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- Image:Jbic logo.jpg (24 bytes)
- Journal:JBIC:18 (3,745 bytes)
1: ...on load='' size='450' side='right' scene='Journal:JBIC:18/Cv/1' caption=''>
2: ...= Solution structure and dynamics of human S100A14 ===
6: ...ene name='Journal:JBIC:18/Cv/5'>homodimeric S100A14</scene> (<span style="color:mediumslateblue;backg...
8: ...ormation corresponds to holo S100A16 (A16). S100A14 (open star) is in a ‘semi-open’ conformation ...
10: ...Cv/6'>helix I (Phe-29) and helix IV (Phe-81, Phe-84, Trp-85)</scene> stabilize the interhelical orien... - Journal:JBIC:19 (4,106 bytes)
1: ...on load='' size='450' side='right' scene='Journal:JBIC:19/Cv/3' caption=''>
2: === Heterometallic [AgFe<sub>3</sub>S<sub>4</sub>] ferredoxin variants – synthesis, charact...
6: ...was determined to 1.95 Å resolution (PBD entry [[4dhv]]), being the first reported structure of an e...
7: ... However, the S – Ag – S <scene name='Journal:JBIC:19/Cv/13'>bond angles</scene> are still close to ...
9: ...c cluster was determined to 1.95 Å resolution, [[4dhv]]. - Journal:JBIC:20 (2,595 bytes)
1: ...on load='' size='450' side='right' scene='Journal:JBIC:20/Cv/2' caption=''>
4: ...sz Berlicki, and Stefano Ciurli</big> <ref>pmid 23412551 </ref>
7: ...t with Ni and OH are in darkmagenta, of note, His249, His139, and Kcx220<ref>Kcx - Lysine NZ-carboxyl...
9: ...rcina pasteurii urease in complex with citrate, [[4ac7]] - Journal:JBIC:31 (3,075 bytes)
1: <StructureSection load='' size='450' side='right' scene='69/696899/Cv/1' caption=''...
6: ...9/Cv/3'>Each monomer of the SFCP dimer folds as a 4-alpha-helical bundle</scene> in a similar manner ...
7: * <scene name='69/696899/Cv/4'>Heme group and its environment in as-isolated SF...
11: ...:black;font-weight:bold;">SFCP (in green</span>;[[4ulv]]), <font color='magenta'><b>RCCP (''R. capsul...
12: * <scene name='69/696899/Cv/14'>Click here to see morph of this scene</scene>. - Journal:JBIC:Working (288 bytes)
1: ...ent_in_Proteopedia|Interactive 3D Complement]] to JBIC papers. - Journal:JBIC:1 (3,849 bytes)
1: ..."" frame="true" spin="on" Scene ="Journal:JBIC:1/Jbic1_opening/2" side="right" caption="Crystal structu...
7: ...(ATP:AMP phosphotransferase, [[EC Number|EC]] 2.7.4.3; AK) is an essential catalyst for cellular grow...
10: ...Co-AK</scene> ([[3l0s]]) and <scene name='Journal:JBIC:1/Fe_bound/8'>Fe2+, Fe-AK</scene> ([[3l0p]]) boun...
11: ...="color:#FF0000">G</span>-<span style="color:#FF8040">X</span>-<span style="color:#FFFF00">X</span>-<...
13: ...enylate kinase from ''Desulfovibrio gigas'', [[2xb4]]; Crystal structure of Iron containing Adenylate... - Journal:JBIC:2 (2,050 bytes)
1: ...size='350' side='right' caption='' scene='Journal:JBIC:2/Opening/1'>
6: ...th <scene name='Journal:JBIC:2/Glycine_rich_loop2/4'>the flexible glycine-rich loop</scene>. Although... - Image:JBIC 1.1.pdb (13 bytes)
1: JBIC 1.1 Jmol - Sandbox 1 JBIC (3,572 bytes)
1: ..."" frame="true" spin="on" Scene ="Journal:JBIC:1/Jbic1_opening/2" align="right" caption="Crystal struct...
5: ...sp; ('''[http://www.ncbi.nlm.nih.gov/pubmed/20821240 Abstract]''')
9: ...nylate kinase (ATP:AMP phosphotransferase, EC 2.7.4.3; AK) is an essential catalyst for cellular grow...
