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- Image:Jbic logo.jpg (24 bytes)
- Journal:JBIC:18 (3,745 bytes)
1: ...on load='' size='450' side='right' scene='Journal:JBIC:18/Cv/1' caption=''>
6: ...4. The solution structure of <scene name='Journal:JBIC:18/Cv/5'>homodimeric S100A14</scene> (<span style...
8: ...losed conformation corresponds to holo S100A16 (A16). S100A14 (open star) is in a ‘semi-open’ con...
10: ...matic residues in <scene name='Journal:JBIC:18/Cv/6'>helix I (Phe-29) and helix IV (Phe-81, Phe-84, T...
11: ...:18/Cv/2'>S100A14</scene> is <scene name='Journal:JBIC:18/Cv/7'>permanently activated and it is not calc... - Journal:JBIC:19 (4,106 bytes)
1: ...on load='' size='450' side='right' scene='Journal:JBIC:19/Cv/3' caption=''>
3: ...ans Erik Mølager Christensen</big><ref >pmid 23296387 </ref>
7: ... However, the S – Ag – S <scene name='Journal:JBIC:19/Cv/13'>bond angles</scene> are still close to ... - Journal:JBIC:20 (2,595 bytes)
1: ...on load='' size='450' side='right' scene='Journal:JBIC:20/Cv/2' caption=''>
7: ...te are in yellow</span>. The <scene name='Journal:JBIC:20/Cv/9'>citrate ligand has a significantly exten... - Journal:JBIC:31 (3,075 bytes)
1: ...ction load='' size='450' side='right' scene='69/696899/Cv/1' caption=''>
6: ...">heme group in yellow</span>). <scene name='69/696899/Cv/3'>Each monomer of the SFCP dimer folds as ...
7: * <scene name='69/696899/Cv/4'>Heme group and its environment in as-iso...
8: * <scene name='69/696899/Cv/5'>Proximal NO complex of SFCP (monomer A)<...
9: * <scene name='69/696899/Cv/8'>Click here to see the difference between... - Journal:JBIC:Working (288 bytes)
1: ...ent_in_Proteopedia|Interactive 3D Complement]] to JBIC papers. - Journal:JBIC:1 (3,849 bytes)
1: ..."" frame="true" spin="on" Scene ="Journal:JBIC:1/Jbic1_opening/2" side="right" caption="Crystal structu...
7: ...+AMP with high energy turnover: Mg2+ATP + AMP↔Mg2+ADP + ADP.
10: ...Co-AK</scene> ([[3l0s]]) and <scene name='Journal:JBIC:1/Fe_bound/8'>Fe2+, Fe-AK</scene> ([[3l0p]]) boun...
11: ...y structure of the enzyme. A <scene name='Journal:JBIC:1/Walker/4'>Walker motif</scene> with conserved s... - Journal:JBIC:2 (2,050 bytes)
1: ...size='350' side='right' caption='' scene='Journal:JBIC:2/Opening/1'>
3: ...zo, E. Meggers</big> <ref>DOI 10.1007/s00775-010-0699-x</ref>
6: ...and to interact tightly with <scene name='Journal:JBIC:2/Glycine_rich_loop2/4'>the flexible glycine-rich... - Image:JBIC 1.1.pdb (13 bytes)
1: JBIC 1.1 Jmol - Sandbox 1 JBIC (3,572 bytes)
1: ..."" frame="true" spin="on" Scene ="Journal:JBIC:1/Jbic1_opening/2" align="right" caption="Crystal struct...
9: ...+AMP with high energy turnover: Mg2+ATP + AMP↔Mg2+ADP + ADP.
12: ...ed by X-ray crystallography. <scene name='Journal:JBIC:1/Super/10'>All three crystal structures are very...
