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  1. Image:Jbic logo.jpg (24 bytes)
  2. Journal:JBIC:18 (3,745 bytes)
    1: ...on load='' size='450' side='right' scene='Journal:JBIC:18/Cv/1' caption=''>
    3: ...arco Fragai and Claudio Luchinat</big> <ref>pmid 23197251 </ref>
    6: ...4. The solution structure of <scene name='Journal:JBIC:18/Cv/5'>homodimeric S100A14</scene> (<span style...
    8: ...siological conditions. Apo and holo form of S100A13 are reported as open and closed stars, respective...
    10: ...racting aromatic residues in <scene name='Journal:JBIC:18/Cv/6'>helix I (Phe-29) and helix IV (Phe-81, P...
  3. Journal:JBIC:19 (4,106 bytes)
    1: ...size='450' side='right' scene='Journal:JBIC:19/Cv/3' caption=''>
    2: === Heterometallic [AgFe<sub>3</sub>S<sub>4</sub>] ferredoxin variants – synth...
    3: ...ns Erik Mølager Christensen</big><ref >pmid 23296387 </ref>
    6: ...edoxin (Fd) D14C variant with the novel [AgFe<sub>3</sub>S<sub>4</sub>] heterometallic cluster was de...
    7: ...e S – Ag – S <scene name='Journal:JBIC:19/Cv/13'>bond angles</scene> are still close to the expec...
  4. Journal:JBIC:20 (2,595 bytes)
    1: ...on load='' size='450' side='right' scene='Journal:JBIC:20/Cv/2' caption=''>
    4: ...asz Berlicki, and Stefano Ciurli</big> <ref>pmid 23412551 </ref>
    7: ...i and OH are in darkmagenta, of note, His249, His139, and Kcx220<ref>Kcx - Lysine NZ-carboxylic acid<...
  5. Journal:JBIC:31 (3,075 bytes)
    3: ... S. Dobbin, Michael A. Hough</big> <ref>PMID 25792378 </ref>
    6: ...roup in yellow</span>). <scene name='69/696899/Cv/3'>Each monomer of the SFCP dimer folds as a 4-alph...
  6. Journal:JBIC:Working (288 bytes)
    1: ...ent_in_Proteopedia|Interactive 3D Complement]] to JBIC papers.
  7. Journal:JBIC:1 (3,849 bytes)
    1: ..."" frame="true" spin="on" Scene ="Journal:JBIC:1/Jbic1_opening/2" side="right" caption="Crystal structu...
    7: ...TP:AMP phosphotransferase, [[EC Number|EC]] 2.7.4.3; AK) is an essential catalyst for cellular growth...
    10: ...Journal:JBIC:1/Fe_bound/8'>Fe2+, Fe-AK</scene> ([[3l0p]]) bound in its LID domain have been determine...
    11: ...y structure of the enzyme. A <scene name='Journal:JBIC:1/Walker/4'>Walker motif</scene> with conserved s...
    13: ... Gram-negative bacteria ''Desulfovibrio gigas'' [[3l0s]].
  8. Journal:JBIC:2 (2,050 bytes)
    1: ...size='350' side='right' caption='' scene='Journal:JBIC:2/Opening/1'>
    2: ...andwich Complex Bound to Glycogen Synthase Kinase 3ß===
    6: ...and to interact tightly with <scene name='Journal:JBIC:2/Glycine_rich_loop2/4'>the flexible glycine-rich...
    8: ...ch Complex Bound to Glycogen Synthase Kinase 3, [[3m1s]].
  9. Image:JBIC 1.1.pdb (13 bytes)
    1: JBIC 1.1 Jmol
  10. Sandbox 1 JBIC (3,572 bytes)
    1: ..."" frame="true" spin="on" Scene ="Journal:JBIC:1/Jbic1_opening/2" align="right" caption="Crystal struct...
    9: ...late kinase (ATP:AMP phosphotransferase, EC 2.7.4.3; AK) is an essential catalyst for cellular growth...
    12: ...ed by X-ray crystallography. <scene name='Journal:JBIC:1/Super/10'>All three crystal structures are very...
    15: ...y structure of the enzyme. A <scene name='Journal:JBIC:1/Walker/4'>Walker motif</scene> with conserved s...
  11. Journal:JBIC:4 (2,944 bytes)
    1: ...tant' scene='Journal:JBIC:4/Heme_bound_ferro_open/3'>
    2: === Bacterial ferrochelatase turns human: Tyr13 determines the apparent metal specificity of ''Ba...