12: ...ed by X-ray crystallography. <scene name='Journal:JBIC:1/Super/10'>All three crystal structures are very...
15: ...="color:#FF0000">G</span>-<span style="color:#FF8040">X</span>-<span style="color:#FFFF00">X</span>-<... - Journal:JBIC:4 (2,944 bytes)
1: ...ure of Ferrochelatase Mutant' scene='Journal:JBIC:4/Heme_bound_ferro_open/3'>
3: ...ats Hansson</big><ref>DOI 10.1007/s00775-010-0720-4</ref>
7: ...e> how a <scene name='Journal:JBIC:4/Bound_cu_por/4'>copper in a reaction product (copper-mesoporphyr...
9: ...ces:''' ''Bacillus subtilis'' ferrochelatase, [[3m4z]]; Crystal structure of the Tyr13Met variant of ... - Journal:JBIC:0 (204 bytes)
1: <StructureSection load='' size='450' side='right' scene='' caption=''> - Journal:JBIC:3 (3,108 bytes)
1: ...tion='Solved Structure of S100A16' scene='Journal:JBIC:3/Calcium_binding_start/7'>
6: ...d helix</scene> are the most <scene name='Journal:JBIC:3/Flexible_broad/3'>flexible regions in both the ... - Journal:JBIC:5 (4,665 bytes)
1: <StructureSection size="450" scene ="Journal:JBIC:5/Opening/2" caption="Solved Crystal Structure of...
6: ...ing Co(II) for Fe(II) in the <scene name='Journal:JBIC:5/Cobalt_overview/1'>Homoprotocatechuate 2,3-diox...
8: ...f the active site residues in<scene name='Journal:JBIC:5/Substrate_overlay/16'> the 1st or 2nd coordinat...
10: ...moprotocatechuate 2,3-Dioxygenase in complex with 4-nitrocatechol at 1.68 Ang resolution, [[3ojk]]; S... - Journal:JBIC:6 (3,666 bytes)
1: <StructureSection size="450" scene ="Journal:JBIC:6/Opening/5" caption="Solved Crystal Structures o...
6: ...g/7'>Sco domains</scene> and <scene name='Journal:JBIC:6/Cyt_c_openin/1'>cyt c</scene>, separately expre...
8: ...and the conserved His region <scene name='Journal:JBIC:6/Cu_eukaryotic_cxxxc_hydro_in/1'>freeze the copp...
10: ...f pp3183 protein from ''Pseudomonas putida'', [[2l4d]]. - Journal:JBIC:7 (3,695 bytes)
1: ... color="" frame="true" spin="on" Scene ="Journal:JBIC:7/Cv/2" side="right" caption="Cytochrome c6">
6: ... determined and all have the <scene name='Journal:JBIC:7/Cv/7'>methionine ligand coordinating to the iro...
8: ... alpha helix</scene> and the <scene name='Journal:JBIC:7/Cv/21'>displacement of two loop regions</scene>...
10: ...ediate that is stabilised by <scene name='Journal:JBIC:7/Cv/15'>imidazole binding to the vacant heme iro... - Journal:JBIC:8 (4,944 bytes)
1: ...Jbic8.pdb' size='450' side='right' scene='Journal:JBIC:8/Cv/1' caption=''>
6: ...ecies</scene>. Hbs transport <scene name='Journal:JBIC:8/Rabbit_hb/5'>oxygen</scene> in the red blood ce...
8: <scene name='Journal:JBIC:8/Trhb/1'>Truncated hemoglobins</scene>, also kno...
12: ...BIC:8/Trhb/4'>Tyr25 was hydrogen-bonded to the Gln46 and Gln50 (E11) residues</scene>.
14: ...lues are similar to those of <scene name='Journal:JBIC:8/Hbn/3'>HbN from Mycobacterium tuberculosis</sce... - Journal:JBIC:9 (3,634 bytes)
1: ...ic91a.pdb' size='450' side='right' scene='Journal:JBIC:9/Cv/18' caption=''>
6: ...oforms</scene> revealed that <scene name='Journal:JBIC:9/Cv2/3'>only small structural adaptations were n... - Journal:JBIC:10 (3,536 bytes)
1: ...oad='2z8q' size='450' side='right' scene='Journal:JBIC:10/Cv1/2' caption=''>
2: ...rococcus furiosus'' ferredoxin: [4Fe-4S] <-> [3Fe-4S] cluster conversion ===
6: ...single conformation</scene> (<scene name='Journal:JBIC:10/Cv1/11'>click to see morph</scene>, molecule A...
