Ionotropic Glutamate Receptors
From Proteopedia
| |||||||||||
Page Development
This article was developed based on lectures given in Chemistry 543 by Prof. Clarence E. Schutt at Princeton University.
3D structures of glutamate receptor
Updated on 14-July-2019 {{#tree:id=OrganizedByTopic|openlevels=0|
- GluR domains: ATD 1-393; LBD 394-544; TMD 545-908
- Ionotropic glutamate receptor 0
- 2pyy - IGluR2 LBD + Glu – Nostoc punctiforme
- Ionotropic glutamate receptor 1
- Ionotropic glutamate receptor 2
- 2wjw, 2wjx – hIGluR2 ATD - human
- 3rn8, 3rnn – hIGluR2 LBD + potentiator
- 5ybg, 5ybf - hIGluR2 LBD + potentiator + Glu
- 4u1y, 4u2p, 5l1b - rIGluR2
- 5vov, [[5vou, 5vot - rIGluR2 + calcium channel γ-2 – Cryo EM
- 3n6v, 3o2j, 5n6p - rIGluR2 ATD (mutant) – rat
- 3hsy, 3h5v, 3h5w - rIGluR2 ATD
- 3bki, 5l1e, 5l1f 5l1e, 5l1f, 5l1g, 5l1h - rIGluR2 LBD + inhibitor
- 1fto, 4h8j - rIGluR2 LBD
- 3t93, 4u2r - rIGluR2 LBD (mutant)
- 5fth, 5fti, 5ns9 - rIGluR2 LBD (mutant) + Glu
- 5kk2, 5vov, 5vou, 5vot - rIGluR2 + calcium channel γ2 subunit – Cryo-EM
- 2wjw, 2wjx – hIGluR2 ATD - human
- GluR2 positive allosteric modulator complex
- 2xhd, 5h8s - hIGluR2 LBD + positive allosteric modulator + Glu
- 3pmv, 3pmw, 3pmx, 3o28, 3o29, 3o2a, 3o6g, 3o6h, 3o6i, 3m3l, 3lsl, 3tdj - rIGluR2 LBD + positive allosteric modulator + Glu
- 2al4, 1p1o - rIGluR2 LBD (mutant) + positive allosteric modulator
- 3ijo, 3ijx, 3il1, 3ilt, 3ilu, 3lsl, 3tdj, 5oew, 6hch, 6hcc, 6hcb, 6hc9, 6faz - rIGluR2 + positive allosteric modulator + Glu
- 2xx8, 2xx7, 2xx9, 2xxh, 2xxi, 3lsf, 3h6t, 3h6u, 3h6v, 3h6w, 3bbr, 3tkd, 4fat, 4iy5, 4iy6, 4lz5, 4lz7, 4lz8, 4n07, 5o9a - rIGluR2 LBD (mutant) + positive allosteric modulator + Glu
- 1mm6, 1mm7, 6hca - rIGluR2 LBD + positive allosteric modulator
- 3ik6 - rIGluR2 + Duiril + Glu
- 2xhd, 5h8s - hIGluR2 LBD + positive allosteric modulator + Glu
- GluR2 antagonist complex
A topic page describing in detail the GluA2 structure described in 3kg2
- GluR2 agonist complex
- 3rtf, 3rtw, 3pd8, 3pd9, 3bft, 3bfu, 1wvj, 1syh, 1syi, 1ms7, 1mqd, 1nnp, 1nnk, 1m5b, 1m5c, 1m5d, 1m5e, 1m5f, 1ftm, 4g8m, 4igt, 5vhw, 5vhx, 5vhy, 5vhz, 5fho, 5fhn, 5fhm, 4x48, 4q30, 5nih, 5ng9, 6q60, 6q54 - rIGluR2 LBD + agonist
- 3b6t, 2al5, 2anj, 1p1q, 1p1u, 1p1w, 1lb8 - rIGluR2 LBD (mutant) + agonist
- 1lbc, 5elv - rIGluR2 LBD (mutant) + agonist + Glu
- 2p2a, 5buu, 6hch, 6hcc, 6hcb - rIGluR2 LBD + agonist + Glu
- 3rtf, 3rtw, 3pd8, 3pd9, 3bft, 3bfu, 1wvj, 1syh, 1syi, 1ms7, 1mqd, 1nnp, 1nnk, 1m5b, 1m5c, 1m5d, 1m5e, 1m5f, 1ftm, 4g8m, 4igt, 5vhw, 5vhx, 5vhy, 5vhz, 5fho, 5fhn, 5fhm, 4x48, 4q30, 5nih, 5ng9, 6q60, 6q54 - rIGluR2 LBD + agonist
