File list
From Proteopedia
 Date |
Name | User | Size | Description |
|---|---|---|---|---|
| 19:19, 14 July 2009 | RPo_Darst.pdb.gz (file) | Tommie Hata | 432 KB | |
| 14:45, 14 July 2009 | 4ins.jpg (file) | Ted Scovell | 26 KB | |
| 13:52, 14 July 2009 | Rpo-Darst.pdb (file) | Tommie Hata | 1.71 MB | (2006 S.M.A.R.T. Team project, Prokaryotic RNAP Open Promoter Complex modeled by Seth Darst www.pingrysmartteam.com) |
| 12:20, 7 July 2009 | Z-dna.pdb (file) | Adithya Sagar | 19 KB | (Z-DNA created from PDB file 1QBJ) |
| 15:27, 1 July 2009 | 3bre_tetra.pdb (file) | Tilman Schirmer | 695 KB | (WspR tetramer. Chains C and D, generated form the asymmetric unit of 3bre by application of 2-fold crystallographic symmetry. Chains A and B (3bre) and chains C and D form together a tetramer of approximate 222 symmetry.) |
| 15:23, 1 July 2009 | 3bre_cd.pdb (file) | Tilman Schirmer | 356 KB | (Chains C and D, generated form the asymmetric unit of 3bre by application of 2-fold crystallographic symmetry. Chains A and B (3bre) and chains C and D form together a tetramer of approximate 222 symmetry.) |
| 07:19, 1 July 2009 | Pdb3e2t.pdb (file) | Michael Skovbo Windahl | 266 KB | (pdb file for 3e2t with changed description of active sites) |
| 11:14, 24 June 2009 | DisorderAA.jpg (file) | Tzviya Zeev-Ben-Mordehai | 122 KB | |
| 11:19, 23 June 2009 | FoldIndex.jpeg (file) | Tzviya Zeev-Ben-Mordehai | 191 KB | |
| 06:53, 23 June 2009 | 1w76_ss.pdb (file) | Harry Greenblatt | 745 KB | (In the original PDB entry, secondary structure definitions exist only for Chain A, but not for Chain B. This has been added here.) |
| 19:25, 22 June 2009 | IntercalationLoopWebLogo.jpg (file) | Ramiro Barrantes | 112 KB | |
| 13:25, 22 June 2009 | 1ema_Dov_4.gif (file) | Student | 52 KB | |
| 12:06, 21 June 2009 | 1W4Lnew.png (file) | Harry Greenblatt | 392 KB | (Bis acting Galanthamine derivative (yellow carbon atoms) bound to TcAChE, showing Asp72, Trp84, Ser200, Trp279, and His440 (green carbon atoms). See PDB file 1W4L.) |
| 11:41, 21 June 2009 | 1and3.png (file) | Harry Greenblatt | 37 KB | ( Native galanthamine (1) and a bis-acting iminium phthalimido derivative (3)) |
| 10:40, 21 June 2009 | PleD_product2r.pdb (file) | Tilman Schirmer | 198 KB | (competent GGDEF dimer (PleD, 1w25) with bound GTP molecules and Mg. THIS IS A THEROTICAL MODEL!) |
| 09:12, 21 June 2009 | 1W6R_new.png (file) | Harry Greenblatt | 381 KB | (Pymol generated image showing Galanthamine derivative (yellow carbon atoms) bound in active site of TcAChE. Enzyme residues Asp72, Trp84, Ser200, Trp279, and His440 shown with green carbon atoms.) |
| 19:28, 20 June 2009 | Pled_domains_1.jpg (file) | Tilman Schirmer | 19 KB | (PleD domains (1w25)) |
| 10:10, 19 June 2009 | 2v0n_small_smaller2.png (file) | Tilman Schirmer | 60 KB | (Smaller version2 of 2v0n_small.pgn) |
| 06:42, 18 June 2009 | 1and5.png (file) | Harry Greenblatt | 26 KB | (Native Galanthamine (1) and the imine derivative (5) used to form this complex) |
| 11:25, 14 June 2009 | MyPdbFile.pdb (file) | Fabian Glaser | 24 KB | |
| 07:11, 12 June 2009 | PdeA1_ACEXY_GGDEF_1w25_r.pdb (file) | Tilman Schirmer | 86 KB | (Homology model of the GGDEF domain of PdeA1_ACEXY, Template 1w25, renamed) |
| 07:10, 12 June 2009 | PdeA1_ACEXY_EAL_2r6o_r.pdb (file) | Tilman Schirmer | 127 KB | (Homology model of the EAL domain of PdeA1_ACEXY, Template 2r6o, renamed) |
| 06:48, 12 June 2009 | Dgc1_ACEXY_EAL_2r6o_r.pdb (file) | Tilman Schirmer | 128 KB | (Homology model of the EAL domain of Dgc1_ACEXY, Template 2r6o, renamed) |