8: ...300px|thumb|pH dependent equilibrium of D14C [3Fe-4S] ''P. furiosus'' ferredoxin between protonated a...
10: ... and <scene name='Journal:JBIC:10/Cv2/10'>WT [3Fe-4S]</scene>). - Journal:JBIC:11 (3,578 bytes)
1: ...Jb11b.pdb' size='450' side='right' scene='Journal:JBIC:11/Cv/2' caption=''>
8: ...the peroxide binding site</scene>. Movement of E114 upon oxidation of the all-ferrous diiron center t...
9: ...ne> also reveals <scene name='Journal:JBIC:11/Exp/4'>small srtuctural changes</scene> ([[3qvd]]). Bot...
11: [[Image:Xc.PNG|left|400px|thumb|Reaction scheme for rubrerythrins.]]
Page text matches
- Hemoglobin (19,234 bytes)
9: ...ne> prosthetic group. The <scene name='Hemoglobin/4heme/3'>heme molecules</scene> give hemoglobin its...
11: ...hows how the <scene name='Hemoglobin/Oxysubunitsf/4'>oxygenated heme group is held</scene> within the...
16: ...l tissue and contains 109 residues<ref>PMID:9642264</ref> .
17: ...iosis with sulfur-oxidizing bacteria<ref>PMID:16204001</ref> .
18: ...bin''' found in bacteria and plants. They are 20-40 residues shorter than other Hb and have 2-on-2 a... - User:Alexander Grayzel/Sandbox 1 (15,974 bytes)
2: <StructureSection load='3kx9' size='340' side='right' caption='Caption for this structur...
5: ...ng iron when needed. Its ability to contain up to 4,500 iron atoms within a spherical protein shell p...
8: ... 19862 (2023). https://doi.org/10.1038/s41598-023-46880-9</ref> These subunits exist in two primary f...
10: ...ic mechanism. Neurobiology of disease, 81, 134–143. https://doi.org/10.1016/j.nbd.2015.02.007</ref>...
17: ..._Chemistry_(Cox)/10%3A_Bioinorganic_Chemistry/10.04%3A_Iron_Storage-_Ferritin</ref> It is lined with ... - User:Alexander Berchansky (31,370 bytes)
55: CRISPR type I-U (GSU0054)
79: CRISPR type II-B (Cas4)
87: ... of a divalent metal ion to a novel and versatile 4D motif]]
88: *[[Journal:IUCrJ:S2052252521005340|X-ray crystallography studies of RoAb13 bound to...
90: *[[Journal:Acta Cryst D:S2059798320015004|The substrate binding in the bile acid transporte... - User:Michael Skovbo Windahl (3,860 bytes)
16: ...f Chemistry], Technical University of Denmark, 2004. <br/>
24: ...x.doi.org/10.1016/j.jmb.2014.12.019 J. Mol. Biol. 427, 1263-1277].
25: ...U]], [[4J3S]], [[4J3T]], [[4J3V]], [[4J3W]] and [[4J3X]].
27: ....1074/jbc.M114.624163 J. Biol. Chem. 290, 2444-2454].
29: ...ww.proteopedia.org/wiki/index.php/Journal:JBIC:10 JBIC page in Proteopediea.] - User:Eran Hodis/Sandbox3 (431 bytes)
9: scene = Journal:JBIC:3/Motif_good/5 - Transferases (2,490 bytes)
20: ** [[User:Karl E. Zahn/RB69 DNA polymerase (GP43)|DNA Polymerase Structure]]
22: ...nylate Kinase]] - Interactive 3D Compliment for [[JBIC]]
25: ** [[Cyclin Dependent Kinase-4]]
29: ...e Kinase 3ß]] - Interactive 3D Compliment for [[JBIC]] - User:Jaime Prilusky/Links (7,849 bytes)
13: ***[[User:Jaime_Prilusky/Test/4enl]] Holoenzime (Consurf)
14: ***[[User:Jaime_Prilusky/Test/4v99]] Panicum Mosaic Virus
53: *** [http://size43.com/jqueryVideoTool.html Aspect Ratio Calculator...
