FirstGlance/How to get average pLDDT from AlphaFold models

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It is easy to get the average confidence (pLDDT) for any range of residues in an AlphaFold model by using FirstGlance in Jmol.

  1. Download the predicted structure as a .pdb file (or .cif file if .pdb is not available).
  2. If only the .cif file is available, convert it to .pdb format.
  3. Go to FirstGlance in Jmol, and Upload the .pdb file.
  4. After the model is displayed in FirstGlance, scroll down in the upper left panel and click Find.. in the Focus Box:

See Also

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