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Category:Thermocrinis Great Boiling Spring virus (70 bytes)
1: List of pages with the keyword Thermocrinis Great Boiling Spring virus
Category:Bl41xu spring-8 (46 bytes)
Category:Riken spring-8 center (52 bytes)
Student Project 10 for UMass Chemistry 423 Spring 2015 (13,898 bytes)
1: =='''Estrogen receptor beta/genistein complex'''==
2: ...iam Doherty, Kyle Missaggia, Anya Novikova, Soo Lim Eunice Park
4: [[Student Projects for UMass Chemistry 423 Spring 2015]]
7: ...ow) and genistein' scene='Insert optional scene name here' />
9: ...ne expression, and modulate immune responses<ref>PMID: 1552044</ref>.
Student Projects for UMass Chemistry 423 Spring 2016 (14,869 bytes)
1: '''Understanding the chemical basis of disease and life processes'''
6: ...Optional Team or Teammate requests in Moodle by 1pm 2/1'''
7: ...mistry and chemical engineering majors on most teams.
8: ... '''Topic and pdb code due in Moodle Friday 2/5 1pm.'''
9: ...tailed Proteopedia page for the same complex or same pdb code.
Student Project 2 for UMass Chemistry 423 Spring 2015 (10,857 bytes)
1: =='''Human Transthyretin (TTR) complexed with genistein '''==
2: by Arash Manafirad, Mahdiyeh Yazdani, Allison Coutu, Jack Caudwell, Chr...
4: [[Student Projects for UMass Chemistry 423 Spring 2015]]
7: ...on='Ribbon diagram of the transthyretin (TTR) monomer with its beta-sheets' />
10: ...erebrospinal fluid is 0.2-0.3 mg mL-1 and 0.02 mg mL-1 respectively.
Student Projects for UMass Chemistry 423 Spring 2011 (24,909 bytes)
1: ...cene='User:Lynmarie_K_Thompson/Sandbox_1/Loadedfrompdb/4' caption=''>
6: ...Chem423 Team Projects: Understanding Drug Mechanisms'''
11: ...cture selection, due 4/1/11: All projects & names must be posted on the list below, linking to sandbo...
12: ...below (use editing button above (Ab) or follow my model).
14: :Copy the message at the top of this page into your sandbox p...
Student Projects for UMass Chemistry 423 Spring 2012 (19,117 bytes)
1: ... 2012 Chem423 Team Projects: Understanding the chemical basis of disease and life processes'''
7: ...s on most teams. You may request one teammate by emailing the TA by noon Feb 16.
8: ...r why it is interesting. Add your topic to the team list at [[Sandbox423]] by 2/24.
11: ...age''': Find the pdb id for your protein-ligand complex in the Protein Data Bank. In your assigned sa...
14: ... to discuss the overall organization as needed to make it logical and avoid duplication. As individua...
Student Project 5 for UMass Chemistry 423 Spring 2015 (14,775 bytes)
2: by Nick Barberio, Nicole Garvin, Megan Greiner, Peter Kelly, Charit Tippareddy, John...
4: [[Student Projects for UMass Chemistry 423 Spring 2015]]
7: ...n='TYK2 Protein Chains Painted N terminus to C terminus (PDB code [[4py1]])' scene='48/483886/4py1/1'...
9: ...of progress needs to be made to find a cure <ref>PMID: 19042040</ref>.
12: ...-binding residues to LRRK2 <ref name ="Galatsis">PMID: 25113930</ref>.
Student Project 6 for UMass Chemistry 423 Spring 2015 (11,745 bytes)
1: =='''Human Pim-1 Kinase in Complex with an Aminooxadiazole-indole Inhibitor - 4ty1'''==
2: ...te, Lee Johnson, Deanna Oliveira, Seo Yeon Orite, Mark Allen Pagkaliwangan
4: [[Student Projects for UMass Chemistry 423 Spring 2015]]
7: ...ntenced to death.' scene='Insert optional scene name here' />
10: ...on nonspecific serine and threonine kinases <ref>PMID:19749799</ref>.
Student Project 7 for UMass Chemistry 423 Spring 2015 (14,430 bytes)
1: ...[http://www.mediawiki.org/wiki/Help:Formatting Format Help]'''=== -->
3: ='''MTH1/crizotinib'''=
4: ...ina, Cassandra Martin, Eric Rice, Benjamin Ryter, Matthew Tuttle
6: [[Student Projects for UMass Chemistry 423 Spring 2015]]
9: ...='true' align='right' caption='Basic Structure of MTH1/S-crizotinib' scene='48/483888/Basic/1' />
Student Project 8 for UMass Chemistry 423 Spring 2015 (7,101 bytes)
2: =='''Sulfonylpiperidine Ligand as Thymidylate Kinase Inhibitor'''==
3: ...Kinase Inhibitor ' scene='Insert optional scene name here'>
4: ...ilbride, Ross Furash, Michael Grunwald, Lauren Okamoto, Laura Ornes, Randy Phan
6: [[Student Projects for UMass Chemistry 423 Spring 2015]]
9: ...a possible source of attachment for a drug or enzyme.