86: ***[[User:Jaime_Prilusky/Test/1sva]] SIMIAN VIRUS 40
87: ***[[User:Jaime_Prilusky/Test/3usb]] 4 Residues - Journal:JBIC:Working (288 bytes)
1: ...ent_in_Proteopedia|Interactive 3D Complement]] to JBIC papers. - Interactive 3D Complements in Proteopedia (7,603 bytes)
8: [[Image:Jbic_logo.jpg|left|120px|]]
9: ...cal_Inorganic_Chemistry|list of I3DC articles for JBIC]].
19: ...rker ''et al.'', ''BMC Biology'' <ref>PMID:29078764</ref>, see [[Samatey/5]].
21: ...ications''<ref>PMID:27811912</ref>, see [[Samatey/4]].
22: ...'et al.'', ''Scientific Reports''<ref>PMID: 27759043</ref>, see [[Samatey/3]]. - Image:JBIC 1.1.pdb (13 bytes)
1: JBIC 1.1 Jmol - Image:Ak zn 2xb4.pdb (12 bytes)
1: JBIC 1. Zinc - Image:Ak fe 3l0p.pdb (10 bytes)
1: JBIC 1. Fe - Image:Only GSK3 plus inhibitor.pdb (11 bytes)
1: JBIC 2 file - User:David Canner/Sandbox Exciting News (1,351 bytes)
8: ...[http://www.f1000scientist.com/article/display/57649/ 2010 The Scientist "Best Science Website" Labby...
15: [[Image:JBIC.jpg|50px|right]]
16: ...s. See [[Journal:JBIC:1|the first]] and [[Journal:JBIC:2|the second]] such Interactive 3D Complements. - User:Jaime Prilusky/Sandbox molshow (3,617 bytes)
2: 2c1z <scene name='42/425176/2c1z/2'>evolutionary conservation</scene> ba...
8: scene=Sandbox_Reserved_354/Bonds/1
9: caption=Sandbox_Reserved_354/Bonds
25: scene = Journal:JBIC:3/Motif_good/5 - Ribozyme (1,825 bytes)
3: ...e which catalyzes a chemical reaction<ref>PMID:9224568</ref>.<br />
5: ...adzyme see [[Student Projects for UMass Chemistry 423 Spring 2012-10]].<br />
6: ...''' are named based on their shape<ref>PMID:9849614</ref>.<br />
8: ...istol''' <ref>PMID:24240507</ref><ref>PMID:26167874 </ref>.
18: *[[Journal:JBIC:24|Human CPEB3 ribozyme's P4 domain]] - Sandbox Reserved 760 (17,273 bytes)
2: {{User:Michael_B._Goshe/Template_BCH455_555}}
8: ...ochemical puzzle. (2005) J. Bacteriol. 187, 404-414. </ref>
14: ..., Nitrogenases. (1991) J. Biol. Chem. 266,9339-9342. </ref>
15: ..., Nitrogenases. (1991) J. Biol. Chem. 266,9339-9342. </ref>
27: ...'': Fe protein: 289 residues,FeMo protein: alpha: 492 residues and beta: 523 residues - Peptidyl-prolyl cis-trans isomerase (2,222 bytes)
1: ...de (magenta) (PDB code [[1f8a]]).' scene='67/677404/Cv/1'>
5: ...phospho-serine/threonine proline motifs<ref>PMID:24173213</ref>. The deregulation of Pin1 may be inv...
15: • [[Journal:JBIC:14|Multifaceted SlyD from Helicobacter pylori: impli...
21: ...ef>PMID:10922246</ref>. <scene name='67/677404/Cv/4'>The phosphoserine containing peptide binding sit... - Proteopedia:Featured JRN/0 (939 bytes)
4: Image:Anim_Journal-JBIC-2_Hydrophobic_interactions.gif|center
5: default [[Journal:JBIC:2]]
12: >>> [[Journal:JBIC:2|Visit this I3DC complement]] >>> - Image:Anim Journal-JBIC-2 Hydrophobic interactions.gif (106 bytes)
2: animated image from Journal-JBIC-2_Hydrophobic_interactions
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