Acetylcholinesterase
From Proteopedia
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| Acetylcholinesterase (1ea5) | |||||||||
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| Activity: | Acetylcholinesterase, with EC number 3.1.1.7 | ||||||||
| Related: | 1amn, 1ax9, 1cfj, 1dx6, 1e3q, 1e66, 1eea, 1eve, 1fss, 1oce, 1qid, 1qie, 1qif, 1qig, 1qih, 1qii, 1qij, 1qik, 1qim, 1qti, 1som, 1vot, 1vxo, 1vxr, 2ace, 2ack, 2dfp, 3ace | ||||||||
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| Resources: | FirstGlance, OCA, RCSB, PDBsum | ||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||
Acetylcholinesterase (AChE) is key enzyme in the nervous system of animals. By rapid hydrolysis of the neurotransmitter, acetylcholine (ACh), AChE terminates neurotransmission at cholinergic synapses. It is a very fast enzyme, especially for a serine hydrolase, functioning at a rate approaching that of a diffusion-controlled reaction. AChE inhibitors are among the key drugs approved by the FDA for management of Alzheimer's disease (AD). The powerful toxicity of organophosphorus (OP) poisons is attributed primarily to their potent AChE inhibitors.  For more details see
- AChE bivalent inhibitors 
 
- Torpedo californica acetylcholinesterase with bifunctional inhibitor
 
- Acetylcholinesterase: Substrate Traffic and Inhibition
 
- Acetylcholinesterase Inhibitor Pharmacokinetics
 
- Acetylcholinesterase inhibitors
 
- AChE inhibitors and substrates 
 
- Human Acetylcholinesterase
 
- Acetylcholinesterase inhibited by nerve agent soman
 
- Acetylcholinesterase with DFP
 
- Acetylcholinesterase with OTMA
 
- Acetylcholinesterase with acetylcholine
 
- Complex of TcAChE with an iminium galanthamine derivative
 
- Complex of TcAChE with bis-acting galanthamine derivative
 
- Cholinesterase
 
- Huperzine A Complexed with Acetylcholinesterase
 
- Torpedo Californica Acetylcholinesterase in complex with an (R)-Tacrine-(10)-Hupyridone inhibitor
 
- Torpedo Californica Acetylcholinesterase in complex with an (S)-Tacrine-(10)-Hupyridone inhibitor
 
- Torpedo californica acetylcholinesterase with alkylene-linked tacrine dimer (5 carbon linker)
 
- Torpedo californica acetylcholinesterase with alkylene-linked tacrine dimer (7 carbon linker)
 