- GluR2 partial agonist complex
- 5zg2 - hIGluR2 + partial agonist
- 5zg3, 5zg1, 5zg0, 5ybg, 5ybf - hIGluR2 + partial agonist + Glu
- 4u4f - rIGluR2 + partial agonist
- 1y1m, 2aix, 1y1z, 1y20, 1mqg, 1mqh, 1mqi, 1mqj, 1mxu, 1mxv, 1mxw, 1mxx, 1mxy, 1mxz, 1my0, 1my1, 1my2, 1my3, 1my4, 1fw0, 1ftk, 1gr2 - rIGluR2 LBD + partial agonist
- 1xhy, 1p1n, 1lbb, 3t96, 3t9h, 3t9u, 3t9v, 5jei - rIGluR2 LBD (mutant) + partial agonist
- 4u2q - rIGluR2 + partial agonist
- 4u5b, 4u5c, 4u5d, 4u5e, 4u5f - rIGluR2 + partial agonist + snail toxin + modulator
- 4gxs, 4u1o, 4u1w, 4u1x, 4u1z - rIGluR2 LBD + kainate derivative
- 5zg2 - hIGluR2 + partial agonist
- GluR2 ligand complex
- 3dp6, 2uxa, 2i3v, 2i3w, 1ftj, 4z0i, 4o3b, 6gl4 - rIGluR2 LBD + Glu
- 3b6q, 3b6w, 2gfe, 3t9x, 4u4s, 4u4x, 4yu0, 6giv - rIGluR2 LBD (mutant) + Glu
- 4o3a, 4o3c - rIGluR2 LBD + Asp
- 4u1o, 4u1w, 4u1x, 4u1z - rIGluR2 LBD + kainate derivative
- 4uqk, 4uqj, 4uq6 - rIGluR2 + quisqualate – Cryo EM
- 4wxj - DmIGluR2 LBD + Glu
- 3dp6, 2uxa, 2i3v, 2i3w, 1ftj, 4z0i, 4o3b, 6gl4 - rIGluR2 LBD + Glu
- Ionotropic glutamate receptor δ
- Ionotropic glutamate receptor 1+2
- Ionotropic glutamate receptor 1+2+3
- 6njn – rIGluR1 + rGluR2 + rIGluR3 + calcium channel g-8 + auxiliary protein + antibody – Cryo EM
- 6njn – rIGluR1 + rGluR2 + rIGluR3 + calcium channel g-8 + auxiliary protein + antibody – Cryo EM
- Ionotropic glutamate receptor 2+3
- Ionotropic glutamate receptor 2+4
- 5fwx – rIGluR2 ATD + rIGluR4 ATD
- 5fwx – rIGluR2 ATD + rIGluR4 ATD
- Ionotropic glutamate receptor 3
- 3o21, 3p3w, 6fpj, 6flr – rIGluR3 ATD
- 3m3k – rIGluR3 LBD
- 3rt6, 3rt8, 3dp4 – rIGluR3 LBD + agonist
- 3m3f – rIGluR3 LBD + allosteric modulator
- 3dln - rIGluR3 LBD + Glu
- 4f1y - rIGluR3 LBD + CNQX
- 4f22, 4f39, 4f3g - rIGluR3 LBD + kainate
- 4f31 - rIGluR3 LBD (mutant) + kainate
- 4f29 - rIGluR3 LBD + quisqualate
- 4f2o, 4f2q - rIGluR3 LBD (mutant) + quisqualate
- 4f3b - rIGluR3 LBD (mutant) + Glu
- 3o21, 3p3w, 6fpj, 6flr – rIGluR3 ATD
- Ionotropic glutamate receptor 4
- Ionotropic glutamate receptor 5
- 3fuz, 2zns – hIGluR5 LBD + Glu
- 3fv1, 3fv2, 3fvg, 3fvk, 3fvn, 3fvo, 2znt, 2znu - hIGluR5 LBD + agonist
- 1txf - rIGluR5 LBD + Glu
- 2ojt - rIGluR5 + anion
- 3c31, 3c32, 3c33, 3c34, 3c35, 3c36 - rIGluR5 LBD + ion
- 2wky, 3gba, 3gbb, 2pbw, 2f34, 2f35, 2f36 – rIGluR5 LBD + agonist
- 2qs1, 2qs2, 2qs3, 2qs4 - rIGluR5 LBD (mutant) + agonist
- 1vso - rIGluR5 LBD + antagonist
- 3fuz, 2zns – hIGluR5 LBD + Glu
