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Combined display of all available logs of Proteopedia. You can narrow down the view by selecting a log type, the user name, or the affected page.
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- 18:18, 28 April 2021 Karsten Theis (Talk | contribs) uploaded "Image:Morph hexokinase2.pdb" (see remarks in file)
- 12:58, 28 April 2021 Karsten Theis (Talk | contribs) uploaded a new version of "Image:Storymorph.spt"
- 12:44, 28 April 2021 Karsten Theis (Talk | contribs) uploaded "Image:Storymorph.spt" (Script with various functions to set up, run and save a morph between two conformations of a molecule. The two molecules can be in the same asymmetric unit, in different models of a file or from two different files as long as the superimposed parts of the)
- 16:51, 13 April 2021 Karsten Theis (Talk | contribs) uploaded a new version of "Image:Morph hexokinase.pdb"
- 15:57, 13 April 2021 Karsten Theis (Talk | contribs) uploaded "Image:Morph hexokinase.pdb"
- 15:09, 13 April 2021 Karsten Theis (Talk | contribs) uploaded "Image:Induced fit.gif" (Morph of hexokinase structure 3O8M and 3O80, treating residues 82-210 as rigid domain anchored at residues 81 and 211. Glucose present in the closed conformation but absent in the open structure is shown in purple, with residues 82-210 in green an)
- 21:46, 11 April 2021 Karsten Theis (Talk | contribs) User:Karsten Theis/Jmol/debugging moved to Jmol/debugging (So others can edit) (revert)
- 20:49, 10 April 2021 Karsten Theis (Talk | contribs) uploaded "Image:Morph.spt" (Macros to morph within Jmol, written by Karsten Theis)
- 19:49, 3 April 2021 Karsten Theis (Talk | contribs) uploaded "Image:Proteopedia Editor Icons.JPG" (Table of icons in the Proteopedia page editor along with explanations and comments.)
- 19:48, 3 April 2021 Karsten Theis (Talk | contribs) uploaded "Image:Proteopedia text editor.JPG" (Table of icons in the Proteopedia page editor along with explanations and comments.)
- 14:47, 3 April 2021 Karsten Theis (Talk | contribs) uploaded a new version of "Image:Proteopedia New Page Annotated.JPG"
- 14:11, 3 April 2021 Karsten Theis (Talk | contribs) uploaded "Image:Proteopedia New Page Annotated.JPG" (When you start a new page in Proteopedia, this is the template that appears. Highlighted are the code that creates the 3D Jmol window (yellow), the green links (green) and the references (tan).)
- 02:45, 22 March 2021 Karsten Theis (Talk | contribs) uploaded "Image:Atp site.pdb" (Multi-model PDB file with 136 ATP binding sites superposed with respect to the adenine moiety.)
- 02:43, 22 March 2021 Karsten Theis (Talk | contribs) uploaded "Image:ILEwriteup2021.pdf" (Independent learning exercises (ILE) for a biochemistry course. Each student is assigned a PDB ID of a protein bound to ATP. Over the course of the semester, students learn about the structure and function of "their" protein. There are 136 structures to c)
- 19:22, 7 March 2021 Karsten Theis (Talk | contribs) uploaded "Image:Swimmers.gif" (Spike protein conformation change, see https://proteopedia.org/wiki/index.php/User:Karsten_Theis/Rigid_body_interpolation)
- 23:07, 6 March 2021 Karsten Theis (Talk | contribs) uploaded "Image:MorphRigid6xr86xra.pdb" (Morph created in Jmol app using this script: function linear(progress) { coord1 = {sel1}.xyz.all coord2 = {sel2}.xyz.all len = coord1.length ssergorp = 1 - progress for (var i FROM [1,len]) {coord1[i] = (coord2[i] * progress + coord1[i] * sserg)
- 15:17, 5 March 2021 Karsten Theis (Talk | contribs) uploaded a new version of "Image:SuperX-6xr8-6xra-theis-cao.pdb"
- 15:13, 5 March 2021 Karsten Theis (Talk | contribs) uploaded "Image:SuperX-6xr8-6xra-theis-cao.pdb" (Variant of Super-6xr8-6xra-theis-cao.pdb with selected residues changed from chain A to chain X)
- 15:08, 5 March 2021 Karsten Theis (Talk | contribs) uploaded "Image:SuperB-6xr8-6xra-theis-cao.pdb" (Adapted from Super-6xr8-6xra-theis-cao.pdb with some residues changed to B chain.)
