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User:Robbie P. Joosten (1,247 bytes)
1: ... his doctorate in 2010. Robbie is a member of the PDB's Validation Task Force.
3: ...PhD Robbie co-developed a bioinformatics eduction project for high-school students. See www.bioinform...
Category:Joosten, R.P (43 bytes)
1: List of pages with the keyword Joosten, R.P
Category:Joosten, R P (43 bytes)
1: List of pages with the keyword Joosten, R P
Category:Joosten RP (41 bytes)
1: List of pages with the keyword Joosten RP
Category:Joosten, M (41 bytes)
1: List of pages with the keyword Joosten, M
Category:Joosten M (40 bytes)
1: List of pages with the keyword Joosten M

Page text matches

4b56 (4,959 bytes)
2: ...nucleotide pyrophosphatase-phosphodiesterase-1 (NPP1)==
3: ...ctureSection load='4b56' size='340' side='right'caption='[[4b56]], [[Resolution|resolution]] 3.00&Ari...
5: ...n the structure components use [https://proteopedia.org/fgij/fg.htm?mol=4B56 FirstGlance]. 
6: ...</tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockD...
7: ...gand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
2b8h (5,711 bytes)
3: ...ctureSection load='2b8h' size='340' side='right'caption='[[2b8h]], [[Resolution|resolution]] 2.20&Ari...
5: ...n the structure components use [https://proteopedia.org/fgij/fg.htm?mol=2B8H FirstGlance]. 
6: ...</tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockD...
7: ...N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
8: ...h-its.org/prosat/prosatexe?pdbcode=2b8h ProSAT]</td></tr>
9fxw (2,316 bytes)
2: ...Inhibitor, a Novel Class of Inhibitors with Three-Point Lock Binding Mode==
3: ...ctureSection load='9fxw' size='340' side='right'caption='[[9fxw]], [[Resolution|resolution]] 1.95&Ari...
5: ...n the structure components use [https://proteopedia.org/fgij/fg.htm?mol=9FXW FirstGlance]. 
6: ...</tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockD...
7: ...nd=SCN:THIOCYANATE+ION'>SCN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
9fxy (2,196 bytes)
2: ==Crystal Structure of Autotaxin (ENPP2) with Type IV Inhibitor==
3: ...ctureSection load='9fxy' size='340' side='right'caption='[[9fxy]], [[Resolution|resolution]] 2.00&Ari...
5: ...n the structure components use [https://proteopedia.org/fgij/fg.htm?mol=9FXY FirstGlance]. 
6: ...</tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockD...
7: ...nd=SCN:THIOCYANATE+ION'>SCN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
4b6z (4,333 bytes)
2: ... metallo-carboxypeptidase from Burkholderia cenocepacia==
3: ...ctureSection load='4b6z' size='340' side='right'caption='[[4b6z]], [[Resolution|resolution]] 1.90&Ari...
5: ...n the structure components use [https://proteopedia.org/fgij/fg.htm?mol=4B6Z FirstGlance]. 
6: ...</tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockD...
7: ...:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
3fa3 (5,176 bytes)
2: ...thylmalate lyase, a PEP mutase/isocitrate lyase superfamily member, trigonal crystal form==
3: ...ctureSection load='3fa3' size='340' side='right'caption='[[3fa3]], [[Resolution|resolution]] 2.60&Ari...
5: ...n the structure components use [https://proteopedia.org/fgij/fg.htm?mol=3FA3 FirstGlance]. 
6: ...</tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockD...
7: ...d=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=OAF:2,2-DIFLUORO-3,3-DIHYDROXYBUTANEDIOIC...
3fa4 (5,039 bytes)
2: ...thylmalate lyase, a PEP mutase/isocitrate lyase superfamily member, triclinic crystal form==
3: ...ctureSection load='3fa4' size='340' side='right'caption='[[3fa4]], [[Resolution|resolution]] 2.18&Ari...
5: ...n the structure components use [https://proteopedia.org/fgij/fg.htm?mol=3FA4 FirstGlance]. 
6: ...</tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockD...
7: ...<td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
Choline Oxidase (9,427 bytes)
1: ...77142/Cv/8' caption='Choline Oxidase complex with pteridin derivative and DMSO [[2jbv]]'>
3: ...Previous studies indicate that His466 is indeed important in the function of choline oxidase (Quaye, ...
7: ...xidase is proposed to use a flavin prosthetic group to assist in the fore-mentioned chemical reaction...
9: ...two-electron transfer reactions. Flavoenzymes are proteins that contain a nucleic acid derivative of ...
11: ...atic activity. The most probable residues were mapped.
