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  1. Image:Jbic logo.jpg (24 bytes)
  2. Journal:JBIC:18 (3,745 bytes)
    1: ...d='' size='450' side='right' scene='Journal:JBIC:18/Cv/1' caption=''>
    6: ... solution structure of <scene name='Journal:JBIC:18/Cv/5'>homodimeric S100A14</scene> (<span style="c...
    8: [[Image:JBIC18.png|left|400px|thumb|Principal component analysis...
    10: ...elix I (Phe-29) and helix IV (Phe-81, Phe-84, Trp-85)</scene> stabilize the interhelical orientation ...
    11: .../2'>S100A14</scene> is <scene name='Journal:JBIC:18/Cv/7'>permanently activated and it is not calcium...
  3. Journal:JBIC:19 (4,106 bytes)
    1: ...on load='' size='450' side='right' scene='Journal:JBIC:19/Cv/3' caption=''>
    3: ...s Erik Mølager Christensen</big><ref >pmid 23296387 </ref>
    7: ... However, the S – Ag – S <scene name='Journal:JBIC:19/Cv/13'>bond angles</scene> are still close to ...
  4. Journal:JBIC:20 (2,595 bytes)
    1: ...on load='' size='450' side='right' scene='Journal:JBIC:20/Cv/2' caption=''>
    7: ...te are in yellow</span>. The <scene name='Journal:JBIC:20/Cv/9'>citrate ligand has a significantly exten...
  5. Journal:JBIC:31 (3,075 bytes)
    1: ...tion load='' size='450' side='right' scene='69/696899/Cv/1' caption=''>
    3: .... Dobbin, Michael A. Hough</big> <ref>PMID 25792378 </ref>
    6: ...>heme group in yellow</span>). <scene name='69/696899/Cv/3'>Each monomer of the SFCP dimer folds as a...
    7: * <scene name='69/696899/Cv/4'>Heme group and its environment in as-isol...
    8: * <scene name='69/696899/Cv/5'>Proximal NO complex of SFCP (monomer A)</...
  6. Journal:JBIC:Working (288 bytes)
    1: ...ent_in_Proteopedia|Interactive 3D Complement]] to JBIC papers.
  7. Journal:JBIC:1 (3,849 bytes)
    1: ..."" frame="true" spin="on" Scene ="Journal:JBIC:1/Jbic1_opening/2" side="right" caption="Crystal structu...
    4: </big> <ref >DOI 10.1007/s00775-010-0700-8</ref>
    7: ...Mg2+AMP with high energy turnover: Mg2+ATP + AMP&#8596;Mg2+ADP + ADP.
    10: ...[3l0s]]) and <scene name='Journal:JBIC:1/Fe_bound/8'>Fe2+, Fe-AK</scene> ([[3l0p]]) bound in its LID ...
    11: ...le="color:#FF0000">G</span>-<span style="color:#FF8040">X</span>-<span style="color:#FFFF00">X</span>...
  8. Journal:JBIC:2 (2,050 bytes)
    1: ...size='350' side='right' caption='' scene='Journal:JBIC:2/Opening/1'>
    6: ...and to interact tightly with <scene name='Journal:JBIC:2/Glycine_rich_loop2/4'>the flexible glycine-rich...
  9. Image:JBIC 1.1.pdb (13 bytes)
    1: JBIC 1.1 Jmol
  10. Sandbox 1 JBIC (3,572 bytes)
    1: ..."" frame="true" spin="on" Scene ="Journal:JBIC:1/Jbic1_opening/2" align="right" caption="Crystal struct...
    4: </big> <ref >DOI 10.1007/s00775-010-0700-8</ref>
    5: &nbsp; ('''[http://www.ncbi.nlm.nih.gov/pubmed/20821240 Abstract]''')
    9: ...Mg2+AMP with high energy turnover: Mg2+ATP + AMP&#8596;Mg2+ADP + ADP.
    12: ...ed by X-ray crystallography. <scene name='Journal:JBIC:1/Super/10'>All three crystal structures are very...