- 13:24, 5 March 2021 Karsten Theis (Talk | contribs) uploaded "Image:Super-6xr8-6xra-theis-cao.pdb" (See remarks in file: REMARK Superposition of 6xr8 and 6xra REMARK File name: Super-6xr8-6xra-theis-cao.pdb REMARK Adapted from Morf-6xr8-6xra-theis-cao.pdb by rataning first and last model Original file by Eric Martz)
- 16:46, 16 February 2021 Karsten Theis (Talk | contribs) Help:Viewing moved to Help:Viewing pages (revert)
- 16:44, 16 February 2021 Karsten Theis (Talk | contribs) Viewing guide moved to Help:Viewing (Easier to find help page) (revert)
- 15:47, 16 February 2021 Karsten Theis (Talk | contribs) Teaching Strategies Using Proteopedia moved to Help:Teaching with Proteopedia (Make it easier to find when listing all Help: and Proteopedia: pages) (revert)
- 14:54, 11 February 2021 Karsten Theis (Talk | contribs) RNA Polymerase moved to RNA polymerase over redirect (Search engine "optimization") (revert)
- 14:53, 11 February 2021 Karsten Theis (Talk | contribs) RNA polymerase moved to RNA Polymerase (search engine) (revert)
- 14:46, 11 February 2021 Karsten Theis (Talk | contribs) Talk:Rossman fold moved to Talk:Rossmann fold over redirect (correct spelling) (revert)
- 14:46, 11 February 2021 Karsten Theis (Talk | contribs) Rossman fold moved to Rossmann fold over redirect (correct spelling) (revert)
- 14:45, 11 February 2021 Karsten Theis (Talk | contribs) Talk:Rossmann fold moved to Talk:Rossman fold (typos) (revert)
- 14:45, 11 February 2021 Karsten Theis (Talk | contribs) Rossmann fold moved to Rossman fold (typos) (revert)
- 18:01, 15 November 2020 Karsten Theis (Talk | contribs) uploaded a new version of "Image:SAT overview.pdf"
- 19:01, 31 October 2020 Karsten Theis (Talk | contribs) uploaded a new version of "Image:SAT overview.pdf" (This is an overview of the user interface of the scene authoring tools (SAT) of Proteopedia as of 10/31/2020.)
- 18:34, 31 October 2020 Karsten Theis (Talk | contribs) uploaded a new version of "Image:SAT overview.pdf"
- 13:31, 28 October 2020 Karsten Theis (Talk | contribs) uploaded a new version of "Image:ATPdirecttransition.spt"
- 13:19, 28 October 2020 Karsten Theis (Talk | contribs) uploaded "Image:ATPdirecttransition.spt"
- 10:33, 28 October 2020 Karsten Theis (Talk | contribs) uploaded "Image:SAT show.JPG"
- 10:29, 28 October 2020 Karsten Theis (Talk | contribs) uploaded "Image:Structure buttons.JPG"
- 21:53, 27 October 2020 Karsten Theis (Talk | contribs) uploaded "Image:SAT build selection.JPG"
- 21:20, 27 October 2020 Karsten Theis (Talk | contribs) uploaded "Image:SAT controls outside of tabs.JPG"
- 21:15, 27 October 2020 Karsten Theis (Talk | contribs) uploaded a new version of "Image:SAT tabs.JPG"
- 21:11, 27 October 2020 Karsten Theis (Talk | contribs) uploaded "Image:SAT tabs.JPG"
- 19:52, 27 October 2020 Karsten Theis (Talk | contribs) uploaded "Image:SAT overview.png"
- 00:58, 26 October 2020 Karsten Theis (Talk | contribs) uploaded a new version of "Image:SAT overview.pdf"
- 00:46, 26 October 2020 Karsten Theis (Talk | contribs) uploaded a new version of "Image:SAT overview.pdf"
- 00:29, 26 October 2020 Karsten Theis (Talk | contribs) uploaded a new version of "Image:SAT overview.pdf"
- 11:15, 23 October 2020 Karsten Theis (Talk | contribs) uploaded "Image:SAT overview.pdf" (This shows the user interface of the scene authoring tool (as of 10/22/2020), demonstrating the workflow of creating or editing a scene and saving it.)
- 12:51, 14 October 2020 Karsten Theis (Talk | contribs) uploaded "Image:Chymotrypsin mechanism.gz" (This is a collection of images used to make a movie about the chymotrypsin mechanism. Structures were drawn with MarvinJS, and recolorized in Gimp. The images are in PNG format and are transparent for easy overlays and animations in slide presenting softw)
- 14:49, 10 October 2020 Karsten Theis (Talk | contribs) uploaded "Image:1F36 pbeq.pdb" (Coordinates of 1f36 with hydrogen atoms added by http://www.charmm-gui.org/?doc=input/pbeqsolver.)
- 14:47, 10 October 2020 Karsten Theis (Talk | contribs) uploaded "Image:1F36.jvxl" (Electrostatic potential map, created from 1f36 coordinates at http://www.charmm-gui.org/?doc=input/pbeqsolver, visualized and saved in the Jmol app using "load "1F36_pbeq.pdb";isosurface ID test solvent 1.4 color range -5.0 5.0 map "1F36_pbeq.dx"; write)
- 13:57, 10 October 2020 Karsten Theis (Talk | contribs) uploaded "Image:Water with atomic partial charges.pdb" (This was calculated with molcalc.org and is a mol2 file)
- 11:04, 8 October 2020 Karsten Theis (Talk | contribs) uploaded a new version of "Image:ATP.pdb" (ATP loaded with "load $ATP" and saved with "write ATP.pdb" in Jmol.)
