Ionotropic Glutamate Receptors

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Structure of the Ionotropic Glutamate Receptor, GluA2, (3kg2)

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This article was developed based on lectures given in Chemistry 543 by Prof. Clarence E. Schutt at Princeton University.

3D structures of glutamate receptor

Ionotropic glutamate receptor 0

2pyy - IGluR2 ligand-binding domain + Glu – Nostoc punctiforme

Ionotropic glutamate receptor 2

3n6v, 3o2j - rIGluR2 N-terminal domain (mutant) – rat
3hsy, 3h5v, 3h5w - rIGluR2 N-terminal domain
2wjw, 2wjx – hIGluR2 N-terminal domain - human
3rn8, 3rnn – hIGluR2 ligand-binding domain + potentiator
3bki - rIGluR2 ligand-binding domain + inhibitor
1fto - rIGluR2 ligand-binding domain

GluR2 positive allosteric modulator complex

2xhd - hIGluR2 ligand-binding domain + positive allosteric modulator + Glu
2al4, 1p1o - rIGluR2 ligand-binding domain (mutant) + positive allosteric modulator
2xx8, 2xx7, 2xx9, 2xxh, 2xxi, 3lsf, 3h6t, 3h6u, 3h6v, 3h6w, 3bbr - rIGluR2 ligand-binding domain (mutant) + positive allosteric modulator + Glu
3pmv, 3pmw, 3pmx, 3o28, 3o29, 3o2a, 3o6g, 3o6h, 3o6i, 3m3l, 3lsl - rIGluR2 ligand-binding domain + positive allosteric modulator + Glu
1mm6, 1mm7 - rIGluR2 ligand-binding domain + positive allosteric modulator
3ijo, 3ijx, 3ik6, 3il1, 3ilt, 3ilu - rIGluR2 + positive allosteric modulator + Glu

GluR2 antagonist complex

3r7x - hIGluR2 + antagonist
3kgc, 3kg2, 2cmo - rIGluR2 ligand-binding domain + antagonist + Glu
3h03, 3h06, 3b7d, 1n0t, 1ftl - rIGluR2 ligand-binding domain + antagonist
1lb9 - rIGluR2 ligand-binding domain (mutant) + antagonist

GluR2 agonist complex

3rtf, 3rtw, 3pd8, 3pd9, 3bft, 3bfu, 1wvj, 1syh, 1syi, 1ms7, 1mqd, 1nnp, 1nnk, 1m5b, 1m5c, 1m5d, 1m5e, 1m5f, 1ftm - rIGluR2 ligand-binding domain + agonist
3b6t, 2al5, 2anj, 1p1q, 1p1u, 1p1w, 1lb8 - rIGluR2 ligand-binding domain (mutant) + agonist
1lbc - rIGluR2 ligand-binding domain (mutant) + agonist + Glu
2p2a - rIGluR2 ligand-binding domain + agonist + Glu

GluR2 partial agonist complex

1y1m, 2aix, 1y1z, 1y20, 1mqg, 1mqh, 1mqi, 1mqj, 1mxu, 1mxv, 1mxw, 1mxx, 1mxy, 1mxz, 1my0, 1my1, 1my2, 12my3, 1my4, 1fw0, 1ftk, 1gr2 - rIGluR2 ligand-binding domain + partial agonist
1xhy, 1p1n, 1lbb - rIGluR2 ligand-binding domain (mutant) + partial agonist

GluR2 ligand complex

3dp6, 2uxa, 2i3v, 2i3w, 1ftj - rIGluR2 ligand-binding domain + Glu
3b6q, 3b6w, 2gfe - rIGluR2 ligand-binding domain (mutant) + Glu

Ionotropic glutamate receptor 3

3o21, 3p3w – rIGluR3 N-terminal domain
3m3k – rIGluR3 ligand-binding domain
3rt6, 3rt8, 3dp4 – rIGluR3 ligand-binding domain + agonist
3m3f – rIGluR3 ligand-binding domain + allosteric modulator
3dln - rIGluR3 ligand-binding domain + Glu

Ionotropic glutamate receptor 4

3epe, 3fas - rIGluR4 ligand-binding domain + Glu
3kei – rIGluR4 ligand-binding domain (mutant) + Glu
3kfm - rIGluR4 ligand-binding domain (mutant) + partial agonist
3en3 - rIGluR4 ligand-binding domain + partial agonist
3fat – rIGluR4 ligand-binding domain + agonist