Student Project 9 for UMass Chemistry 423 Spring 2015 (10,861 bytes)
2: ...laucke, Sarah Johnson, Christina Lincoln, Bach Pham, Zachary Plourde
4: [[Student Projects for UMass Chemistry 423 Spring 2015]]
6: .... pdbcode: 1q3d.' scene='Insert optional scene name here'>
11: ...udes type II diabetes, Alzheimer's Disease, inflammation, cancer, and neurological disorders such as ...
12: ...inhibitor in regards to GSK-3β<ref name="paper">PMID: 14529625</ref>.
Category:Spring D (39 bytes)
Category:Spring AM (40 bytes)
1: List of pages with the keyword Spring AM
Category:Spring, A M (42 bytes)
1: List of pages with the keyword Spring, A M
Category:Spring, D (40 bytes)
Student Projects for UMass Chemistry 423 Spring 2015 (14,963 bytes)
1: '''Understanding the chemical basis of disease and life processes'''
5: ... requests: You may request one teammate by 2/2 in Moodle.
6: ...mistry and chemical engineering majors on most teams.
8: ...2. Topic and pdb code due in Moodle Monday 2/9 11pm'''
9: ...tailed Proteopedia page for the same complex or same pdb code.
Student Projects for UMass Chemistry 423 Spring 2012-1 (17,363 bytes)
3: [[Student Projects for UMass Chemistry 423 Spring 2012]]
6: ...3loh).' scene='Sandbox_Reserved_427/Rcb_dimer_monomers/2' />
8: ...he membrane and into the interior of the cell and mediates activity by the addition of phosphate to t...
10: ...s a role in the mediation embryonic growth. <ref>PMID: 12471165</ref>
12: ...omers of the biologically functional dimer. <ref>PMID: 18991400</ref>
Student Projects for UMass Chemistry 423 Spring 2012-2 (12,935 bytes)
1: =='''Cisplatin-DNA complex- 1a84'''==
3: [[Student Projects for UMass Chemistry 423 Spring 2012]]
5: ...aption='Cisplatin' scene='Insert optional scene name here' />
7: ...f cancer. <ref> adhttp://en.wikipedia.org/wiki/Chemotherapy</ref>
9: ...ng cis-Diammaineplatium" Department of Chemistry, MIT:1998</ref>

Page text matches

Hemoglobin (19,234 bytes)
1: ...raphic structure of HbII- oxy [[3P31]]" scene="Hemoglobinits/5" >
3: ... Hemoglobin is an allosteric protein. It is a <jmol>
4: <jmolLink>
7: <text>tetramer</text>
8: </jmolLink>
1wa5 (4,745 bytes)
2: ==Structure of the Cse1:Imp-alpha:RanGTP complex==
5: ...ents use [https://proteopedia.org/fgij/fg.htm?mol=1WA5 FirstGlance]. 
6: ...odels|Method:]]</td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resoluti...
7: .../scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
8: ...a5 RCSB], [https://www.ebi.ac.uk/pdbsum/1wa5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbc...
1af2 (5,071 bytes)
2: ==CRYSTAL STRUCTURE OF CYTIDINE DEAMINASE COMPLEXED WITH URIDINE==
5: ...ents use [https://proteopedia.org/fgij/fg.htm?mol=1AF2 FirstGlance]. 
6: ...odels|Method:]]</td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resoluti...
7: ...5P:URIDINE-5-MONOPHOSPHATE'>U5P</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
8: ...f2 RCSB], [https://www.ebi.ac.uk/pdbsum/1af2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbc...
9qy7 (428 bytes)
5: ...ors: Brear, P., Glossop, P., Pandey, S., Hyvonen, M., Spring, D., Butt, R., Cawkill, D.
10: [[Category: Hyvonen, M]]
Sandbox: 5VKQ (10,345 bytes)
1: ...), resolution 3.55 Å' scene='10/1083740/Homotetramer_0/1'>
5: ...found in other animals, including the nematode worm ''Caenorhabditis elegans'' and the zebrafish.
7: <scene name='10/1083740/Homotetramer_0/1'>(Click to reset the protein view.)</scene>
9: == Structure and mechanism of action ==
11: ...tion of the TRP domain in S6 movement and pore formation. (Source: Wang et al. Elife. 2021;10:e58388....
9l3s (4,411 bytes)
2: ==Staphylococcus aureus lipase-Penfluridol complex (in space)==
5: ...ents use [https://proteopedia.org/fgij/fg.htm?mol=9L3S FirstGlance]. 
6: ...odels|Method:]]</td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resoluti...
7: ...bligand=PPI:PROPANOIC+ACID'>PPI</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
8: ...3s RCSB], [https://www.ebi.ac.uk/pdbsum/9l3s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbc...
1jdn (4,473 bytes)
2: ==Crystal Structure of Hormone Receptor==
5: ...ents use [https://proteopedia.org/fgij/fg.htm?mol=1JDN FirstGlance]. 
