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User:Fadel A. Samatey (1,907 bytes)
1: ...ute of Science and Technology. Protein crystallographer.
2: ...embrane-trafficking-unit oist.jp/trans-membrane-trafficking-unit]
3: .../細胞膜通過輸送研究ユニット oist.jp/ja/細胞膜通過輸送研究ユニット]
5: ==Public Articles==
7: ...r articles on specific proteins studied by the Samatey Group.
User:Fadel A. Samatey/Workbench/I3DC-1 (62 bytes)
1: This page has been moved to [[User:Fadel A. Samatey/FlhBc I]].
Fadel A. Samatey Group (Japanese) (12,037 bytes)
1: ...00%">サマテ研究室'''[[en:Fadel A. Samatey Group]]
3: :This article in English: [[Fadel A. Samatey Group]].
4: ...ont color="red">Translation of this article to Japanese is in progress.-->
6: ...ref name="hook1">PMID:15510139</ref>.</td></tr></table>
8: ...ist.jp/ja/research/research-units/unit-transmem-traffick.html 細胞膜通過輸送研究室]の代...
Image:Protein crystals samatey.png (58 bytes)
Image:Samatey hook copyright nature 2004.gif (58 bytes)
Fadel A. Samatey Group (16,646 bytes)
1: ...Group (Japanese)]][[ja:Fadel A. Samatey Group (Japanese)]]
2: ...ref name="hook1">PMID:15510139</ref>.</td></tr></table>
4: ...roteins in [[Flagella, bacterial|bacterial flagella]].
6: ... Universit&eacute; Joseph Fourier] in Grenoble, France.
8: ...OIST|Below]] are listed contributions from the Samatey Group, most recent first.
Samatey (2,885 bytes)
1: ... A. Samatey Group]], [[Fadel A. Samatey Group (Japanese)|サマテ研究室]].
3: ...round-color:#ffff80;">&nbsp;Open Access:&nbsp;[http://dx.doi.org/10.1107/S0907444913002102 doi...
4: ...l A. Samatey/FlhBc I|FlhBc in Interactive 3D]]
7: ...round-color:#ffff80;">&nbsp;Open Access:&nbsp;[http://dx.doi.org/10.1038/srep27399 DOI: 10.103...
8: ...del A. Samatey/FlgA I|FlgA in Interactive 3D]]
User:Fadel A. Samatey/Workbench/I3DC-2 (1,652 bytes)
1: ...amatey/3]] after publication of the corresponding article.
3: <StructureSection size='450' side='right' caption=''
6: ==Caulobacter Hook Model==
8: ...alpha carbons are displayed with a radius of 3.5 &Aring;.</ref>).
10: ...is filled by domains D0 and D1, but these domains are missing in this model.
User:Fadel A. Samatey/Workbench/I3DC-3 (59 bytes)
1: The contents of this page have been moved to [[Samatey/2]].
User:Fadel A. Samatey/Workbench/I3DC-4 (57 bytes)
1: This page was moved to [[Samatey/4]] on November 4, 2016.
User:Fadel A. Samatey/Workbench/I3DC-5 (2,344 bytes)
1: ==Conservation in the FlgE Hook of Campylobacter jejuni==
2: ...StructureSection load='' size='430' side='right' caption='' scene='47/478825/Hkcj_consurf/1'>
4: ... the central reference chain have insufficient data (yellow).</ref> of the hook monomer, FlgE.
5: <center>{{Template:ColorKey_ConSurf_NoGray}}</center>
7: ...='47/478825/Hkcj_consurf/7'>Zoom in on conserved salt bridges</scene>.
User:Fadel A. Samatey/FlhBc I (8,420 bytes)
1: ...roteopedia|Interactive 3D Complement in Proteopedia]] 
2: [[Image:Acta_Cryst_D.png|900 px]]
4: ...hort loop in one of its membrane proteins. 
5: ...fff80;padding:3px;">Open Access.