- Tetramerization domain of acetylcholinesterase
See also a model of African Malaria Mosquito Acetylcholinesterase.
Key Enzyme in the Nervous System
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Solution of the three-dimensional (3D) structure of Torpedo californica acetylcholinesterase (TcAChE) in 1991 opened up new horizons in research on an enzyme that had already been the subject of intensive investigation.[1] The unanticipated structure of this extremely rapid enzyme, in which the active site was found to be buried at the bottom of a , lined by (colored dark magenta), led to a revision of the views then held concerning substrate traffic, recognition and hydrolysis.[2] To understand how those aromatic residues behave with the enzyme, see Flexibility of aromatic residues in acetylcholinesterase. Solution of the 3D structure of acetylcholinesterase led to a series of theoretical and experimental studies, which took advantage of recent advances in theoretical techniques for treatment of proteins, such as molecular dynamics and electrostatics and to site-directed mutagenesis, utilizing suitable expression systems. Acetylcholinesterase hydrolysizes the neurotransmitter acetylcholine , producing group. ACh directly binds (via its nucleophilic Oγ atom) within the (ACh/TcAChE structure 2ace). The residues are also important in the ligand recognition [3]. After this binding acetylcholinesterase ACh. See also: AChE inhibitors and substrates
Treatment of Alzheimer's disease
Alzheimer's disease (AD) is a disorder that attacks the central nervous system through progressive degeneration of its neurons. AD occurs in around 10% of the elderly and, as yet, there is no known cure. Patients with this disease develop dementia which becomes more severe as the disease progresses. It was suggested that symptoms of AD are caused by decrease of activity of cholinergic neocortical and hippocampal neurons. Treatment of AD by ACh precursors and cholinergic agonists was ineffective or caused severe side effects. ACh hydrolysis by AChE causes termination of cholinergic neurotransmission. Therefore, compounds which inhibit AChE might significantly increase the levels of ACh depleted in AD. Indeed, it was shown that AChE inhibitors improve the cognitive abilities of AD patients at early stages of the disease development.
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Organophosphorus acid anhydride nerve agents
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Organophosphorus (OP) acid anhydride nerve agents are potent inhibitors which rapidly phosphonylate AChE and then may undergo an internal dealkylation reaction (called "aging") to produce an OP-enzyme conjugate that cannot be reactivated. As was mentioned above, AChE hydrolysizes the neurotransmitter , producing group. directly binds catalytic (via its nucleophilic Oγ atom). , O-(1,2,2-trimethylpropyl) methylphosphonofluoridate (fluorine atom is colored violet and phosphorus atom is colored darkmagenta), is one of the most toxic OPs. Soman inhibits AChE by to catalytic Ser200, . This process implicates nucleophilic attack of the Ser200 nucleophilic Oγ atom on the phosphorus atom of soman, with concomitant departure of its fluoride atom. After that AChE catalyzes the ("aging") of the soman or other OP. This causes irreversible inhibition of AChE, "aged" soman/AChE conjugate can not be reactivated. However, before “aging”, at the step of , AChE can be by nucleophiles, such as pralidoxime (2-PAM), resulting in of the phosphonyl adduct from Ser200 Oγ. At the (2wfz) the catalytic His440 forms hydrogen bonds with Ser200 Oγ and Glu327 Oε1 via its Nε2 and Nδ1 nitrogens, respectively. The O2 atom of soman is within hydrogen bonding distance of His440 Nε2. Soman O1 mimicks carbonyl oxygen of ACh. A water molecule 1001 interacting with soman O2 is represented as a red ball. The active site residues of the nonaged soman/TcAChE are colored yellow. The O2 atom of the (2wg0) forms a salt bridge with His440 Nε2. The active site residues of the aged soman/TcAChE are colored pink. of the structures of the nonaged (2wfz) and aged (2wg0) conjugates reveals a small, but important, change within the active site - the imidazole ring of His440 is tilted back to a native-like conformation after dealkylation. The water molecule 1001, which interacts with soman O2 in the nonaged crystal structure, is not within hydrogen bonding distance of O2 in the aged crystal structure. 2-PAM binds poorly to the nonaged phosphonylated enzyme (its electron density was not found) and binds in an after soman aging to TcAChE (2wg1) [12].
3D Structures of AChE
Update May 2012
Acetylcholinesterase - AChE native
3lii – hAChE - recombinant human 
1ea5, 2ace – TcAChE – trigonal – Torpedo californica 
2j3d – TcAChE – monoclinic 
1w75 – TcAChE – orthorhombic 
2vt6, 2vt7 – TcAChE – different dosage 
1qid to 1qim  - TcAChE synchrotron radiation damage 
1j06, 1maa – mAChE - mouse 
1qo9 – DmAChE - Drosophila 
1eea, 1c2b – electrophorus AChE – Electric eel - Orthorhombic 
1c2o – electrophorus AChE – Electric eel - Monoclinic 
AChE inhibitors (In Different Languages)
1eve AChE-Aricept complex, 1eve (Arabic), 1eve (Chinese), 1eve (Italian), 1eve (Russian), 1eve (Spanish), 1eve (Turkish) 
1vot AChE-Huperzine A complex, 1vot (Chinese) 
AChE active site inhibitors conjugating at the bottom of the active site gorge
2w9i – TcAChE + methylene blue 
 
2wls – MosAChE + AMTS13  
2vq6 – TcAChE + 2-PAM  
2j3q – TcAChE + Thioflavin T  
2ha0 – mAChE + ketoamyltrimethylammonium 
 
2h9y – mAChE + TMTFA 
1gpk, 1gpn, 1vot – TcAChE + huperzine 
 
1gqr – TcAChE + rivastigmine  
1gqs – TcAChE + NAP  
1e66 – TcAChE + huprine  
4a16 – mAChE + huprine  
1dx4, 1qon – DmAChE + tacrine derivative  
1oce – TcAChE + MF268  
1ax9, 1ack – TcAChE + edrophonium  
  
1amn – TcAChE + TMTFA  
1acj – TcAChE + tacrine  
1u65 – TcAChE + CPT-11
2bag - TcAChE + ganstigmine
2xi4 - TcAChE + aflatoxin
AChE peripheral site inhibitors conjugating at the surface of the protein
1ku6, 1mah - mAChE + fasciculin 2  
 