  11. Journal:JBIC:4 (2,944 bytes)
    1: ...tructure of Ferrochelatase Mutant' scene='Journal:JBIC:4/Heme_bound_ferro_open/3'>
    7: ...5'>other shows</scene> how a <scene name='Journal:JBIC:4/Bound_cu_por/4'>copper in a reaction product (c...
  12. Journal:JBIC:0 (204 bytes)
  13. Journal:JBIC:3 (3,108 bytes)
    1: ...tion='Solved Structure of S100A16' scene='Journal:JBIC:3/Calcium_binding_start/7'>
    6: ...d helix</scene> are the most <scene name='Journal:JBIC:3/Flexible_broad/3'>flexible regions in both the ...
  14. Journal:JBIC:5 (4,665 bytes)
    1: <StructureSection size="450" scene ="Journal:JBIC:5/Opening/2" caption="Solved Crystal Structure of...
    6: ...ing Co(II) for Fe(II) in the <scene name='Journal:JBIC:5/Cobalt_overview/1'>Homoprotocatechuate 2,3-diox...
    8: ...f the active site residues in<scene name='Journal:JBIC:5/Substrate_overlay/16'> the 1st or 2nd coordinat...
    10: ...Dioxygenase in complex with 4-nitrocatechol at 1.68 Ang resolution, [[3ojk]]; Structure of Co-substit...
  15. Journal:JBIC:6 (3,666 bytes)
    1: <StructureSection size="450" scene ="Journal:JBIC:6/Opening/5" caption="Solved Crystal Structures o...
    6: ...g/7'>Sco domains</scene> and <scene name='Journal:JBIC:6/Cyt_c_openin/1'>cyt c</scene>, separately expre...
    8: ...and the conserved His region <scene name='Journal:JBIC:6/Cu_eukaryotic_cxxxc_hydro_in/1'>freeze the copp...
    10: '''PDB reference:''' Cytochrome c domain of pp3183 protein from ''Pseudomonas putida'', [[2l4d]].
  16. Journal:JBIC:7 (3,695 bytes)
    1: ... color="" frame="true" spin="on" Scene ="Journal:JBIC:7/Cv/2" side="right" caption="Cytochrome c6">
    3: ... A.R. Worrall</big><ref>DOI 10.1007/s00775-011-0758-y</ref>
    6: ... determined and all have the <scene name='Journal:JBIC:7/Cv/7'>methionine ligand coordinating to the iro...
    8: ... alpha helix</scene> and the <scene name='Journal:JBIC:7/Cv/21'>displacement of two loop regions</scene>...
    10: ...ediate that is stabilised by <scene name='Journal:JBIC:7/Cv/15'>imidazole binding to the vacant heme iro...
  17. Journal:JBIC:8 (4,944 bytes)
    1: ....pdb' size='450' side='right' scene='Journal:JBIC:8/Cv/1' caption=''>
    6: ...</scene>. Hbs transport <scene name='Journal:JBIC:8/Rabbit_hb/5'>oxygen</scene> in the red blood cell...
    8: <scene name='Journal:JBIC:8/Trhb/1'>Truncated hemoglobins</scene>, also known...
    12: ...ygen atom. Furthermore, <scene name='Journal:JBIC:8/Trhb/4'>Tyr25 was hydrogen-bonded to the Gln46 an...
    14: ...are similar to those of <scene name='Journal:JBIC:8/Hbn/3'>HbN from Mycobacterium tuberculosis</scene...
  18. Journal:JBIC:9 (3,634 bytes)
    1: ...size='450' side='right' scene='Journal:JBIC:9/Cv/18' caption=''>
    6: ...oforms</scene> revealed that <scene name='Journal:JBIC:9/Cv2/3'>only small structural adaptations were n...
  19. Journal:JBIC:10 (3,536 bytes)
    1: ...oad='2z8q' size='450' side='right' scene='Journal:JBIC:10/Cv1/2' caption=''>
    3: ...rnille Harris</big><ref>DOI 10.1007/s00775-011-0778-7</ref>
    6: ...single conformation</scene> (<scene name='Journal:JBIC:10/Cv1/11'>click to see morph</scene>, molecule A...
