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- User:Jennifer Ashtamker (220 bytes)
1: * Full Real Name: Jennifer Ashtamker
3: * Position: Master student
5: * Institution (NO ABBREVIATIONS): Weizmann institute of science
9: * Field of Expertise or Study:Chemistry - Category:Jennifer, J.M (44 bytes)
1: List of pages with the keyword Jennifer, J.M - User:Jennifer VanAusdall/Sandbox 1 (14,031 bytes)
1: ==APC Superfamily==
3: ...he qualities of the superfamily as a whole when compared with existing hydropathy plots and other str...
5: ... nucleobase-cation-symport-1 (NCS1) family)<ref> PMID: 19031293 </ref> <br>
7: ...nes are of eukaryotic origin and have N- and C-terminal hydrophilic extensions.<br>
9: ...s have revealed that some proteins in this superfamily exhibit broad specificity while others respond... - User:Jennifer Muzyka (58 bytes)
1: Professor of Chemistry, Centre College, Danville, KY 40422 - User:Jennifer Ye (212 bytes)
1: * Full Real Name: Jennifer Ye - User:Jennifer Wang (232 bytes)
1: * Full Real Name:Jennifer Wang
9: * Field of Expertise or Study:Biochemistry - User:Jennifer VanAusdall (200 bytes)
1: ...he Oxbridge Honors Program. Studied one year at Cambridge University.
3: [[User:Jennifer VanAusdall/Sandbox 1|Sculpture Yard]] - User:Jennifer Boyd (218 bytes)
1: * Full Real Name: Jennifer Boyd
7: * City, State/Province, Country: Westfield, Massachusetts, USA - User:Jennifer Taylor (764 bytes)
1: *[[User:Jennifer Taylor/Sandbox 1]]
2: *[[User:Jennifer Taylor/Sandbox 2]]
3: *[[User:Jennifer Taylor/Sandbox 3]]
4: *[[User:Jennifer Taylor/Sandbox 4]]
5: *[[User:Jennifer Taylor/Sandbox 5]] - User:Jennifer Taylor/Sandbox 1 (8,906 bytes)
1: ==YxiM from ''Bacillus subtilis''==
3: ... size='340' side='right' caption='Structure of YxiM' scene=''>
7: ...one dominated by α-helices</scene>, and <scene name='78/787191/2o14_beta/1'>one by β-sheets</scene>...
11: ...unctionally similar to those proteins that have similar sequences and structures.
13: ...ure 1'''. YxiM (green) aligned with 1J00 (blue), RMSD = 2.692.]] - User:Jennifer Taylor/Sandbox 4 (14,445 bytes)
4: ...sis'', a soil bacterium in the sphingobacterial family. Its structure was characterized by the 15-yea...
6: ...ks down lipids to form fatty acids and a glycerol molecule.
11: ...ap.png|thumb|left|250px|Figure 1: Plasmid Map of pMCSG73, the expression vector for 4Q7Q.]]
13: ...presents the C-terminus. Based on this structural model, we can see that 4Q7Q is an alpha-beta superf...
15: ...4Q7Q. We found that the plasmid's open reading frame (ORF), the sequence of DNA that will be eventual... - User:Jennifer Taylor/Sandbox 3 (8,148 bytes)
3: ...'340' side='right' caption='Here is a 3D image of my Protein=''>
5: ...024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
8: ...', recombinant his-tagged protein was isolated from E. coli.
10: ...in how to use ProMOL to analyzes the structural similarities between the active sites of proteins.
13: ...ent aspects of other proteins also helped us determine our assay. - User:Jennifer Taylor/Sandbox 7 (5,224 bytes)
3: ...dbox 7'''. Click above on '''edit this page''' to modify. Be careful with the &lt; and &gt; signs.
4: ...024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
7: ...l analysis performed on BLAST, PFam, Dali, and ProMol, 4Q7Q is believed to be a lipase.
9: ...-value, indicating it is a significant structural match of 4Q7Q.
11: ...apping also indicated that 4Q7Q shares sequence homology with other GDSL-like lipases. - User:Jennifer Taylor/Sandbox 2 (5,048 bytes)
2: ...Is a Lipase. Prior to our research the only information on its characteristics was that it was poten...
4: ...ity in certain fields. In this experiment we attempt aid in the efforts of characterization and char...
6: ...sert caption here' scene='Insert optional scene name here' />
10: ...rough this approach it revealed an extremely low RMS with protein 1TAH of 0.016. We then decided to ...
14: ...to perform a Lipase Assay that used a spectrophotometry protocol. The idea was that we would expose o... - User:Jennifer Taylor/Sandbox 5 (13,494 bytes)
2: Here is a cartoon image of my protein:<scene name='78/787196/2qru_cartoon/2'>2QRU</scene>
6: ....org/science/biology/macromolecules/proteins-and-amino-acids/a/orders-of-protein-structure]
8: ...tructure, perform sequential, structural, and enzymatic analysis.
10: ...arched to find the function and classify this enzyme.