| 06:36, 12 June 2009 | Dgc1_ACEXY_GGDEF_1w25_r.pdb (file) | Tilman Schirmer | 87 KB | (Homology model of the GGDEF domain of Dgc1_ACEXY, Template 1w25, renumbered) |
| 08:50, 9 June 2009 | Eric_1Day_Workshop_Osaka2009_small.jpg (file) | Eric Martz | 117 KB | |
| 11:14, 8 June 2009 | Flagellar_hook_3rings.pdb.gz (file) | Eric Martz | 202 KB | (3 rings of 11 chains from the curved model of the flagellar hook by Samatey et al., 2004 PMID 15510139. Alpha carbon atoms only. Each of the 11 protofilaments has the same name for all 3 chains A,B,D,E,F,G,H,I,J,K,L, except the middle chain of A is W, and) |
| 03:51, 8 June 2009 | 1wlg_1.mmol (file) | Eric Martz | 173 KB | (Monomer of 1wlg obtained from http://pqs.ebi.ac.uk. Redistribution of data is in accord with EBI's terms of use: "The EBI itself places no restrictions on the use or redistribution of the data available via its services. " (from http://www.ebi.ac.uk/Infor) |
| 03:14, 6 June 2009 | HIV_for_Proteopedia.JPG (file) | Lois A. Fridmann | 72 KB | |
| 06:05, 5 June 2009 | Flagellum1_800px.jpg (file) | Eric Martz | 67 KB | (Keiichi Namba and Fadel Samatey, the authors of this image, gave permission for it to be used in Proteopedia.) |
| 12:22, 4 June 2009 | H4b_hydrogenbindinger2.png (file) | Sara Toftegaard Petersen | 46 KB | |
| 12:14, 4 June 2009 | HemeChemDraw2.png (file) | Sara Toftegaard Petersen | 12 KB | |
| 07:56, 2 June 2009 | SPRY.human.model.pdb (file) | Emi Nakayama | 116 KB | (SPRY domain of human TRIM5a made by Kasia based on 2VOL.) |
| 06:19, 2 June 2009 | FILE_consurf1243922409_pipe.pdb (file) | Emi Nakayama | 126 KB | |
| 05:20, 2 June 2009 | Kasia-Swiss.pdb (file) | Emi Nakayama | 1.08 MB | (Homology model of human TRIM5a made by Kasia, morphed by the Yale Morph Server to homology model made by Swiss Model using 2fbe:A as template.) |
| 10:17, 1 June 2009 | Mette.png (file) | Mette Trauelsen | 11 KB | |
| 08:34, 29 May 2009 | YdiV_ECOLI_EAL_2r6o.pdb (file) | Tilman Schirmer | 150 KB | (Homology model of the EAL domain of YdiV_ECOLI, template 2r6o) |
| 08:13, 29 May 2009 | YegE_ECOLI_GGDEF_1w25_r.pdb (file) | Tilman Schirmer | 124 KB | (Homology model of the GGDEF domain of YegE_ECOLI, template 1w25, renamed) |
| 08:00, 29 May 2009 | YddU_ECOLI_GGDEF_1w25_r2.pdb (file) | Tilman Schirmer | 98 KB | (Homology model 2 of the GGDEF domain of YddU_ECOLI, Template 1w25, renamed) |
| 06:48, 29 May 2009 | 1yab.mmol (file) | Akihiro Kawamoto | 180 KB | (Reverted to version as of 06:46, 29 May 2009) |
| 06:29, 29 May 2009 | 1j4n.mmol (file) | Student | 525 KB | (The tetrametric state of 1J4N(Aquaporin)) |
| 09:04, 26 May 2009 | Cation-pi-dougherty.jpg (file) | Eric Martz | 22 KB | (Image from [http://www.its.caltech.edu/~dadgrp/research/molrec/index.html] used with permission of Dennis Dougherty. Text added by Eric Martz.) |
| 21:59, 23 May 2009 | ZincFingerComparison.png (file) | Ramiro Barrantes | 268 KB | |
| 20:42, 23 May 2009 | PlantSpecific.jpg (file) | Ramiro Barrantes | 60 KB | |
| 12:28, 23 May 2009 | 2hu4_3cl0_aligned.pdb (file) | Eric Martz | 478 KB | |
| 19:15, 21 May 2009 | Lys60Stability.jpg (file) | Ramiro Barrantes | 129 KB | |
| 18:36, 21 May 2009 | ZincFinger.jpg (file) | Ramiro Barrantes | 96 KB | |
| 16:21, 21 May 2009 | F2WebLogo.jpg (file) | Ramiro Barrantes | 107 KB | |
| 16:03, 21 May 2009 | F1WebLogo.jpg (file) | Ramiro Barrantes | 94 KB | |
| 12:26, 20 May 2009 | 3g73.png (file) | OCA | 337 KB | (Source Jena Library http://www.fli-leibniz.de/IMAGE.html) |
| 12:18, 20 May 2009 | 3fpn.png (file) | OCA | 228 KB | (Source Jena Library http://www.fli-leibniz.de/IMAGE.html) |
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