- Ionotropic glutamate receptor 6
- Metabotropic glutamate receptor see Metabotropic glutamate receptor
- Ionotropic kainate receptor 1
- Ionotropic kainate receptor 2
- 3qxm - hGluK2 LBD + toxin
- 2xxr – rGluK2 LBD + Glu
- 4h8i, 5cmm - rGluK2 LBD + Glu derivative
- 2xxu, 2xxx, 2xxw, 4bdl, 4bdn, 4bdq, 5cmk – rGluK2 LBD (mutant) + Glu
- 4bdm, 4bdo, 4bdr – rGluK2 LBD (mutant) + kainate
- 2xxt – rGluK2 LBD + partial agonist
- 2xxv, 2xxy – rGluK2 LBD (mutant) + partial agonist
- 3qlt - rGluK2 residues 32-420 (mutant)
- 1yae, 5kuf - rGluK2 LBD + agonist
- 5kuh - rGluK2 LBD (mutant) + agonist
- 4uqq - rGluK2 ATD,LBD,TMD (mutant) + agonist
- 3qxm - hGluK2 LBD + toxin
- Ionotropic kainate receptor 3
- Ionotropic kainate receptor 4
- 5ikb – rGluK4 LBD + kainate
- 5ikb – rGluK4 LBD + kainate
- Ionotropic kainate receptor 5
- NMDA receptor (NMDAR)
- NMDAR subunit NR1
- 2nr1 – hNMDAR TMD - NMR
- 4kcc – rNMDAR LBD
- 3q41 – rNMDAR N ATD
- 1y1m, 1y1z, 1y20 – NMDAR LBD (mutant) + partial agonist
- 2hqw – NMDAR C terminal + calmodulin
- 1pb7 – rNMDAR LBD + glycine
- 1pb8, 1pb9 – rNMDAR LBD + serine
- 1pbq – rNMDAR LBD + DCKA
- 4kfq – rNMDAR LBD + antagonist
- 5fxk, 5fxi, 5fxh, 5fxg – rNMDAR (mutant) – Cryo EM
- 3qek – XlNMDA R ATD (mutant) – Xenopus laevis
- 2nr1 – hNMDAR TMD - NMR
- NMDAR subunit NR2A
- NMDAR subunit NR2B
- NMDAR subunit NR3A
- NMDAR subunit NR3B
- 2rcb - rNMDAR LBD + serine
- 2rcb - rNMDAR LBD + serine
- NMDAR subunit NR2D
- NMDAR subunit NR1+NR2A
- NMDAR subunit NR1+NR2A complex
- 5tpa, 5tp9 – hNMDAR LBD + antagonist
- 5kdt, 5kcj – hNMDAR LBD + modulator
- 5tpa, 5tp9, 5kdt, 5kcj, 5i2n, 5i2k, 5h8q, 5h8n, 5h8h – hNMDAR LBD + allosteric modulator
- 5vij, 5vii, 5vih, 5dex, 5u8c – rNMDAR LBD + antagonist
- 5vij, 5vii, 5vih, 5u8c – rNMDAR LBD+TMD + antagonist
- 5jty, 5fxj – rNMDAR + agonist
- 5tq0, 5tq2 – rNMDAR LBD + antibody
- 5i59, 5i58, 5i57, 5i56 – rNMDAR LBD + allosteric modulator
- 5tq2, 5tq0, 5tpw – XlNMDAR1 ATD (mutant) + rNMDAR2A LBD + antibody
- 5tpw – XlNMDAR1 LBD (mutant) + rNMDAR2A LBD + antibody
- 5ewm, 5ewl – XlNMDAR1 ATD (mutant) + rNMDAR2A ATD (mutant) + antagonist
- 5tpa, 5tp9 – hNMDAR LBD + antagonist
- NMDAR subunit NR1+NR2B
- 6cna – rNMDAR ATD+LBD+TMD – Cryo EM
- 5tpz – rNMDAR LBD
- 4pe5, 4tll, 4tlm – rNMDAR (mutants)
- 5b3j – XlNMDAR1 ATD (mutant) + rNMDAR2B ATD (mutant) + antibody
- 5un1 – XlNMDAR LBD+TMD
- 5ipv, 5ipt, 5ips, 5ipr, 5ipq, 5iov, 5iou – rNMDAR2B (mutant) + NMDAR1 + inhibitor
- 5ipu, 6e7x, 6e7w, 6e7v, 6e7u, 6e7t, 6e7s, 6e7r – XlNMDAR2B (mutant) + NMDAR1 (mutant) + inhibitor