7: Contact: [[Image:Samatey-email-address.png|160px]]
Image:Samatey-email-address.png (0 bytes)
Category:Samatey, A F (43 bytes)
1: List of pages with the keyword Samatey, A F
Category:Samatey, F A (43 bytes)
1: List of pages with the keyword Samatey, F A
User:Fadel A. Samatey/FlgA I (9,197 bytes)
1: ...roteopedia|Interactive 3D Complement in Proteopedia]] 
2: {{Clear}} 
4: ...pan style="font-size:250%;">Scientific Reports
5: ...://www.nature.com/srep nature.com/srep]
7: {{Clear}}
Image:Samatey-FlgA-Align02a-321px-sh.gif (0 bytes)
User:Fadel A. Samatey/FlgE I (9,569 bytes)
1: <!-- not used: Image:Workbench 3vi9 chain b.pdb.gz
2: used Image:MPSupportVersion03.spt
4: ...roteopedia|Interactive 3D Complement in Proteopedia]] 
5: {{Clear}} 
7: ...pan style="font-size:250%;">Scientific Reports
User:Fadel A. Samatey/FlgE II/Complete Flagellar Hook Structure (9,966 bytes)
1: ...roteopedia|Interactive 3D Complement in Proteopedia]] 
2: {{Clear}} 
4: ... style="font-size:200%;">Nature Communications
5: ...ww.nature.com/ncomms nature.com/ncomms]
7: {{Clear}}
User:Fadel A. Samatey/Workbench/I3DC-6 (113 bytes)
1: ... Samatey/FlgE III/Intrinsically Disordered Flagellar Rod Stretch]].

Page text matches

Research Groups, Institutes & Programs (648 bytes)
1: ...groups, programs or institutes related to structural biology.
3: ...rogram, University of Massachusetts, Amherst MA USA]]
4: *[[Fadel A. Samatey Group]]
5: ... Clinical Biochemistry]], University of Oslo, Norway.
6: ...otein Complexes]], a consortium of multiple European institutions.
User:Eric Martz/Workbench 02 (223 bytes)
1: This page is to test read access by users with permission.
3: Permission has been given to:
4: *Nikhil Malvankar
5: *Yangqi Gu
6: *Vishok Srikanth
1io1 (4,128 bytes)
2: ==CRYSTAL STRUCTURE OF F41 FRAGMENT OF FLAGELLIN==
3: ...caption='[[1io1]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
4: == Structural highlights ==
5: ...tps://proteopedia.org/fgij/fg.htm?mol=1IO1 FirstGlance]. 
6: ...d><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr...
2bgy (4,545 bytes)
2: ...ment flge31 into an EM map from the hook of Caulobacter crescentus.==
3: ...aption='[[2bgy]], [[Resolution|resolution]] 20.00&Aring;' scene=''>
4: == Structural highlights ==
5: ...tps://proteopedia.org/fgij/fg.htm?mol=2BGY FirstGlance]. 
6: ...ethod:]]</td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] ...
2bgz (4,520 bytes)
2: ...CKING AN X-RAY DERIVED HOOK STRUCTURE INTO AN EM MAP.==
3: ...aption='[[2bgz]], [[Resolution|resolution]] 12.00&Aring;' scene=''>
4: == Structural highlights ==
5: ...tps://proteopedia.org/fgij/fg.htm?mol=2BGZ FirstGlance]. 
6: ...ethod:]]</td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] ...
2d4x (2,497 bytes)
2: ==Crystal structure of a 26K fragment of HAP3 (FlgL)==
3: ...caption='[[2d4x]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
4: == Structural highlights ==
5: ...tps://proteopedia.org/fgij/fg.htm?mol=2D4X FirstGlance]. 
6: ...d><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></...
2d4y (2,497 bytes)
2: ==Crystal structure of a 49K fragment of HAP1 (FlgK)==
3: ...caption='[[2d4y]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
4: == Structural highlights ==
5: ...tps://proteopedia.org/fgij/fg.htm?mol=2D4Y FirstGlance]. 
6: ...d><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></...
Proteopedia:Featured JRN/4 (1,278 bytes)
1: <table>
3: <imagemap>
4: Image:Featured-pila-nc-6vk9.gif|center
5: ...[[User:Nikhil Malvankar/Geobacter pilus structure and function]]
6: </imagemap>
User:Eric Martz (29,690 bytes)
1: {| class="wikitable" align="right" width="300"
2: |[[Image:Eric 1Day Workshop Osaka2009 small.jpg|300px]]
4: ...y of [[Proteopedia:Scrapbook#Workshops|Akihiro Kawamoto]].