15: ...y structure of the enzyme. A <scene name='Journal:JBIC:1/Walker/4'>Walker motif</scene> with conserved s... - Journal:JBIC:4 (2,944 bytes)
1: ...tructure of Ferrochelatase Mutant' scene='Journal:JBIC:4/Heme_bound_ferro_open/3'>
7: ...5'>other shows</scene> how a <scene name='Journal:JBIC:4/Bound_cu_por/4'>copper in a reaction product (c... - Journal:JBIC:0 (204 bytes)
- Journal:JBIC:3 (3,108 bytes)
1: ...tion='Solved Structure of S100A16' scene='Journal:JBIC:3/Calcium_binding_start/7'>
2: === Structural characterization of human S100A16, a low-affinity calcium binder ===
6: ...scene>. Although the biological function of S100A16 is still unclear yet, these structural and dynami...
8: ...S100A16 [[2l51]]; Solution structure of apo S100A16 [[2l50]]. - Journal:JBIC:5 (4,665 bytes)
1: <StructureSection size="450" scene ="Journal:JBIC:5/Opening/2" caption="Solved Crystal Structure of...
6: ...ing Co(II) for Fe(II) in the <scene name='Journal:JBIC:5/Cobalt_overview/1'>Homoprotocatechuate 2,3-diox...
8: ... in<scene name='Journal:JBIC:5/Substrate_overlay/16'> the 1st or 2nd coordination sphere environment<...
10: ...stituted Homoprotocatechuate 2,3-Dioxygenase at 1.65 Ang resolution, [[3ojn]]; Structure of native Fe... - Journal:JBIC:6 (3,666 bytes)
1: <StructureSection size="450" scene ="Journal:JBIC:6/Opening/5" caption="Solved Crystal Structures of ...
6: ...Sco domains</scene> and <scene name='Journal:JBIC:6/Cyt_c_openin/1'>cyt c</scene>, separately express...
8: ...he conserved His region <scene name='Journal:JBIC:6/Cu_eukaryotic_cxxxc_hydro_in/1'>freeze the copper... - Journal:JBIC:7 (3,695 bytes)
1: ...al:JBIC:7/Cv/2" side="right" caption="Cytochrome c6">
2: ...idazole binding to two members of the cytochrome c6 family reveal an important role for a conserved h...
6: ...point redox potential in the cytochrome ''c''<sub>6</sub> family. The '''Q51V''' variant has been sho...
8: ... alpha helix</scene> and the <scene name='Journal:JBIC:7/Cv/21'>displacement of two loop regions</scene>...
10: ...ediate that is stabilised by <scene name='Journal:JBIC:7/Cv/15'>imidazole binding to the vacant heme iro... - Journal:JBIC:8 (4,944 bytes)
1: ...Jbic8.pdb' size='450' side='right' scene='Journal:JBIC:8/Cv/1' caption=''>
3: ...Ariki Matsuoka</big><ref>DOI 10.1007/s00775-011-0761-3</ref>
6: ...ecies</scene>. Hbs transport <scene name='Journal:JBIC:8/Rabbit_hb/5'>oxygen</scene> in the red blood ce...
8: <scene name='Journal:JBIC:8/Trhb/1'>Truncated hemoglobins</scene>, also kno...
12: ...IC:8/Trhb/4'>Tyr25 was hydrogen-bonded to the Gln46 and Gln50 (E11) residues</scene>. - Journal:JBIC:9 (3,634 bytes)
1: ...ic91a.pdb' size='450' side='right' scene='Journal:JBIC:9/Cv/18' caption=''>
6: ...oforms</scene> revealed that <scene name='Journal:JBIC:9/Cv2/3'>only small structural adaptations were n...
8: '''PDB references:''' [[2l61]], [[2l62]] - Journal:JBIC:10 (3,536 bytes)
1: ...oad='2z8q' size='450' side='right' scene='Journal:JBIC:10/Cv1/2' caption=''>
6: ...single conformation</scene> (<scene name='Journal:JBIC:10/Cv1/11'>click to see morph</scene>, molecule A...