    10: ...'>D14C [3Fe-4S]</scene>) and <scene name='Journal:JBIC:10/Cv2/10'>WT [3Fe-4S]</scene>).
  20. Journal:JBIC:11 (3,578 bytes)
    1: ...Jb11b.pdb' size='450' side='right' scene='Journal:JBIC:11/Cv/2' caption=''>
    8: ...n)</b></font>. This exposure <scene name='Journal:JBIC:11/Cv/9'>causes significant conformational change...
    9: ...plosure</scene> also reveals <scene name='Journal:JBIC:11/Exp/4'>small srtuctural changes</scene> ([[3qv...

Page text matches

  1. Hemoglobin (19,234 bytes)
    11: ...ttached to the <scene name='Hemoglobin/Oxysubunit/8'>hemoglobin monomer</scene>. The spacefill view o...
    21: ...inds NO and acts in its catabolism<ref>PMID:18379989</ref> .
    30: ..., since it is residue 9 on helix F (it is residue 87 in the human α chain). The helices form an app...
    64: ...the β2 FG corner makes a large jump against Thr 38 and Thr 41 of the α1 C helix. In a closeup of t...
    71: see [[Journal:JBIC:8]]
  2. User:Alexander Grayzel/Sandbox 1 (15,974 bytes)
    5: ...iological Inorganic Chemistry 2016, 21 (1), 13–28.</ref> It plays a crucial role in maintaining ce...
    8: ...862 (2023). https://doi.org/10.1038/s41598-023-46880-9</ref> These subunits exist in two primary form...
    10: ... pathogenetic mechanism. Neurobiology of disease, 81, 134–143. https://doi.org/10.1016/j.nbd.2015.0...
    17: ... core. On the other hand, the <scene name='10/1078819/4-fold_channel_of_ferritin/2'>4-fold channels</...
    24: ...he ferritins. Biochimica et biophysica acta, 1800(8), 719–731. https://doi.org/10.1016/j.bbagen.201...
  3. User:Alexander Berchansky (31,370 bytes)
    1: [[Image:1680.jpg|left|200px]]
    22: ...320011869 http://dx.doi.org/10.1107/S2059798320011869]
    90: *[[Journal:Acta Cryst D:S2059798320015004|The substrate binding in the bile acid t...
    91: *[[Journal:Acta Cryst D:S205979832001517X|An engineered disulfide bridge traps and...
    92: *[[Journal:Acta Cryst D:S2059798321003922|Structure of the human factor VIIa/solub...
  4. User:Michael Skovbo Windahl (3,860 bytes)
    29: ...ww.proteopedia.org/wiki/index.php/Journal:JBIC:10 JBIC page in Proteopediea.]
    31: ...rg/10.1007/s10930-009-9207-y The Protein Journal 28, 400-406.]
    33: .../dx.doi.org/10.1021/bi8015263 Biochemistry 47, 12087 – 12094]. <font color='red'>See my Proteopedia...
    35: ...ase 1 in a form suitable for crystallization, (2008) [http://dx.doi.org/10.1016/j.pep.2007.10.016 Pro...
    37: .../dx.doi.org/10.1021/bi049942x Biochemistry 43, 5188-5194]. PDB entries [[1sj1]] and [[1siz]].
  5. User:Eran Hodis/Sandbox3 (431 bytes)
    9: scene = Journal:JBIC:3/Motif_good/5
  6. Transferases (2,490 bytes)
    22: ...nylate Kinase]] - Interactive 3D Compliment for [[JBIC]]
    29: ...e Kinase 3ß]] - Interactive 3D Compliment for [[JBIC]]
  7. User:Jaime Prilusky/Links (7,849 bytes)
    82: ...r]] [http://proteopedia.org/cgi-bin/SATMolstar?id=839292 SATMol*]
    105: *** [[Journal:JBIC:2|I3DC demo]] JBIC:Structure of Anticancer Ruthenium Half-Sandwich C...
