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1. Image:2fkl pymol representation.png (113 bytes)
   2: pymol representation of 2fkl
2. PyMOL (4,176 bytes)
   1: ...scientific.com/ Warren DeLano]. Effective use of PyMOL requires that you become familiar with highly abb...
   3: ...of PyMOL that are not supported by Jmol. Also, as PyMOL continues to be developed, new fixes in Jmol will...
   5: ... provide [http://packages.debian.org/stable/pymol PyMOL packages] compiled from the open-source code.
   7: ...of the package. Python enables users to automate PyMOL with simple command scripts and to develop plugin...
   9: ...ains available for download, and that support for PyMOL is continuing. A statement similar to the followi...
3. Image:1KLN pymol.pdb (98 bytes)
4. Image:2KTQ pymol.pdb (34 bytes)
5. Image:3KTQ pymol.pdb (109 bytes)
6. Image:Pymol.png (0 bytes)
7. User:Wayne Decatur/4ay9 pymol (1,229 bytes)
   2: ===In PyMol===
   3: ...cture that in the paper is represented as a loop, PyMol was making a helix. It was small and not overly n...
   13: ...mol Posted Command Syntax and Atom Selections for PyMol]
   14: ...mol Posted Command Syntax and Atom Selections for PyMol with 'resi' used]
   15: ...ol.sourceforge.net/newman/user/S0260cartoons.html Pymol Users manual page on secondary structure]
8. User:Wayne Decatur/Sandbox 4ay9 pymol (43 bytes)
   1: #REDIRECT [[User:Wayne Decatur/4ay9 pymol]]
9. Image:NTCP Protein Pymol.png (0 bytes)
10. Image:Thumbnail PyMOL MRAS PP1C pic.png (0 bytes)
11. Image:Thumbnail PyMOL MRAS PP1Cpic.png (0 bytes)
12. Image:Pymol p56965 with L-homo.png (68 bytes)
13. Image:JT Pymol Practice Image.jpg (0 bytes)
14. Image:Omar Saleh PyMOL Figures.png (415 bytes)
15. Image:Pymol ligand pic.png (0 bytes)
16. Image:Tsr Receptor in Pymol.jmol (0 bytes)
17. Image:PyMOL.jpg (0 bytes)
18. Image:PyMOL NTCP Morph Movie.pse (0 bytes)
19. Image:Pymol image 1.jpg (0 bytes)
20. Image:RPE65 Emixustat and Palmitate PyMOL.jpg (0 bytes)

Page text matches

1. Image:1xjo cartoon.png (42 bytes)
   1: Cartoon drawing of SGAP, 1xjo, using PyMOL
2. User:Wayne Decatur/UNH BCHEM833 Structural Analysis Workshop Session Fall 2012 (17,130 bytes)
   89: * [http://pymol.org/ PyMol]
   92: ...n Jmol], more informative than [http://pymol.org/ PyMol]
   101: **PyMol: [http://www.pymolwiki.org/index.php/Distance Two ways]
   113: **PyMol
   114: ***'super' command in Pymol, see [http://www.pymolwiki.org/index.php/Super here]
3. User:Boris Brumshtein (9,260 bytes)
   42: ...ar modeling, visualization and analysis software: PyMol, Coot, XtalView, O, CCP4, APBS.
4. Sculpting protein conformations (6,480 bytes)
   25: ==PyMOL==
   27: [[PyMOL]], originally developed by [[User:Warren DeLano|W...
   36: * Sculpting in PyMOL is described as unsupported (see below) and there...
   37: * PyMOL is not free, although many institutions have site...
   38: | width="600" |<qt>file=1al1-stretch-pymol.mp4|width=615|height=260|autoplay=false|controlle...
5. Sandbox Reserved 702 (26,587 bytes)
   10: [[Image:1lvc.png|thumb|220px|left|PyMol representation of 1lvc]]
6. Molecular Playground/Nickel Superoxide Dismutase (4,609 bytes)
   24: ...humb|Fig. 2: Hexameric NiSOD. Figure created with PyMol. PDB ID [[1t6u]].]]
7. Image:Y21m08d20 msn2 0.pdb (85 bytes)
   1: pymol local structural alignment of dbd of msn2 and msn...
8. Image:Y21m08d20 msn2 align.pdb (51 bytes)
   1: alphafold msn2 msn4 aligned locally on dbd by pymol
9. Image:CuII coordination complex.jpg (443 bytes)
   3: This figure was made thanks to pyMol program.
10. Image:2fkl pymol representation.png (113 bytes)
    2: pymol representation of 2fkl
11. Sandbox Reserved 895 (30,318 bytes)
    14: ...Figure 1C''' was generated using PyMol. <ref> The PyMOL Molecular Graphics System, Version 2.3.3, Schröd...
    16: ... generated in PyMOL using PDB: ''4RSV'' <ref> The PyMOL Molecular Graphics System, Version 2.3.3, Schröd...
    18: ...tat outlined using PyMOL, PDB: ''4RSV'' <ref> The PyMOL Molecular Graphics System, Version 2.3.3, Schröd...
    44: ...two-stranded extension on blade III, generated in PyMol and shown in '''Figure 4'''. The top face of the ...
    46: ... using PyMol. <ref> DOI 19805034 </ref> <ref> The PyMOL Molecular Graphics System, Version 2.3.3, Schröd...
12. User:Eric Martz (28,305 bytes)
    392: *[[PyMOL]]
    584: *[[User:Eric Martz/Sandbox 7]] PyMOL translator notes
13. Proteopedia:Wishlist (29,517 bytes)
    15: ...a remark into PDB when returning a morph from the pymol morph server
14. Morphs (23,799 bytes)
    65: ...sindex.org MolVisIndex.Org].</ref>, such as Jmol, PyMol, etc. Since Proteopedia uses Jmol, we'll mention ...
    76: ...h [[PyMOL]]. You don't have to license or install PyMOL or learn how to use it. This is the easiest way. ...
    77: ...D, and should be relatively simple to use for any PyMOL-user.
    124: ====Proteopedia PyMOL Morpher====
    126: ...ends a morph request to the [https://pymol.org/2/ PyMOL program] and automatically uploads the resulting ...
15. Large Ribosomal Subunit of Haloarcula (28,637 bytes)
    21: ... [[1s72ALPHACplusccapuro.PDB.gz]]. {I verified in PyMol that chain 5 only selects CCA-puromycin, unlike t...
16. Sandbox Reserved 713 (8,769 bytes)
    11: ...l pymol representation.png| thumb | 220px | left| PyMol representation of 2fkl]]
17. User:Paul Craig (780 bytes)
    1: ...gram (such as Rasmol) to another program (such as PyMOL). In this way, a user who knows one scripting lan...
18. User:Wayne Decatur/UNH BCHEM833 Structural Proteomics Introductory Lecture Fall 2012 (10,233 bytes)
    38: **Calculate in PyMol --> http://www.pymolwiki.org/index.php/Get_Area
    57: ...ew3d.html Polyview-3D] = fancy [http://pymol.org/ PyMol] views and animations made super easy via a web s...
    61: *[http://pymol.org/ PyMol]
19. Help:Teaching with Proteopedia (11,440 bytes)
    51: ...n be exported as a static image or animation in [[PyMOL]] using free [[Polyview-3D]].
20. History of Macromolecular Visualization (1,909 bytes)
    28: *[[PyMOL]]

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