1j07 - mAChE + decidium   
1n5m - mAChE + gallamine   
1n5r - mAChE + propidium  
1b41, 1f8u - hAChE + fasciculin 2  
 
1fss - TcAChE + fasciculin 2   
2x8b - hAChE + fasciculin 2 + tabun
AChE bis inhibitors spanning the active site gorge
3i6m – TcAChE + N-piperidinopropyl galanthamine  
 
3i6z - TcAChE + saccharinohexyl galanthamine    
1zgb, 1zgc – TcAChE + tacrine (10) hupyridone   
2w6c – TcAChE + bis-(-)-nor-meptazinol   
2ckm, 2cmf – TcAChE + bis-tacrine  
2cek – TcAChE + N-[8-(1,2,3,4-tetrahydroacridin-9-ylthio)octyl]-1,2,3,4-tetrahydroacridin-9-amine   
1ut6 - TcAChE + N-9-(1,2,3,4-tetrahydroacridinyl)-1,8-diaminooctane   
1odc - TcAChE + N-4-quinolyl-N-9-(1,2,3,4-tetrahydroacridinyl)-1,8-diaminooctane   
1w4l, 1w6r, 1w76, 1dx6, 1qti - TcAChE + galanthamine and derivative   
1q83, 1q84 - mAChE + TZ2PA6   
1h22, 1h23 – TcAChE + bis-hupyridone   
1hbj – TcAChE + quinoline derivativev  
1e3q – TcAChE + bw284c51  
1eve – TcAChE + e2020  
1acl – TcAChE + decamethonium  
 
AChE organophosphate inhibitors causing irreversible inhibition
2wu3 – mAChE + fenamiphos and HI-6 
2wu4 – mAChE + fenamiphos and ortho-7 
2jgf - mAChE + fenamiphos  
2wfz, 2wg0, 2wg2, 1som - TcAChE + soman 
2wg1 - TcAChE + soman + 2-PAM 
2whp, 2whq, 2whr – mAChE + sarin and HI-6 
2jgg - mAChE + sarin 
2jgl - mAChE + VX and sarin 
1cfj - TcAChE + sarin, GB 
3dl4, 3dl7 – mAChE + tabun 
2jey – mAChE + HLO-7 
 
2c0p, 2c0q - mAChE + tabun  
2jez - mAChE + tabun + HLO-7 
2jf0 - mAChE + tabun + Ortho-7 
2jgh - mAChE + VX 
1vxo, 1vxr - TcAChE + VX  
2jgi, 2jgm - mAChE + DFP 
1dfp - TcAChE + DFP 
2jgj, 2jgk, 2jge - mAChE + methamidophos 
 
2gyu - mAChE + HI-6 
2gyv - mAChE + Ortho-7 
2gyw - mAChE + obidoxime 
3gel - TcAChE + methyl paraoxon
AChE substrate analogues mimicking the binding of the substrate acetylcholine
2ha4 – mAChE (mutant) + acetylcholine 
2vja, 2vjb, 2vjc, 2vjd, 2cf5 – TcAChE + 4-oxo-N,N,N-trimethylpentanaminium 
2v96, 2v97, 2v98, 2v99 – TcAChE + 1-(2-nitrophenyl)-2,2,2-trifluoroethyl-arsenocholine  
2ha2 – mAChE + succinylcholine 
2ha3 - mAChE + choline 
2ha5 – mAChE (mutant) + acetylthiocholine 
2ha6 – mAChE (mutant) + succinylthiocholine 
2ha7 – mAChE (mutant) + butyrylthiocholine 
2ch4, 2c58 – TcAChE  + acetylthiocholine 
2c5g – TcAChE  + thiocholine 
2va9 - TcAChE + ‘caged’ arsenocholine
Others...
2j4f – TcAChE + Hg 
1vzj – TcAChE tetramerization domain 
1jjb – TcAChE + PEG 
1qie, 1qif, 1qig, 1qih, 1qii, 1qij, 1qik – TcAChE synchrotron radiation damage 
3m3d – TcAChE + Xe
Additional Resources
For additional information, see:
 
