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  1. FirstGlance in Jmol Literature Citations (30,325 bytes)
    1: ...), and all were verified to cite ''FirstGlance in Jmol''.
    3: [[FirstGlance in Jmol]] offers, since 2006, free visualization and anal...
    4: * [[FirstGlance in Jmol]]
    5: ....htm#unique Unique Capabilities of FirstGlance in Jmol]
    6: ...9100 FirstGlance YouTube Channel] [[Image:Youtube.png]]
  2. User:Jaime Prilusky/Test/Jmol versions (1,239 bytes)
    21: ...d on SAT, simply loading the same file Fig1a_6b1l.png and saving.
    23: ... Compare to rendering with the default version of Jmol (14.31.8)
    25: ...g_1a_sfx_labels_png/1'>from 008_Fig_1a_SFX_Labels.png without DORESIZE</scene>
    27: ...ame='10/1062580/Fig1a_6b1l_png/1'>from Fig1a_6b1l.png</scene>
  3. Image:Sticks jmol.png (0 bytes)
  4. Image:New Surface Bonds Jmol.png (0 bytes)
  5. Sandbox Jmol Jane (1,030 bytes)
    2: ...on='Caption for this structure' scene='10/1081074/Jmol_jane_1eve/1'>
    3: This is a default text for your page '''Sandbox Jmol Jane'''. Click above on '''edit this page''' to m...
    4: ...ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
    7: <scene name='10/1081074/Jmol_jane_1eve/1'>Jmol_Jane_1eve</scene>
  6. Image:2H5I Dimer.jmol (0 bytes)
  7. Jmol/Cavities pockets and tunnels (22,245 bytes)
    2: Jmol can find and display cavities, pockets, and tunne...
    8: ...one Jmol application]] and captured "cached" in a PNGJ file, which is then uploaded to Proteopedia for ...
    11: Jmol uses two "rolling" spherical probes to identify c...
    18: (<scene name='85/858407/6zgi_PNGJ_cavs_try2/1'>restore initial scene</scene>). It ...
    20: The simplest Jmol cavity command is
  8. Image:012 3b jmol 16 2 450 450.png (0 bytes)
  9. Image:Fig 03c jmol 14p31p8.png (0 bytes)
  10. Image:Fig 03c jmol 14p31p8 450.png (0 bytes)
  11. Image:Fig 03c jmol 14p31p8 white 450 center.png (0 bytes)
  12. Image:Fig 03a jmol 16 2 21 450 center wireframe spacefill.png (0 bytes)
  13. Image:012 2a jmol 16 3 450 450.png (0 bytes)
  14. Image:012 2c jmol 16 3 450 450.png (0 bytes)
  15. Image:012 3c jmol 14 450 450.pngj (0 bytes)
  16. Image:012 3c jmol 16 3 450 450.pngj (0 bytes)
  17. Image:2hhd jmol state test.gif (86 bytes)
    1: Snapshot of Jmol 11.5.35 from which state script was obtained, see...
  18. FirstGlance in Jmol (5,275 bytes)
    1: [[Image:Firstglance-resource-link.png|left]]
    2: ...ot of [http://firstglance.jmol.org FirstGlance in Jmol]]]
    3: ...1d66]]). FirstGlance has many [http://firstglance.jmol.org/whatis.htm#unique unique and powerful capabil...
    5: ...ly to [http://firstglance.jmol.org FirstGlance in Jmol], you can enter any [[PDB code]], or upload a [[P...
    7: ...ules tinyurl.com/movingmolecules]. FirstGlance in Jmol version 4.0 was released August 15, 2022, with ne...
  19. Jmol (17,388 bytes)
    1: ...ks]]. An overview of other Jmol resources is at [[Jmol/Index]].
    5: ...[User:Eric_Martz/JSmol_Notes#JSmol_is_slower_than_Jmol|performs much faster]], but this enhanced perform...
    14: ==Jmol Has Two Forms==
    43: Proteopedia, [[FirstGlance in Jmol]], [http://molviz.org MolviZ.Org],
    50: OBSOLETE <font color="red"><b>Jmol_S</b></font> (in web browser)
  20. User:James D Watson/Using Jmol (11,635 bytes)
    1: ==Introduction to Jmol==
    2: Jmol is a commonly used molecular graphics viewer. The...
    4: ...for you to interact with protein structures using Jmol:<UL>
    30: ...s section, we will represent selections using the Jmol menu in '''''this style'''''.<br/>
    37: ...globin molecule' scene='User:James_D_Watson/Using_Jmol/Haemoglobin_start/1'/>