User:Sujay Joseph/Sandbox1 Choline Oxidase (2,798 bytes)
1: ...300' frame='true' align='right' caption='Insert caption here' />== Discussion ==
2: ...ng, if not completely suppressing, the growth of pathogenic bacterial colonies.
4: ...a R, Morgulis A, Schäffer AA, and Yu YK (2005). Protein
5: database searches using compositionally adjusted substitution matrices. FEBS J...
7: ...etaines and other compatible solutes. Curr. Opin. Plant Biol. 5, 250-257
User:Robbie P. Joosten (1,247 bytes)
1: ... his doctorate in 2010. Robbie is a member of the PDB's Validation Task Force.
3: ...PhD Robbie co-developed a bioinformatics eduction project for high-school students. See www.bioinform...
PDB REDO (2,026 bytes)
1: == PDB_REDO ==
2: ...ffraction structure models. [https://pdb-redo.eu/ pdb-redo.eu]
3: [[Image:PDB REDO.png|right]]
4: === Why ''redo'' PDB files? ===
5: The goal of PDB_REDO is to provide optimised structure models for a wide
2xse (4,564 bytes)
2: ...containing DNA by a novel DNA-binding domain in JBP1==
3: ...ctureSection load='2xse' size='340' side='right'caption='[[2xse]], [[Resolution|resolution]] 1.90&Ari...
5: ...n the structure components use [https://proteopedia.org/fgij/fg.htm?mol=2XSE FirstGlance]. 
6: ...</tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockD...
7: ...d=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>
9h22 (633 bytes)
3: The entry 9h22 is ON HOLD until Paper Publication
5: ...osten, M., Jakobi, A., Castro-Hartmann, P., Qian, P., Koblizek, M.
7: Description: Cryo EM structure of RC-dLH complex model II from Gemmatimonas groenlandica
12: [[Category: Qian, P]]
13: [[Category: Joosten, M]]
9gso (1,519 bytes)
2: ...=DNA binding domain of J-DNA Binding Protein 3 (JBP3)==
3: ...ctureSection load='9gso' size='340' side='right'caption='[[9gso]], [[Resolution|resolution]] 1.61&Ari...
5: ...n the structure components use [https://proteopedia.org/fgij/fg.htm?mol=9GSO FirstGlance]. 
6: ...</tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockD...
7: ...h-its.org/prosat/prosatexe?pdbcode=9gso ProSAT]</td></tr>
9gsq (1,764 bytes)
2: ...=DNA binding domain of J-DNA Binding Protein 3 (JBP3)==
3: ...ctureSection load='9gsq' size='340' side='right'caption='[[9gsq]], [[Resolution|resolution]] 1.70&Ari...
5: ...n the structure components use [https://proteopedia.org/fgij/fg.htm?mol=9GSQ FirstGlance]. 
6: ...</tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockD...
7: ...pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
8bbm (2,452 bytes)
2: ...=DNA binding domain of J-DNA Binding Protein 1 (JBP1)==
3: ...ctureSection load='8bbm' size='340' side='right'caption='[[8bbm]], [[Resolution|resolution]] 1.95&Ari...
5: ...n the structure components use [https://proteopedia.org/fgij/fg.htm?mol=8BBM FirstGlance]. 
6: ...</tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockD...
7: ...<td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></t...
Category:Joosten, R.P (43 bytes)
1: List of pages with the keyword Joosten, R.P
4pg9 (3,710 bytes)
2: ...lex with Sendai virus nucleoprotein peptide FAPGNYPAL==
3: ...on load='4pg9' size='340' side='right'caption='[[4pg9]], [[Resolution|resolution]] 2.40&Aring;' scene...
5: .../b> use [https://proteopedia.org/fgij/fg.htm?mol=4PG9 FirstGlance]. 
6: ...</tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockD...
7: ...<td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
4pgb (3,470 bytes)
2: ...modified Sendai virus nucleoprotein peptide FAPGNWPAL==
3: ...on load='4pgb' size='340' side='right'caption='[[4pgb]], [[Resolution|resolution]] 2.80&Aring;' scene...
5: .../b> use [https://proteopedia.org/fgij/fg.htm?mol=4PGB FirstGlance]. 
6: ...</tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockD...
7: ...h-its.org/prosat/prosatexe?pdbcode=4pgb ProSAT]</td></tr>
4pgc (3,799 bytes)
2: ...us nucleoprotein peptide FAPGN(3,5-diiodotyrosine)PAL==
3: ...on load='4pgc' size='340' side='right'caption='[[4pgc]], [[Resolution|resolution]] 2.30&Aring;' scene...
5: .../b> use [https://proteopedia.org/fgij/fg.htm?mol=4PGC FirstGlance]. 
6: ...</tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockD...
7: ...pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=TYI:3,5-DIIODOTYROSINE'>TYI</scene></td><...

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