Alzheimer's Disease
AChE inhibitors and substrates
AChE inhibitors and substrates (Part II) 
AChE inhibitors and substrates (Part III) 
AChE bivalent inhibitors 
AChE bivalent inhibitors (Part II)
External Links
- Acetylcholinesterase Tutorial by Karl Oberholser, Messiah College
- PDB Molecule of the Month - Acetylcholinesterase
- Movies: X-ray Damage in ACh & Nature's Vacuum Cleaner by R. Gillilan, Cornell Univ
References
- ↑ Sussman JL, Harel M, Frolow F, Oefner C, Goldman A, Toker L, Silman I. Atomic structure of acetylcholinesterase from Torpedo californica: a prototypic acetylcholine-binding protein. Science. 1991 Aug 23;253(5022):872-9. PMID:1678899
- ↑ Botti SA, Felder CE, Lifson S, Sussman JL, Silman I. A modular treatment of molecular traffic through the active site of cholinesterase. Biophys J. 1999 Nov;77(5):2430-50. PMID:10545346
- ↑ 3.0 3.1 Raves ML, Harel M, Pang YP, Silman I, Kozikowski AP, Sussman JL. Structure of acetylcholinesterase complexed with the nootropic alkaloid, (-)-huperzine A. Nat Struct Biol. 1997 Jan;4(1):57-63. PMID:8989325
- ↑ Greenblatt HM, Kryger G, Lewis T, Silman I, Sussman JL. Structure of acetylcholinesterase complexed with (-)-galanthamine at 2.3 A resolution. FEBS Lett. 1999 Dec 17;463(3):321-6. PMID:10606746
- ↑ Harel M, Schalk I, Ehret-Sabatier L, Bouet F, Goeldner M, Hirth C, Axelsen PH, Silman I, Sussman JL. Quaternary ligand binding to aromatic residues in the active-site gorge of acetylcholinesterase. Proc Natl Acad Sci U S A. 1993 Oct 1;90(19):9031-5. PMID:8415649
- ↑ Bar-On P, Millard CB, Harel M, Dvir H, Enz A, Sussman JL, Silman I. Kinetic and structural studies on the interaction of cholinesterases with the anti-Alzheimer drug rivastigmine. Biochemistry. 2002 Mar 19;41(11):3555-64. PMID:11888271
- ↑ Haviv H, Wong DM, Greenblatt HM, Carlier PR, Pang YP, Silman I, Sussman JL. Crystal packing mediates enantioselective ligand recognition at the peripheral site of acetylcholinesterase. J Am Chem Soc. 2005 Aug 10;127(31):11029-36. PMID:16076210 doi:http://dx.doi.org/10.1021/ja051765f
- ↑ Ravelli RB, Raves ML, Ren Z, Bourgeois D, Roth M, Kroon J, Silman I, Sussman JL. Static Laue diffraction studies on acetylcholinesterase. Acta Crystallogr D Biol Crystallogr. 1998 Nov 1;54(Pt 6 Pt 2):1359-66. PMID:10089512
- ↑ Harel M, Sonoda LK, Silman I, Sussman JL, Rosenberry TL. Crystal structure of thioflavin T bound to the peripheral site of Torpedo californica acetylcholinesterase reveals how thioflavin T acts as a sensitive fluorescent reporter of ligand binding to the acylation site. J Am Chem Soc. 2008 Jun 25;130(25):7856-61. Epub 2008 May 31. PMID:18512913 doi:http://dx.doi.org/10.1021/ja7109822
- ↑ Greenblatt HM, Guillou C, Guenard D, Argaman A, Botti S, Badet B, Thal C, Silman I, Sussman JL. The complex of a bivalent derivative of galanthamine with torpedo acetylcholinesterase displays drastic deformation of the active-site gorge: implications for structure-based drug design. J Am Chem Soc. 2004 Dec 1;126(47):15405-11. PMID:15563167 doi:http://dx.doi.org/10.1021/ja0466154
- ↑ Kryger G, Silman I, Sussman JL. Structure of acetylcholinesterase complexed with E2020 (Aricept): implications for the design of new anti-Alzheimer drugs. Structure. 1999 Mar 15;7(3):297-307. PMID:10368299
- ↑ Sanson B, Nachon F, Colletier JP, Froment MT, Toker L, Greenblatt HM, Sussman JL, Ashani Y, Masson P, Silman I, Weik M. Crystallographic Snapshots of Nonaged and Aged Conjugates of Soman with Acetylcholinesterase, and of a Ternary Complex of the Aged Conjugate with Pralidoxime (dagger). J Med Chem. 2009 Jul 30. PMID:19642642 doi:10.1021/jm900433t
Treatments:AChE Inhibitor References
Treatments:Alzheimer's Disease
Proteopedia Page Contributors and Editors (what is this?)
Michal Harel, Joel L. Sussman, Alexander Berchansky, David Canner, Eran Hodis, Clifford Felder, Jaime Prilusky, Harry Greenblatt, Yechun Xu