Ionotropic glutamate receptor 5

3fuz, 2zns – hIGluR5 ligand-binding domain + Glu
1txf - rIGluR5 ligand-binding domain + Glu
2ojt - rIGluR5 + anion
3fv1, 3fv2, 3fvg, 3fvk, 3fvn, 3fvo, 2znt, 2znu - hIGluR5 ligand-binding domain + agonist
3c31, 3c32, 3c33, 3c34, 3c35, 3c36 - rIGluR5 ligand-binding domain + ion
2wky, 3gba, 3gbb, 2pbw, 2f34, 2f35, 2f36 – rIGluR5 ligand-binding domain + agonist
2qs1, 2qs2, 2qs3, 2qs4 - rIGluR5 ligand-binding domain (mutant) + agonist
1vso - rIGluR5 ligand-binding domain + antagonist


Ionotropic glutamate receptor 6

3h6g, 3h6h – rIGluR6 N-terminal domain
3g3f, 1sd3, 1s50, 1s7y – rIGluR6 ligand-binding domain + Glu
3g3g, 3g3h, 3g3i, 3g3j, 3g3k, 2i0b, 2i0c - rIGluR6 ligand-binding domain (mutant) + Glu
1s9t – rIGluR6 ligand-binding domain + positive allosteric modulator
1tt1 – rIGluR6 ligand-binding domain + partial agonist

Metabotropic glutamate receptor 1

1ewt, 1ewv - rMGluR1 ligand-binding domain
3ks9 – hMGluR1 (mutant) + antagonist
1isr, 1ewk – rMGluR1 ligand-binding domain + Glu
1iss - rMGluR1 ligand-binding domain + antagonist

Metabotropic glutamate receptor 3

2e4u – hMGluR3 ligand-binding domain (mutant) + Glu
2e4v, 2e4w, 2e4x, 2e4y, 2e4z - hMGluR3 ligand-binding domain (mutant) + agonist

Metabotropic glutamate receptor 5

3lmk – hMGluR5 ligand-binding domain (mutant) + positive allosteric modulator + Glu

Metabotropic glutamate receptor 7

3mq4 – hMGluR7 ligand-binding domain + antagonist

Ionotropic kainate receptor 1

1ycj – rGluK1 ligand-binding domain + Glu

Ionotropic kainate receptor 2

2xxr – rGluK2 ligand-binding domain + Glu
2xxu, 2xxx – rGluK2 ligand-binding domain (mutant) + Glu
2xxt – rGluK2 ligand-binding domain + partial agonist
2xxv, 2xxy – rGluK2 ligand-binding domain (mutant) + partial agonist
1yae - rGluK2 ligand-binding domain + agonist

Ionotropic kainate receptor 3

3olz – rGluK3 N-terminal domain

Ionotropic kainate receptor 5

3om0, 3om1 – rGluK5 N-terminal domain











Additional Resources

For additional information on the Symmetry of the Glutamate Receptor, See: Glutamate Receptor Symmetry Analysis
For Additional Information, See: Membrane Channels & Pumps
For Additional Information, See: Alzheimer's Disease

References

  1. 1.0 1.1 1.2 Jin R, Clark S, Weeks AM, Dudman JT, Gouaux E, Partin KM. Mechanism of positive allosteric modulators acting on AMPA receptors. J Neurosci. 2005 Sep 28;25(39):9027-36. PMID:16192394 doi:25/39/9027
  2. 2.0 2.1 2.2 2.3 2.4 2.5 2.6 Sobolevsky AI, Rosconi MP, Gouaux E. X-ray structure, symmetry and mechanism of an AMPA-subtype glutamate receptor. Nature. 2009 Dec 10;462(7274):745-56. Epub . PMID:19946266 doi:10.1038/nature08624
  3. 3.0 3.1 3.2 3.3 Purcell AE, Jeon OH, Zimmerman AW, Blue ME, Pevsner J. Postmortem brain abnormalities of the glutamate neurotransmitter system in autism. Neurology. 2001 Nov 13;57(9):1618-28. PMID:11706102
  4. Welsh JP, Ahn ES, Placantonakis DG. Is autism due to brain desynchronization? Int J Dev Neurosci. 2005 Apr-May;23(2-3):253-63. PMID:15749250 doi:10.1016/j.ijdevneu.2004.09.002
  5. Zuo J, De Jager PL, Takahashi KA, Jiang W, Linden DJ, Heintz N. Neurodegeneration in Lurcher mice caused by mutation in delta2 glutamate receptor gene. Nature. 1997 Aug 21;388(6644):769-73. PMID:9285588 doi:10.1038/42009
  6. Rubenstein JL, Merzenich MM. Model of autism: increased ratio of excitation/inhibition in key neural systems. Genes Brain Behav. 2003 Oct;2(5):255-67. PMID:14606691
  7. Jin R, Singh SK, Gu S, Furukawa H, Sobolevsky AI, Zhou J, Jin Y, Gouaux E. Crystal structure and association behaviour of the GluR2 amino-terminal domain. EMBO J. 2009 Jun 17;28(12):1812-23. Epub 2009 May 21. PMID:19461580 doi:10.1038/emboj.2009.140
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