10: ...'>D14C [3Fe-4S]</scene>) and <scene name='Journal:JBIC:10/Cv2/10'>WT [3Fe-4S]</scene>). - Journal:JBIC:11 (3,578 bytes)
1: ...Jb11b.pdb' size='450' side='right' scene='Journal:JBIC:11/Cv/2' caption=''>
3: ... Lanzilotta</big><ref>DOI 10.1007/s00775-011-0795-6</ref>
8: ...n)</b></font>. This exposure <scene name='Journal:JBIC:11/Cv/9'>causes significant conformational change...
9: ...plosure</scene> also reveals <scene name='Journal:JBIC:11/Exp/4'>small srtuctural changes</scene> ([[3qv...
Page text matches
- Hemoglobin (19,234 bytes)
16: ...al tissue and contains 109 residues<ref>PMID:9642264</ref> .
17: ...ymbiosis with sulfur-oxidizing bacteria<ref>PMID:16204001</ref> .
18: ...structure vs the 3-on-3 of other Hbs<ref>PMID:11696555</ref> .
19: ...the lethal disease methemoglobinemia<ref>PMID:30726002</ref> .
20: ...emoglobin''' found in roots of legumes<ref>PMID:29642729</ref> . - User:Alexander Grayzel/Sandbox 1 (15,974 bytes)
5: ...JBIC Journal of Biological Inorganic Chemistry 2016, 21 (1), 13–28.</ref> It plays a crucial role ...
8: ...19862 (2023). https://doi.org/10.1038/s41598-023-46880-9</ref> These subunits exist in two primary fo...
10: ... of disease, 81, 134–143. https://doi.org/10.1016/j.nbd.2015.02.007</ref> The H-chain posses ferrox...
17: ..., 84(4), 2256–2263. https://doi.org/10.1016/S0006-3495(03)75031-0</ref> As stated previously, the 3...
23: [[Image: 1-s2.0-S0304416510000954-gr1.jpg]] - User:Alexander Berchansky (31,370 bytes)
1: [[Image:1680.jpg|left|200px]]
22: ...20011869 http://dx.doi.org/10.1107/S2059798320011869]
89: *[[Journal:Acta Cryst F:S2053230X20016015|Using Yeast Surface Display to Engineer a Solu...
94: *[[Journal:JBIC:8|A hydrogen-bonding network formed by the B10-E7...
95: *[[Journal:JBIC:12|ISC-like [2Fe-2S] ferredoxin (FdxB) dimer from... - User:Michael Skovbo Windahl (3,860 bytes)
8: 2012-2016 Post doc [http://www.ruc.dk Roskilde University],...
24: ...rg/10.1016/j.jmb.2014.12.019 J. Mol. Biol. 427, 1263-1277].
27: ...), (2015) [http://dx.doi.org/10.1074/jbc.M114.624163 J. Biol. Chem. 290, 2444-2454].
29: ...ww.proteopedia.org/wiki/index.php/Journal:JBIC:10 JBIC page in Proteopediea.]
31: ...7/s10930-009-9207-y The Protein Journal 28, 400-406.] - User:Eran Hodis/Sandbox3 (431 bytes)
9: scene = Journal:JBIC:3/Motif_good/5 - Transferases (2,490 bytes)
8: ** [[6-deoxyerythronolide B synthase (DEBS)]]
20: ** [[User:Karl E. Zahn/RB69 DNA polymerase (GP43)|DNA Polymerase Structure]]
22: ...nylate Kinase]] - Interactive 3D Compliment for [[JBIC]]
29: ...e Kinase 3ß]] - Interactive 3D Compliment for [[JBIC]] - User:Jaime Prilusky/Links (7,849 bytes)
3: [[User:Jaime_Prilusky/JmolExtension/Extensionv6]]
8: ...eomics_and_its_Impact_on_the_Life_Sciences:6|Book:6]]
16: *** [[9n6k]] prot-dna, interesting structure
19: ***[[6w01]] [[3j3q]] large structures
20: ***[[6vxs]] [[6w02]] Ligands - Journal:JBIC:Working (288 bytes)
1: ...ent_in_Proteopedia|Interactive 3D Complement]] to JBIC papers. - Interactive 3D Complements in Proteopedia (7,603 bytes)
8: [[Image:Jbic_logo.jpg|left|120px|]]
9: ...cal_Inorganic_Chemistry|list of I3DC articles for JBIC]].