12: ==Bacterial Transformation, Protein Expression, and Protein Purificatio... - User:Jennifer Taylor/Sandbox 6 (11,659 bytes)
2: ...t 2QRU was an esterase first, and are yet to determine if it can be classified as a lipase.
5: ...e called the Protein Data Bank. In a final PSI summary published in 2017, 6920 structures had been so...
8: ...owing the molecular weight of the puri ed 2QRU from February. The ladder is in kDa. [Lane 8 – Ladde...
11: ...nt is a better representation of the structural similarity.
14: ... the solution changed over 30 sec intervals for 2 min. We repeated this using various concentrations ... - User:Jennifer Taylor/Sandbox 8 (6,502 bytes)
1: ...e='340' side='right' caption='AphB biological Assembly=''>
2: == Instructional Information ==
3: ....jpg|thumb|left|250px|Figure 1: Bacterial Transformation]]
5: ...uld be annotate it with size standards and lane numbers.]]
7: '''Adding an uploaded image into your page - User:Jennifer Taylor/Sandbox 9 MP (302 bytes)
3: <applet size='[450,338]' frame='true' align='right'
6: ...e name='80/806397/Gal4_bound_to_uas/1'>Gal4 UAS complex</scene>
9: <scene name='80/806397/P-nitrophenol/1'>p-nitrophenol</scene... - Category:Jennifer, C L (44 bytes)
1: List of pages with the keyword Jennifer, C L - Category:Jennifer CL (42 bytes)
1: List of pages with the keyword Jennifer CL
Page text matches
- Mu Opioid Receptor Bound to a Morphinan Antagonist (11,597 bytes)
1: == Introduction and Background Information ==
2: [[Image:rec.gif|thumb|right|200px|]]
3: ...nd Their Ligands." Current Topics in Medicinal Chemistry 4.1 (2004): 1-17.</ref>
4: ...phinan antagonist, cholesterol, PEG 400, sulfate, mono-oleoyl-glycerol and Cl- ion (PDB entry [[4dkl]...
7: ...ntagonist/Tm5_and_tm6_dimer_form/1'>TM5 and TM6 Dimer Interface.</scene> - User:Jennifer Ashtamker (220 bytes)
1: * Full Real Name: Jennifer Ashtamker
3: * Position: Master student
5: * Institution (NO ABBREVIATIONS): Weizmann institute of science
9: * Field of Expertise or Study:Chemistry - Category:Jennifer, J.M (44 bytes)
1: List of pages with the keyword Jennifer, J.M - User:Jennifer Ye (212 bytes)
1: * Full Real Name: Jennifer Ye - User:Jeremy Zucker (8,647 bytes)
1: ...ntation, integration, modeling, and simulation of metabolic pathways since 2002.
2: ... Markup Language, and BioPAX level 1 to represent metabolic pathways in the web ontology language (O...
4: ...Molecular Systems Biology paper\cite{Feist2008Genome}.
6: ...occus pneumonia, Clostridium phytofermentans, and M. tuberculosis.
8: ...ethod to integrate expression data with metabolic models to constrain the feasible space of possible ... - User:Tsung-Yi Lin/Sandbox (6,119 bytes)
3: ...tion of [http://en.wikipedia.org/wiki/HIV human immunodeficiency virus (HIV)].
5: ...aves an [http://en.wikipedia.org/wiki/HIV human immunodeficiency virus (HIV)] precursor proteins, suc...
6: ...ikipedia.org/wiki/Gp160#gp120 Gp120] protrudes from the surface of HIV and binds to CD4+ T cells and ...
7: ...virion] by cleaving proteins into their mature form.
9: ... progressing. Thus, many drug designs or much pharmaceutical research conduct by understanding the st... - User:Jennifer Wang (232 bytes)
1: * Full Real Name:Jennifer Wang
9: * Field of Expertise or Study:Biochemistry - User:Lori Wetmore (553 bytes)
1: ...y research focuses on cell death mechanisms in mammalian cells.
2: *[[User:Lori Wetmore/Sandbox 1|tutorial practice page]]
3: *[[User:Lori Wetmore/Sandbox 4|Joe's page]]
4: *[[User:Lori Wetmore/Sandbox 3|Jenna's page]]
5: *[[User:Lori Wetmore/Sandbox 5|Jennifer's page]] - User:Jennifer VanAusdall (200 bytes)
1: ...he Oxbridge Honors Program. Studied one year at Cambridge University.
3: [[User:Jennifer VanAusdall/Sandbox 1|Sculpture Yard]] - Cholera toxin (5,937 bytes)
1: ...mposed of A1 (grey), A2 (pink) subunit and a pentamer of B subunits (rust, cyan, gold, yellow, purple...
3: ...face. CTX is the main cause of the diarrhea symptoms of cholera infection.
6: [[Image:CTX interaction.PNG|left|270px|thumb| Interaction of 7 chains of Cholera toxin [[1xtc...