Page text matches

  1. Help:Editing (24,612 bytes)
    46: ...et are in the next section below. When there is a Jmol structure applet present in the page, you create ...
    50: When there is more than one Jmol structure applet on a page, scenes automatically ...
    52: ==Proteopedia Jmol Structure Applets==
    53: ...the molecular scene. The wikitext for inserting a Jmol structure applet must be entered on the page foll...
    57: ...em are Optional). For example, this generates the Jmol structure applet on this page:
  2. Peptide (2,365 bytes)
    18: ...emoglobin Hemoglobin Tutorial] implemented with [[Jmol]] in July 2007.
  3. CHEM2052 Tutorial (6,397 bytes)
    15: ...he structure. Alternatively, you can click on the Jmol symbol in the lower right-hand corner of each ima...
    18: ...ript><text>Click this button</text></jmolButton></jmol> to flip between structures.
  4. Help:Contents (6,518 bytes)
    14: ... a window integrated into the page (often called "Jmol window"). As you read through the text of an entr...
    49: ...ails, see [[Jmol/Interactivity]]). Consult [[Help:Jmol]] for advanced 3D scenes. To look under the hood ...
  5. Proteopedia:About (7,060 bytes)
    43: ...eopedia:Team|Proteopedia team]]. The [http://wiki.jmol.org/ JSmol object] is used to render the rotatabl...
    50: ...l]] have been made what they are today by [http://jmol.sourceforge.net/history/ many dedicated volunteer...
  6. Scene authoring tools (23,035 bytes)
    6: ...T. In this case, first edit the page to include a Jmol window (using the [[Image:Structure buttons.JPG|5...
    18: ...s that someone viewing the page can load into the Jmol viewer by clicking on green links. A scene store...
    30: ..., while the right side of the user interface is a Jmol viewer to preview the scene as it is built.
    35: [[Image:Load_molecule.png|thumb|The load molecule tab in action]]
    36: ... load molecule tab is used to load molecules into Jmol.
  7. User:Karsten Theis/Linear interpolation (911 bytes)
    1: This is a Jmol script that does linear interpolation. You need t...
    18: To try it, right-click in the Jmol window to open the console, and then copy and pas...
  8. User:Karsten Theis/Rigid body interpolation (4,709 bytes)
    1: ...erform supoerpositions and to create morph, see [[Jmol/Storymorph]].
    113: ... the following three lines while running in local Jmol app
  9. User:Anna Leibinger/Sandbox 1 (11,577 bytes)
    2: ...ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the --[[User:Anna Lei...
  10. Art:Cytochrome Wallpaper (391 bytes)
    1: [[Image:1os6-551.png]]
    6: ... was generated from [[1os6]] with the following [[Jmol]] command script: <br><pre>
  11. FirstGlance in Jmol Literature Citations (30,325 bytes)
    1: ...), and all were verified to cite ''FirstGlance in Jmol''.
    3: [[FirstGlance in Jmol]] offers, since 2006, free visualization and anal...
    4: * [[FirstGlance in Jmol]]
    5: ....htm#unique Unique Capabilities of FirstGlance in Jmol]
    6: ...9100 FirstGlance YouTube Channel] [[Image:Youtube.png]]
  12. User:Wayne Decatur/UNH BCHEM833 Structural Analysis Workshop Session Fall 2012 (17,130 bytes)
    28: ...pplications_Embedding_Jmol Applications Embedding Jmol] for many more
    30: **FirstGlance in Jmol (adopted by Nature <nowiki>[</nowiki>example [htt...
    31: ....org/index.php/Journals_Using_Jmol Journals Using Jmol] for more
    74: * [[Special:Upload]] List of allowed file types: png, jpg, jpeg, tiff, tif, gif, mgif, pdb, cif, mmcif...
    87: ...oinformatics.org/firstglance/fgij/ Firstglance in Jmol].
  13. User:Chloe Tucker/Sandbox 1 (4,378 bytes)
    4: ...ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
  14. Teaching Scenes, Tutorials, and Educators' Pages (12,171 bytes)
    63: ...ludes instructions for using Jmol commands in the Jmol console for advanced scene authoring.
  15. Missing residues and incomplete sidechains (25,887 bytes)
    4: ... and [[cation-pi interactions]]. [[FirstGlance in Jmol]] makes it less likely, compared to other popular...
    22: Unlike other viewers, [[FirstGlance in Jmol]] ensures that you are aware of missing ends by m...
    29: [[Image:2ace-fg-missing-nterm.png]]
    31: [[Image:2ace-pymol-missing-nterm.png|105px]]
    33: [[Image:2ace-chimerax-missing-nterm.png|128px]]
  16. User:Jaime Prilusky/Test/Jmol versions (1,239 bytes)
    21: ...d on SAT, simply loading the same file Fig1a_6b1l.png and saving.
    23: ... Compare to rendering with the default version of Jmol (14.31.8)
    25: ...g_1a_sfx_labels_png/1'>from 008_Fig_1a_SFX_Labels.png without DORESIZE</scene>
    27: ...ame='10/1062580/Fig1a_6b1l_png/1'>from Fig1a_6b1l.png</scene>
  17. Sandbox 16p3p1 (939 bytes)
    4: ...ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
  18. User:Clara Fernández Vidal/sandbox1 (955 bytes)
    5: ...ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
  19. Sandbox Muzic (1,567 bytes)
    4: ...ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
  20. Sandbox I3DC 001 (941 bytes)
    4: ...ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.

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