7: 
10: IN PROGRESS/ASSIGNMENTS:
User:Vladimir Meshcheryakov (286 bytes)
1: ...el A. Samatey at the Okinawa Institute of Science and Technology.
3: ...ne of its membrane proteins'': [[User:Fadel_A._Samatey/FlhBc_I]]
User:Fadel A. Samatey (1,907 bytes)
1: ...ute of Science and Technology. Protein crystallographer.
2: ...embrane-trafficking-unit oist.jp/trans-membrane-trafficking-unit]
3: .../細胞膜通過輸送研究ユニット oist.jp/ja/細胞膜通過輸送研究ユニット]
5: ==Public Articles==
7: ...r articles on specific proteins studied by the Samatey Group.
The Bacterial Flagellar Hook (5,770 bytes)
1: ...] for an overview of where the hook fits in the flagellum.
5: ... continue to be rotated by the motor at all these angles.
8: ...ckview gene flgE]), a protein of length 402 amino acids.
11: ..._1_mmol/3' caption='Salmonella typhimurium flagellar hook protein FLGE [[1wlg]]'/>
12: ...the protein to crystallize, instead of forming filaments.
X-ray crystallography (3,368 bytes)
1: {| class="wikitable" align="right" width="400px"
2: |[[Image:X ray diffraction flow chart Splettstoesser.png|400px]]
4: ...iffraction.png Image] from Wikimedia courtesy Thomas Splettstoesser.)
7: ...clue as to whether major errors may be present in a published model.
9: ...f>. Efforts are underway to improve this success rate<ref>PMID: 22653729</ref>.
Image:Flagellar hook 3rings.pdb.gz (266 bytes)
1: ...F,G,H,I,J,K,L, except the middle chain of A is W, and of E is X.
Proteopedia:Scrapbook (5,944 bytes)
1: ...s for photos about Proteopedia, its dissemination and development.
3: ==Proteopedia People==
4: ..., about upgrading the infrastructure of Proteopedia were:
5: {| class="wikitable"
6: |[[Image:Jaim-2024-03.png|150px]]
Interactive 3D Complements in Proteopedia (7,603 bytes)
1: ...otection From Editing|protected]] from editing by anyone.
3: ...oteopedia:I3DC|I3DC pages]]''' available for open access.
5: For more details, please [[Special:Contact|Contact]] us.
7: ==Journals Adopting I3DC==
8: [[Image:Jbic_logo.jpg|left|120px|]]
Structure superposition tools (28,712 bytes)
1: ...ips that may not be discernable from sequence comparisions<ref>PMID: 10686110</ref>.
3: ...isted, along with results of testing with a few examples.
5: There are two common applications of structure superposition servers:
6: ...s (or specify them from the [[PDB]]) and generate a structure superposition.
7: ...perpositions between your query structure versus each structure in the [[PDB]].
User:Fadel A. Samatey/Workbench/I3DC-1 (62 bytes)
1: This page has been moved to [[User:Fadel A. Samatey/FlhBc I]].
Fadel A. Samatey Group (Japanese) (12,037 bytes)
1: ...00%">サマテ研究室'''[[en:Fadel A. Samatey Group]]
3: :This article in English: [[Fadel A. Samatey Group]].
4: ...ont color="red">Translation of this article to Japanese is in progress.-->
6: ...ref name="hook1">PMID:15510139</ref>.</td></tr></table>
8: ...ist.jp/ja/research/research-units/unit-transmem-traffick.html 細胞膜通過輸送研究室]の代...
Flagellar protein (8,074 bytes)
1: ...' caption='Flagellin major fragment of ''Salmonella typhimurium'' (PDB code [[1io1]])' scene=''>
6: ...lament, a universal joint (hook), and a motor (basal body).|200px]] 
7: ...be involved in functions other than motility<ref name="otherfunctions">PMID: 17920274</ref>.
8: ... essential for P-ring formation in ''Salmonella'' and ''E. coli''<ref>PMID: 27273476</ref>.
9: ...D''' is essential for hook assembly in ''Salmonella''<ref>PMID: 8157595</ref>.

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