18: ...meters. Wang, Gu ''et al., Cell'' <ref>PMID:30951668</ref>, see [[Malvankar/2]].
19: ...arker ''et al.'', ''BMC Biology'' <ref>PMID:29078764</ref>, see [[Samatey/5]].
21: * 2016: Complete structure of the bacterial flagellar ho... - Image:JBIC 1.1.pdb (13 bytes)
1: JBIC 1.1 Jmol - Image:Ak zn 2xb4.pdb (12 bytes)
1: JBIC 1. Zinc - Image:Ak fe 3l0p.pdb (10 bytes)
1: JBIC 1. Fe - Image:Only GSK3 plus inhibitor.pdb (11 bytes)
1: JBIC 2 file - User:David Canner/Sandbox Exciting News (1,351 bytes)
8: ... [http://www.f1000scientist.com/article/display/57649/ 2010 The Scientist "Best Science Website" Labb...
15: [[Image:JBIC.jpg|50px|right]]
16: ...s. See [[Journal:JBIC:1|the first]] and [[Journal:JBIC:2|the second]] such Interactive 3D Complements. - User:Jaime Prilusky/Sandbox molshow (3,617 bytes)
2: 2c1z <scene name='42/425176/2c1z/2'>evolutionary conservation</scene> backbon...
5: scene =Sandbox_Reserved_362/Basic/1
6: caption=Sandbox_Reserved_362/Basic
25: scene = Journal:JBIC:3/Motif_good/5 - Ribozyme (1,825 bytes)
3: ...which catalyzes a chemical reaction<ref>PMID:9224568</ref>.<br />
4: *'''Glucosamine-6-phosphate activated RZ''' (glmS RZ) is a RZ and a...
6: ...RZ''' are named based on their shape<ref>PMID:9849614</ref>.<br />
8: ...'''Pistol''' <ref>PMID:24240507</ref><ref>PMID:26167874 </ref>.
18: *[[Journal:JBIC:24|Human CPEB3 ribozyme's P4 domain]] - Sandbox Reserved 760 (17,273 bytes)
11: ...8H+ + 16MgATP + 8e− → 2 NH3 + H2 + 16MgADP + 16Pi.
14: ...is, R. H., Nitrogenases. (1991) J. Biol. Chem. 266,9339-9342. </ref>
15: ...is, R. H., Nitrogenases. (1991) J. Biol. Chem. 266,9339-9342. </ref>
29: '''Molecular Weight''': Fe protein:63.662 KDa, FeMo protein: 235.154KDa
33: ...allography.(2004) The Chinese Academy of Science.46, 392-400. </ref> - Peptidyl-prolyl cis-trans isomerase (2,222 bytes)
1: ...peptide (magenta) (PDB code [[1f8a]]).' scene='67/677404/Cv/1'>
9: ...e SlpA''' is a 2-domain protein containing an FK506-binding domain and a PPIase domain and a small in...
13: • [[FK506 binding protein]] for SlyD<br />
15: • [[Journal:JBIC:14|Multifaceted SlyD from Helicobacter pylori: im...
18: ...d age-related macular degeneration<ref>PMID:25986561</ref>. - Proteopedia:Featured JRN/0 (939 bytes)
4: Image:Anim_Journal-JBIC-2_Hydrophobic_interactions.gif|center
5: default [[Journal:JBIC:2]]
9: ...org/10.1007/s00775-010-0699-x 10.1007/s00775-010-0699-x] <br>
12: >>> [[Journal:JBIC:2|Visit this I3DC complement]] >>> - Image:Anim Journal-JBIC-2 Hydrophobic interactions.gif (106 bytes)
2: animated image from Journal-JBIC-2_Hydrophobic_interactions
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