    7: ...5'>other shows</scene> how a <scene name='Journal:JBIC:4/Bound_cu_por/4'>copper in a reaction product (c...
    9: ...ariant of ''Bacillus subtilis'' ferrochelatase, [[3goq]].
  12. Journal:JBIC:0 (204 bytes)
  13. Journal:JBIC:3 (3,108 bytes)
    1: ...'Solved Structure of S100A16' scene='Journal:JBIC:3/Calcium_binding_start/7'>
    3: ...omo Parigi</big><ref >DOI 10.1007/s00775-010-0721-3</ref>
    6: ...e most <scene name='Journal:JBIC:3/Flexible_broad/3'>flexible regions in both the apo and calcium(II)...
    8: ...-ray structure of the apo form of human S100A16 [[3nxa]]; Solution structure of calcium bound S100A16...
  14. Journal:JBIC:5 (4,665 bytes)
    1: <StructureSection size="450" scene ="Journal:JBIC:5/Opening/2" caption="Solved Crystal Structure of...
    3: ... Lawrence Que</big> <ref>DOI 10.1007/s00775-010-0732-0</ref>
    6: ...1'>Homoprotocatechuate 2,3-dioxygenase</scene> (2,3-HPCD) from ''Brevibacterium fuscum''.
    8: ...his dioxygenase is highly unlikely. Rather, the 2,3-HPCD enzyme can carry out the O<sub>2</sub> activ...
    10: ...echuate 2,3-Dioxygenase at 1.70 Ang resolution, [[3ojt]].
  15. Journal:JBIC:6 (3,666 bytes)
    1: <StructureSection size="450" scene ="Journal:JBIC:6/Opening/5" caption="Solved Crystal Structures o...
    3: ... Shenlin Wang</big> <ref>DOI 10.1007/s00775-010-0735-x</ref>
    6: ...g/7'>Sco domains</scene> and <scene name='Journal:JBIC:6/Cyt_c_openin/1'>cyt c</scene>, separately expre...
    8: ...and the conserved His region <scene name='Journal:JBIC:6/Cu_eukaryotic_cxxxc_hydro_in/1'>freeze the copp...
    10: '''PDB reference:''' Cytochrome c domain of pp3183 protein from ''Pseudomonas putida'', [[2l4d]].
  16. Journal:JBIC:7 (3,695 bytes)
    1: ... color="" frame="true" spin="on" Scene ="Journal:JBIC:7/Cv/2" side="right" caption="Cytochrome c6">
    6: ... determined and all have the <scene name='Journal:JBIC:7/Cv/7'>methionine ligand coordinating to the iro...
    8: ... alpha helix</scene> and the <scene name='Journal:JBIC:7/Cv/21'>displacement of two loop regions</scene>...
    10: ...ediate that is stabilised by <scene name='Journal:JBIC:7/Cv/15'>imidazole binding to the vacant heme iro...
    12: ...rmidium laminosum'' cytochrome c6 Q51V variant, [[3ph2]].
  17. Journal:JBIC:8 (4,944 bytes)
    1: ...Jbic8.pdb' size='450' side='right' scene='Journal:JBIC:8/Cv/1' caption=''>
    3: ...ki Matsuoka</big><ref>DOI 10.1007/s00775-011-0761-3</ref>
    6: ...main globins are comprised of three-over-three (3/3) α-helical folds, as is myoglobin (Mb). Second, ...
    8: ...b) was first discovered by Keilin and Ryley in 1953.
    12: ...al oxygen atom. Furthermore, <scene name='Journal:JBIC:8/Trhb/4'>Tyr25 was hydrogen-bonded to the Gln46 ...
  18. Journal:JBIC:9 (3,634 bytes)
    1: ...ic91a.pdb' size='450' side='right' scene='Journal:JBIC:9/Cv/18' caption=''>
    6: ...ne> revealed that <scene name='Journal:JBIC:9/Cv2/3'>only small structural adaptations were necessary...
  19. Journal:JBIC:10 (3,536 bytes)
    1: ...oad='2z8q' size='450' side='right' scene='Journal:JBIC:10/Cv1/2' caption=''>
    2: ...''Pyrococcus furiosus'' ferredoxin: [4Fe-4S] <-> [3Fe-4S] cluster conversion ===
    6: ...single conformation</scene> (<scene name='Journal:JBIC:10/Cv1/11'>click to see morph</scene>, molecule A...
    8: ...eft|300px|thumb|pH dependent equilibrium of D14C [3Fe-4S] ''P. furiosus'' ferredoxin between protonat...