- 3qel, 3qem, 5ewj – XlNMDAR ATD (mutant) + ifenprodil
- 6cna – rNMDAR ATD+LBD+TMD – Cryo EM
- NMDAR subunit NR1+NR2A+NR2B
}}
Topic Page on Glutamate Receptor GluA2 structure
There is a topic page describing in detail the GluA2 structure described in 3kg2. The page is meant to complement the original publication of the structure by Sobolevsky et al.[2][9] with matching colors, etc..
See Also
- Glutamate Receptor Symmetry Analysis
- Glutamate receptor (GluA2) structure in detail
- Metabotropic glutamate receptor
- Membrane Channels & Pumps
- Alzheimer's Disease
References
- ↑ 1.0 1.1 1.2 Jin R, Clark S, Weeks AM, Dudman JT, Gouaux E, Partin KM. Mechanism of positive allosteric modulators acting on AMPA receptors. J Neurosci. 2005 Sep 28;25(39):9027-36. PMID:16192394 doi:25/39/9027
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 Sobolevsky AI, Rosconi MP, Gouaux E. X-ray structure, symmetry and mechanism of an AMPA-subtype glutamate receptor. Nature. 2009 Dec 10;462(7274):745-56. Epub . PMID:19946266 doi:10.1038/nature08624
- ↑ 3.0 3.1 3.2 3.3 Purcell AE, Jeon OH, Zimmerman AW, Blue ME, Pevsner J. Postmortem brain abnormalities of the glutamate neurotransmitter system in autism. Neurology. 2001 Nov 13;57(9):1618-28. PMID:11706102
- ↑ Welsh JP, Ahn ES, Placantonakis DG. Is autism due to brain desynchronization? Int J Dev Neurosci. 2005 Apr-May;23(2-3):253-63. PMID:15749250 doi:10.1016/j.ijdevneu.2004.09.002
- ↑ Zuo J, De Jager PL, Takahashi KA, Jiang W, Linden DJ, Heintz N. Neurodegeneration in Lurcher mice caused by mutation in delta2 glutamate receptor gene. Nature. 1997 Aug 21;388(6644):769-73. PMID:9285588 doi:10.1038/42009
- ↑ Rubenstein JL, Merzenich MM. Model of autism: increased ratio of excitation/inhibition in key neural systems. Genes Brain Behav. 2003 Oct;2(5):255-67. PMID:14606691
- ↑ Jin R, Singh SK, Gu S, Furukawa H, Sobolevsky AI, Zhou J, Jin Y, Gouaux E. Crystal structure and association behaviour of the GluR2 amino-terminal domain. EMBO J. 2009 Jun 17;28(12):1812-23. Epub 2009 May 21. PMID:19461580 doi:10.1038/emboj.2009.140
- ↑ HERRMANN GR, HEJTMANCIK MR, GRAHAM RN, MARBURGER RC. A new superior oral diuretic drug, chlorothiazide (diuril); clinical evaluation. Tex State J Med. 1958 Sep;54(9):639-45. PMID:13580922
- ↑ Wollmuth LP, Traynelis SF. Neuroscience: Excitatory view of a receptor. Nature. 2009 Dec 10;462(7274):729-31. PMID:20010675 doi:10.1038/462729a
Proteopedia Page Contributors and Editors (what is this?)
Michal Harel, David Canner, Wayne Decatur, Alexander Berchansky, Joel L. Sussman