  8. Journal:JBIC:Working (288 bytes)
    1: ...ent_in_Proteopedia|Interactive 3D Complement]] to JBIC papers.
  9. Interactive 3D Complements in Proteopedia (7,603 bytes)
    8: [[Image:Jbic_logo.jpg|left|120px|]]
    9: ...cal_Inorganic_Chemistry|list of I3DC articles for JBIC]].
    18: ...eters. Wang, Gu ''et al., Cell'' <ref>PMID:30951668</ref>, see [[Malvankar/2]].
    19: ... Barker ''et al.'', ''BMC Biology'' <ref>PMID:29078764</ref>, see [[Samatey/5]].
    21: ... ''et al.'', ''Nature Communications''<ref>PMID:27811912</ref>, see [[Samatey/4]].
  10. Image:JBIC 1.1.pdb (13 bytes)
    1: JBIC 1.1 Jmol
  11. Image:Ak zn 2xb4.pdb (12 bytes)
    1: JBIC 1. Zinc
  12. Image:Ak fe 3l0p.pdb (10 bytes)
    1: JBIC 1. Fe
  13. Image:Only GSK3 plus inhibitor.pdb (11 bytes)
    1: JBIC 2 file
  14. User:David Canner/Sandbox Exciting News (1,351 bytes)
    12: ...[http://onlinelibrary.wiley.com/doi/10.1002/bmb.v38:5/issuetoc Sept/Oct edition of BAMBED].<br/>
    15: [[Image:JBIC.jpg|50px|right]]
    16: ...s. See [[Journal:JBIC:1|the first]] and [[Journal:JBIC:2|the second]] such Interactive 3D Complements.
  15. User:Jaime Prilusky/Sandbox molshow (3,617 bytes)
    25: scene = Journal:JBIC:3/Motif_good/5
  16. Ribozyme (1,825 bytes)
    3: ...hich catalyzes a chemical reaction<ref>PMID:9224568</ref>.<br />
    6: ...ad RZ''' are named based on their shape<ref>PMID:9849614</ref>.<br />
    7: ... catalyzes its own selfish splicing<ref>PMID:2197983</ref>.
    8: ...'Pistol''' <ref>PMID:24240507</ref><ref>PMID:26167874 </ref>.
    18: *[[Journal:JBIC:24|Human CPEB3 ribozyme's P4 domain]]
  17. Sandbox Reserved 760 (17,273 bytes)
    8: ...enase:a biochemical puzzle. (2005) J. Bacteriol. 187, 404-414. </ref>
    11: ...yzes the following reaction: N2 + 8H+ + 16MgATP + 8e− → 2 NH3 + H2 + 16MgADP + 16Pi.
    13: ...duced in the active site of the enzyme along with 8hydrogen ions to form 2 ammonia molecules and a by...
    27: '''Length''': Fe protein: 289 residues,FeMo protein: alpha: 492 residues and b...
    69: ... Assembly. (2013) Biochemica et Biophysica Acta. 1827,1112-1122. </ref>
  18. Peptidyl-prolyl cis-trans isomerase (2,222 bytes)
    1: ...serine containing peptide (magenta) (PDB code [[1f8a]]).' scene='67/677404/Cv/1'>
    15: • [[Journal:JBIC:14|Multifaceted SlyD from Helicobacter pylori: im...
    18: ... and age-related macular degeneration<ref>PMID:25986561</ref>.
  19. Proteopedia:Featured JRN/0 (939 bytes)
    4: Image:Anim_Journal-JBIC-2_Hydrophobic_interactions.gif|center
    5: default [[Journal:JBIC:2]]
    12: >>> [[Journal:JBIC:2|Visit this I3DC complement]] >>>
  20. Image:Anim Journal-JBIC-2 Hydrophobic interactions.gif (106 bytes)
    2: animated image from Journal-JBIC-2_Hydrophobic_interactions

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