBD + aspartate
    • 3oel, 3oen – rNMDAR LBD + glutamate
  • NMDAR subunit NR1+NR2A
  • NMDAR subunit NR1+NR2A complex
  • NMDAR subunit NR1+NR2B
  • NMDAR subunit NR1+NR2A+NR2B
    • 5up2, 5uow – XlNMDAR + antibody – Cryo EM

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Topic Page on Glutamate Receptor GluA2 structure

There is a topic page describing in detail the GluA2 structure described in 3kg2. The page is meant to complement the original publication of the structure by Sobolevsky et al.[2][9] with matching colors, etc..

See Also

References

  1. 1.0 1.1 1.2 Jin R, Clark S, Weeks AM, Dudman JT, Gouaux E, Partin KM. Mechanism of positive allosteric modulators acting on AMPA receptors. J Neurosci. 2005 Sep 28;25(39):9027-36. PMID:16192394 doi:25/39/9027
  2. 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 Sobolevsky AI, Rosconi MP, Gouaux E. X-ray structure, symmetry and mechanism of an AMPA-subtype glutamate receptor. Nature. 2009 Dec 10;462(7274):745-56. Epub . PMID:19946266 doi:10.1038/nature08624
  3. 3.0 3.1 3.2 3.3 Purcell AE, Jeon OH, Zimmerman AW, Blue ME, Pevsner J. Postmortem brain abnormalities of the glutamate neurotransmitter system in autism. Neurology. 2001 Nov 13;57(9):1618-28. PMID:11706102
  4. Welsh JP, Ahn ES, Placantonakis DG. Is autism due to brain desynchronization? Int J Dev Neurosci. 2005 Apr-May;23(2-3):253-63. PMID:15749250 doi:10.1016/j.ijdevneu.2004.09.002
  5. Zuo J, De Jager PL, Takahashi KA, Jiang W, Linden DJ, Heintz N. Neurodegeneration in Lurcher mice caused by mutation in delta2 glutamate receptor gene. Nature. 1997 Aug 21;388(6644):769-73. PMID:9285588 doi:10.1038/42009
  6. Rubenstein JL, Merzenich MM. Model of autism: increased ratio of excitation/inhibition in key neural systems. Genes Brain Behav. 2003 Oct;2(5):255-67. PMID:14606691
  7. Jin R, Singh SK, Gu S, Furukawa H, Sobolevsky AI, Zhou J, Jin Y, Gouaux E. Crystal structure and association behaviour of the GluR2 amino-terminal domain. EMBO J. 2009 Jun 17;28(12):1812-23. Epub 2009 May 21. PMID:19461580 doi:10.1038/emboj.2009.140
  8. HERRMANN GR, HEJTMANCIK MR, GRAHAM RN, MARBURGER RC. A new superior oral diuretic drug, chlorothiazide (diuril); clinical evaluation. Tex State J Med. 1958 Sep;54(9):639-45. PMID:13580922
  9. Wollmuth LP, Traynelis SF. Neuroscience: Excitatory view of a receptor. Nature. 2009 Dec 10;462(7274):729-31. PMID:20010675 doi:10.1038/462729a
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