    10: ...ne>) and <scene name='Journal:JBIC:10/Cv2/10'>WT [3Fe-4S]</scene>).
  20. Journal:JBIC:11 (3,578 bytes)
    1: ...Jb11b.pdb' size='450' side='right' scene='Journal:JBIC:11/Cv/2' caption=''>
    8: ...n)</b></font>. This exposure <scene name='Journal:JBIC:11/Cv/9'>causes significant conformational change...
    9: ...BIC:11/Exp/4'>small srtuctural changes</scene> ([[3qvd]]). Both these exposures identified previously...
    13: ...iosus'' to peroxide, fifteen second time point, [[3qvd]].

Page text matches

  1. Hemoglobin (19,234 bytes)
    1: ...on=" crystallographic structure of HbII- oxy [[3P31]]" scene="Hemoglobinits/5" >
    5: <script> script /scripts/32/32/Subunits_1hho/1.spt;
    9: ...osthetic group. The <scene name='Hemoglobin/4heme/3'>heme molecules</scene> give hemoglobin its red c...
    15: ...in the β hemoglobin monomer from <scene name='32/32/Hemoglobins_1hho/9'>glutamic acid to a valine</s...
    18: ...on-2 alpha helical sandwich structure vs the 3-on-3 of other Hbs<ref>PMID:11696555</ref> .
  2. User:Alexander Grayzel/Sandbox 1 (15,974 bytes)
    2: <StructureSection load='3kx9' size='340' side='right' caption='Caption for this structu...
    5: ... of Biological Inorganic Chemistry 2016, 21 (1), 13–28.</ref> It plays a crucial role in maintaini...
    8: ...3, 19862 (2023). https://doi.org/10.1038/s41598-023-46880-9</ref> These subunits exist in two primary...
    10: ...c mechanism. Neurobiology of disease, 81, 134–143. https://doi.org/10.1016/j.nbd.2015.02.007</ref> ...
    17: ...hemistry_(Cox)/10%3A_Bioinorganic_Chemistry/10.04%3A_Iron_Storage-_Ferritin</ref> It is lined with no...
  3. User:Alexander Berchansky (31,370 bytes)
    22: ...059798320011869 http://dx.doi.org/10.1107/S2059798320011869]
    41: CRISPR type I (Cas3)
    53: CRISPR type I-F (Csy1, Csy2, Csy3) - see [[CRISPR subtype I-F]]
    83: CRISPR type V (Cpf1, C2c1, C2c3) - see [[CRISPR type V]]
    85: ...a (previously known as C2c2), Cas13b, Cas13c, Cas13d) - see [[CRISPR type VI]]
  4. User:Michael Skovbo Windahl (3,860 bytes)
    24: ...g/10.1016/j.jmb.2014.12.019 J. Mol. Biol. 427, 1263-1277].
    25: ...], [[4J3S]], [[4J3T]], [[4J3V]], [[4J3W]] and [[4J3X]].
    27: ..., (2015) [http://dx.doi.org/10.1074/jbc.M114.624163 J. Biol. Chem. 290, 2444-2454].
    29: ...ww.proteopedia.org/wiki/index.php/Journal:JBIC:10 JBIC page in Proteopediea.]
    31: ...e isoforms, (2009) [http://dx.doi.org/10.1007/s10930-009-9207-y The Protein Journal 28, 400-406.]
  5. User:Eran Hodis/Sandbox3 (431 bytes)
    1: <molshow refresh="50" size=300>
    9: scene = Journal:JBIC:3/Motif_good/5
  6. Transferases (2,490 bytes)
    1: [[Image: Methylation sites2.jpg|320px|right|thumb|Sites of Methylation by Methyltra...
    20: ** [[User:Karl E. Zahn/RB69 DNA polymerase (GP43)|DNA Polymerase Structure]]
    22: ...nylate Kinase]] - Interactive 3D Compliment for [[JBIC]]
    29: ...e Kinase 3ß]] - Interactive 3D Compliment for [[JBIC]]
    32: ** [[Phosphoinositide 3-Kinases]]
  7. User:Jaime Prilusky/Links (7,849 bytes)
    10: ***[[User:Jaime_Prilusky/Test/3jb9]] Cryo-EM structure of the yeast spliceosome
    12: ***[[User:Jaime_Prilusky/Test/3hfn]] Hfq protein from Anabaena sp.