8: ...ref>,<ref>Jennifer McDowall, Cholera Toxin, EMBL-EMI, Interpro</ref>.
9: ... cell surface, it is internalized, and its CTA1 domain binds to ADP-ribosylation factor 6(Arf6)[http:... - Sandbox207 (10,993 bytes)
1: This page is reserved for a work from two students in ESBS (A.Butet and E.Rosati)
13: ...rom. [http://www.rndsystems.com/cb_detail_objectname_SU05_CReactiveProtein.aspx <1>]
15: ...ttp://biology.kenyon.edu/BMB/Chime2/2005/Jenny/FRAMES/ <2>]
20: ...://news.sciencemag.org/sciencenow/2009/06/30-02.html <6>]]]
22: ===Gene structure, family=== - UMass Chem 423 Student Projects 2011-1 (31,288 bytes)
1: ...Chem423 Team Projects: Understanding Drug Mechanisms'''
2: ...ions posted here: [[Student Projects for UMass Chemistry 423 Spring 2011]]
8: Andy Kim, Zach Brentzel, Tyler Vlass, Zach Hitzig -- [[#Ac...
17: ...hange that occurs in the G-protein on the cytoplasmic side of the cell, due to the binding of a ligan...
19: ...n of cAMP molecules, the effect of the signal is amplified within the cell. - Journal:JBSD:27 (6,502 bytes)
2: ...omain are determinant in maintaining TWIST1-DNA complexes ===
3: ...rd, Raphael Terreux, Jennifer Hope, Julie Anne Chemelle, Alain Puisieux, Stéphane Ansieau, Lea Payen...
5: <b>Molecular Tour</b><br>
6: ...were established and also subjected to dynamics simulations.
7: ...f residues within the T-loop and E-loop of bHLH domains are visualized in orange, while DNA is repres... - Cas9 (9,394 bytes)
1: ...n the invading DNA during an adaptive bacterial immune response.
5: ...tated by the inclusion of additional engineered components, the targeted site either is disrupted or ...
7: [[Image:Layout for schematic and structure with structure.png|660px]]
11: ...n>https://www.youtube.com/embed/TdBAHexVYzc</html5media></center>
12: ...te [http://rna.berkeley.edu/ Jennifer Doudna], from UC Berkeley, is one of the co-inventors of the gr... - User:Jennifer Boyd (218 bytes)
1: * Full Real Name: Jennifer Boyd
7: * City, State/Province, Country: Westfield, Massachusetts, USA - Μ Opioid Receptors (6,783 bytes)
1: ...DB code [[4dkl]])' scene='Insert optional scene name here' />
5: ...variants of the human μ opioid receptor gene, Oprm. Neuroscience V133.1 August 2005.</ref>
6: ...variants of the human μ opioid receptor gene, Oprm. Neuroscience V133.1 August 2005.</ref>.
11: ...ptor bound to a morphinan antagonist. Nature V485 May 2012 </ref>.
12: ...nteractions and to then go on to design safer and more effective drugs for those in pain or with addi... - User:Jennifer Taylor (764 bytes)
1: *[[User:Jennifer Taylor/Sandbox 1]]
2: *[[User:Jennifer Taylor/Sandbox 2]]
3: *[[User:Jennifer Taylor/Sandbox 3]]
4: *[[User:Jennifer Taylor/Sandbox 4]]
5: *[[User:Jennifer Taylor/Sandbox 5]] - User:Jennifer Taylor/Sandbox 7 (5,224 bytes)
3: ...dbox 7'''. Click above on '''edit this page''' to modify. Be careful with the &lt; and &gt; signs.
4: ...024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
7: ...l analysis performed on BLAST, PFam, Dali, and ProMol, 4Q7Q is believed to be a lipase.
9: ...-value, indicating it is a significant structural match of 4Q7Q.
11: ...apping also indicated that 4Q7Q shares sequence homology with other GDSL-like lipases. - 6osj (4,550 bytes)
2: ==Cryo-EM structure of the N-terminally acetylated full length alpha-synuclein fibr...
3: <SX load='6osj' size='340' side='right' viewer='molstar' caption='[[6osj]], [[Resolution|resolution...
5: ...ents</b> use [https://proteopedia.org/fgij/fg.htm?mol=6OSJ FirstGlance]. <br>
6: .../td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.8&#8491;</t...
7: ...sj RCSB], [https://www.ebi.ac.uk/pdbsum/6osj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbc... - 6osm (4,550 bytes)
2: ...-EM structure of the N-terminally acetylated C-terminal Alpha-synuclein truncation Ac1-103==
3: ...'340' side='right' viewer='molstar' caption='[[6osm]], [[Resolution|resolution]] 3.40&Aring;' scene='...
5: ...> use [https://proteopedia.org/fgij/fg.htm?mol=6OSM FirstGlance]. <br>
6: .../td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.4&#8491;</t...
7: ...ps://prosat.h-its.org/prosat/prosatexe?pdbcode=6osm ProSAT]</span></td></tr>
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