6: ...odels|Method:]]</td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resoluti...
7: ...NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene></td></...
8: ...dn RCSB], [https://www.ebi.ac.uk/pdbsum/1jdn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbc...
1jdp (4,227 bytes)
2: ==Crystal Structure of Hormone/Receptor Complex==
5: ...ents use [https://proteopedia.org/fgij/fg.htm?mol=1JDP FirstGlance]. 
6: ...odels|Method:]]</td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resoluti...
7: ...ne>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
8: ...dp RCSB], [https://www.ebi.ac.uk/pdbsum/1jdp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbc...
7i9d (695 bytes)
5: ...hens, L.R., Hawkins, P.T., Spring, D.R., Hyvonen, M.
7: ...iption: Crystal Structure of 14 bound to the ph domain of Btk
13: [[Category: Hyvonen, M]]
16: [[Category: West, R.M]]
20: [[Category: Sanders, M.G]]
7i9e (695 bytes)
5: ...hens, L.R., Hawkins, P.T., Spring, D.R., Hyvonen, M.
7: ...iption: Crystal Structure of 18 bound to the ph domain of Btk
9: [[Category: West, R.M]]
13: [[Category: Sanders, M.G]]
18: [[Category: Hyvonen, M]]
7i8r (404 bytes)
5: ...ors: Brear, P., Glossop, P., Pandey, S., Hyvonen, M., Spring, D., Butt, R., Cawkill, D.
7: Description: Crystal Structure of 54m bound to CK2a
11: [[Category: Hyvonen, M]]
2pkv (2,806 bytes)
2: ==D-(GGTATACC) ambient pressure==
5: ...ents use [https://proteopedia.org/fgij/fg.htm?mol=2PKV FirstGlance]. 
6: ...odels|Method:]]</td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resoluti...
7: ...kv RCSB], [https://www.ebi.ac.uk/pdbsum/2pkv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbc...
10: == Publication Abstract from PubMed ==
3caa (4,042 bytes)
2: ==CLEAVED ANTICHYMOTRYPSIN A347R==
5: ...ents use [https://proteopedia.org/fgij/fg.htm?mol=3CAA FirstGlance]. 
6: ...odels|Method:]]</td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resoluti...
7: ...aa RCSB], [https://www.ebi.ac.uk/pdbsum/3caa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbc...
10: ...t angiotensin-1 to the active angiotensin-2.<ref>PMID:2404007</ref>
4caa (4,042 bytes)
2: ==CLEAVED ANTICHYMOTRYPSIN T345R==
5: ...ents use [https://proteopedia.org/fgij/fg.htm?mol=4CAA FirstGlance]. 
6: ...odels|Method:]]</td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resoluti...
7: ...aa RCSB], [https://www.ebi.ac.uk/pdbsum/4caa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbc...
10: ...t angiotensin-1 to the active angiotensin-2.<ref>PMID:2404007</ref>
8q1q (3,525 bytes)
2: ==mouse Keap1 in complex with stapled peptide==
5: ...ents use [https://proteopedia.org/fgij/fg.htm?mol=8Q1Q FirstGlance]. 
6: ...odels|Method:]]</td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resoluti...
7: ...'pdbligand=NH2:AMINO+GROUP'>NH2</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr...
8: ...1q RCSB], [https://www.ebi.ac.uk/pdbsum/8q1q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbc...
8q1r (4,189 bytes)
2: ==mouse Keap1 in complex with stapled peptide==
5: ...ents use [https://proteopedia.org/fgij/fg.htm?mol=8Q1R FirstGlance]. 
6: ...odels|Method:]]</td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resoluti...
7: ...'pdbligand=NH2:AMINO+GROUP'>NH2</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr...
8: ...1r RCSB], [https://www.ebi.ac.uk/pdbsum/8q1r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbc...
1b5s (4,805 bytes)
2: ...DOMAIN (RESIDUES 184-425) FROM BACILLUS STEAROTHERMOPHILUS==
5: ...ents use [https://proteopedia.org/fgij/fg.htm?mol=1B5S FirstGlance]. 
6: ...odels|Method:]]</td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resoluti...
7: ...5s RCSB], [https://www.ebi.ac.uk/pdbsum/1b5s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbc...
10: ... dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
Category:Thermocrinis Great Boiling Spring virus (70 bytes)
1: List of pages with the keyword Thermocrinis Great Boiling Spring virus
9rn5 (671 bytes)
5: ...hens, L.R., Hawkins, P.T., Spring, D.R., Hyvonen, M.
7: ...iption: Crystal Structure of 33 bound to the ph domain of Btk
10: [[Category: Hyvonen, M]]
14: [[Category: West, R.M]]
17: [[Category: Sanders, M.G]]
9rmo (695 bytes)
3: The entry 9rmo is ON HOLD until Paper Publication
5: ...hens, L.R., Hawkins, P.T., Spring, D.R., Hyvonen, M.
7: ...iption: Crystal Structure of 31 bound to the PH domain of Btk
10: [[Category: West, R.M]]
12: [[Category: Hyvonen, M]]

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