    15: ***[[User:Jaime_Prilusky/Test/3wu2]] Photosystem II complex (21 Ligands)
    19: ***[[6w01]] [[3j3q]] large structures
    26: ...lysis]] from [https://www.chemtube3d.com/ ChemTube3D]
  8. Journal:JBIC:Working (288 bytes)
    1: ...ent_in_Proteopedia|Interactive 3D Complement]] to JBIC papers.
  9. Interactive 3D Complements in Proteopedia (7,603 bytes)
    1: ...dia_I3DC_Board|Proteopedia editor]] at any time. I3DC are [[#Protection From Editing|protected]] from...
    3: ...ns in any journal. '''List of [[Proteopedia:I3DC|I3DC pages]]''' available for open access.
    7: ==Journals Adopting I3DC==
    8: [[Image:Jbic_logo.jpg|left|120px|]]
    9: ...cal_Inorganic_Chemistry|list of I3DC articles for JBIC]].
  10. Image:JBIC 1.1.pdb (13 bytes)
    1: JBIC 1.1 Jmol
  11. Image:Ak zn 2xb4.pdb (12 bytes)
    1: JBIC 1. Zinc
  12. Image:Ak fe 3l0p.pdb (10 bytes)
    1: JBIC 1. Fe
  13. Image:Only GSK3 plus inhibitor.pdb (11 bytes)
    1: JBIC 2 file
  14. User:David Canner/Sandbox Exciting News (1,351 bytes)
    12: ... [http://onlinelibrary.wiley.com/doi/10.1002/bmb.v38:5/issuetoc Sept/Oct edition of BAMBED].<br/>
    15: [[Image:JBIC.jpg|50px|right]]
    16: ...nd [[Journal:JBIC:2|the second]] such Interactive 3D Complements.
  15. User:Jaime Prilusky/Sandbox molshow (3,617 bytes)
    1: <Structure load='' size='350' frame='true' align='right' caption='Insert cap...
    3: <molshow refresh="5" size=300>
    5: scene =Sandbox_Reserved_362/Basic/1
    6: caption=Sandbox_Reserved_362/Basic
    8: scene=Sandbox_Reserved_354/Bonds/1
  16. Ribozyme (1,825 bytes)
    1: ...e='right' caption='Hammerhead ribozyme, (PDB-ID [[379d]])'>
    5: ...zyme see [[Student Projects for UMass Chemistry 423 Spring 2012-10]].<br />
    7: ...catalyzes its own selfish splicing<ref>PMID:2197983</ref>.
    18: *[[Journal:JBIC:24|Human CPEB3 ribozyme's P4 domain]]
    36: == 3D Structures of Ribozymes ==
  17. Sandbox Reserved 760 (17,273 bytes)
    5: ...C' size='500' frame='true' align='right' caption='3D image of Nitrogenase containing both Fe protein ...
    8: ...en fixation, the reduction of atmospheric N2 to NH3 by nitrogen fixing organism, is a key step in the...
    9: ...nitrogen (N2) from the atmosphere into ammonia (NH3). This enzyme is only found in prokaryotic organi...
    11: ...wing reaction: N2 + 8H+ + 16MgATP + 8e− → 2 NH3 + H2 + 16MgADP + 16Pi.
    14: ...., Nitrogenases. (1991) J. Biol. Chem. 266,9339-9342. </ref>
  18. Peptidyl-prolyl cis-trans isomerase (2,222 bytes)
    1: <StructureSection load='' size='350' side='right' caption='Human PPIase (green) com...
    5: ...o-serine/threonine proline motifs<ref>PMID:24173213</ref>. The deregulation of Pin1 may be involved ...
    7: ...ion of macrophages by some parasites<ref>PMID:1379319</ref>.<br />
    9: ... domain which acts as a chaperone<ref>PMID:22735173</ref>.<br />
    15: • [[Journal:JBIC:14|Multifaceted SlyD from Helicobacter pylori: im...
  19. Proteopedia:Featured JRN/0 (939 bytes)
    4: Image:Anim_Journal-JBIC-2_Hydrophobic_interactions.gif|center
    5: default [[Journal:JBIC:2]]
    8: ...andwich Complex Bound to Glycogen Synthase Kinase 3ß'''<br>
    10: ...omplex bound to glycogen synthase kinase 3ß (GSK-3ß) reveals that the inhibitor binds to the ATP bi...
    12: >>> [[Journal:JBIC:2|Visit this I3DC complement]] >>>
  20. Image:Anim Journal-JBIC-2 Hydrophobic interactions.gif (106 bytes)
    2: animated image from Journal-JBIC-2_Hydrophobic_interactions
    4: {{cc-by-sa-3.0}}

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