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- User:Wayne Decatur/UNH BCHEM833 Structural Analysis Workshop Session Fall 2012 (17,130 bytes)
16: **Have a PDB id for a pertinent structure?
17: **Still need ideas for an interesting structure?
20: ***Still no structure eventually you may want to attempt generating a c...
23: ...otated [[Site|functional sites]] - highlighted in structure within every Proteopedia PDB entry that has such...
30: ...here] above references<nowiki>]</nowiki>, Nature Structure, Protein Science <nowiki>[</nowiki>example [http:... - SP3.4-TCR-HLA-DQ8-α-1-gliadin complex (13,714 bytes)
15: <StructureSection load='4gg6' size='350' side='right' captio...
17: == Structure of SP3.4 TCR-DQ8-Glia-αI Complex ==
19: [[Image:SP3.4 TCR-DQ8-Glia-αI Complex.jpeg|left]]
20: [[Image:Ligation binding.jpeg|right]] - User:Nathália Gagliardi Saldys/Sandbox 1 (6,446 bytes)
4: <Structure load='5EEM' size='350' frame='true' align='right'...
9: [[Image:WhatsApp Image 2025-07-08 at 16.14.38.jpeg]]
46: ...OPEAN BIOINFORMATICS INSTITUTE. AlphaFold Protein Structure Database – HDAC6 (Q9UBN7). Disponível em: http...
52: ...AI, Y.; CHRISTIANSON, D. W. Histone deacetylase 6 structure and molecular basis of catalysis and inhibition. ... - Sandbox Reserved 655 (11,098 bytes)
7: <Structure load='3vdh' size='500' frame='true' align='right'...
13: == '''Structure - the endoglucanase complex''' ==
14: ...er helices, as is common in (alpha/alpha)6-barrel structures (Parsiegla et al., 1998). The barrel is formed b...
23: ...ea, and lengths of loops connecting the secondary structures elements ( [Chan et al., 1995] and [Russell et a...
29: Methods for Solving the Structure: - User:Wayne Decatur/Chem791A Work Session (4,579 bytes)
5: *[http://www.rcsb.org/pdb/explore/explore.do?structureId=1RPU 1rpu at PDB]
8: ... a scientific 'wiki' bridging the rift between 3D structure and function of biomacromolecules'', Eran Hodis, ...
26: ...al:Upload]] List of allowed file types: png, jpg, jpeg, tiff, tif, gif, mgif, pdb, cif, mmcif, cml, mol,... - User:Stephanie Miller/Sandbox32 (4,209 bytes)
6: [[Image:Aequorea_victoria.jpeg|left|Aequorea Victoria]]
8: ...ximum at ~ 505 nm and a shoulder at ~ 540 nm. The structure of this protein consists of 238 amino acids, an 1...
14: ==Structure==
15: ..._barrel/3'>Beta Barrel</scene> that surrounds the structure. GFP contains only one <scene name='USMART1/Try66... - User:Wayne Decatur/Biochem642 Molecular Visualization Sessions (7,036 bytes)
2: ...structure and function of [[Ribosome|the ribosome structure]].
3: *Structures:
11: ...viZ "Top 5"] item III shows us how we can explore structures.
14: ...resources and information: [[About Macromolecular Structure]]
17: ==Viewing Structures== - Cory Tiedeman Sandbox 1 (5,213 bytes)
2: {{STRUCTURE_1one | PDB=1one | SCENE= }}
7: ==Structure==
8: ...edeman_Sandbox_1/Secondary_structure/1'>secondary structure</scene> of enolase contains both alpha helices an...
26: [[Image:enolase kinetics.jpeg|left|150px|V vs. [PGA]; PGA is 2PG, the top curve...
31: ...inding protein (MBP-1) is similar to the a-enolse structure and is found in the nucleus as a DNA-binding prot... - Enolase (6,866 bytes)
1: <StructureSection load='1one' size='350' side='right' captio...
5: ==Structure==
6: ...edeman_Sandbox_1/Secondary_structure/1'>secondary structure</scene> of enolase contains both alpha helices an...
21: [[Image:enolase kinetics.jpeg|left|200px|V vs. [PGA]; PGA is 2PG, the top curve...
25: ...inding protein (MBP-1) is similar to the a-enolse structure and is found in the nucleus as a DNA-binding prot... - User:Wayne Decatur/Biochem642 Molecular Visualization 2010 Fall Sessions (9,196 bytes)
6: ...structure and function of [[Ribosome|the ribosome structure]].
10: ...particularly item III shows us how we can explore structures.
11: ...]] - interactive 3D encylopedia of macromolecular structures and structural biology resources to which scient...
16: ***[[About Macromolecular Structure]]
26: * X-ray crystallography, NMR, and cryo-EM structures - total 68,840 - User:Wayne Decatur/UNH Seminar Feb 1st 2011 (11,864 bytes)
9: ...structure and function of [[Ribosome|the ribosome structure]]
27: ...er 70,000 X-ray crystallography, NMR, and cryo-EM structures
28: * about 85% are crystallographic structures
33: ...]] - interactive 3D encylopedia of macromolecular structures and structural biology resources to which scient...
41: **Macromolecular Structures - User:Wayne Decatur/UNH CME Workshop March 11 2011 (12,759 bytes)
18: ...er 70,000 X-ray crystallography, NMR, and cryo-EM structures
19: * about 85% are crystallographic structures
24: ...]] - interactive 3D encylopedia of macromolecular structures and structural biology resources to which scient...
29: **Macromolecular Structures
30: **[[About Macromolecular Structure]] - Allen sandbox 1 (6,694 bytes)
2: {{STRUCTURE_1one | PDB=1one | SCENE= }}
7: ==Structure==
9: ...edeman_Sandbox_1/Secondary_structure/1'>secondary structure</scene> of enolase contains both alpha helices an...
38: [[Image:enolase kinetics.jpeg|left|150px|V vs. [PGA]; PGA is 2PG, the top curve...
49: ...nding protein (MBP-1) is similar to the α-enolse structure and is found in the nucleus as a DNA-binding prot... - DOPA decarboxylase (22,276 bytes)
1: <StructureSection load='1dq8' size='450' side='right' captio...
22: ...homodimers and share a common, well-characterized structure, despite low-sequence identity. Each subunit has ...
29: ====Primary Structure====
30: ...cids that ultimately encode the three-dimensional structure of the protein. In 1991, the complete amino acid ...
31: ====Secondary Structure==== - User:Wayne Decatur/NASCE2011 (19,987 bytes)
11: ***main page--->[[Ribosome]] structure, spin, hover, measure distances, toggles, list, c...
14: *** learn of a structure in a meeting (Robert Milllar talk on Saturday) --...
19: **** note where link to 3D structure at [http://www.nature.com/nature/journal/v475/n73...
30: **Communicating specific ideas in context of structure --> e-mail a link to a [[Help:Sandboxes|Sandbox]]...
53: ==The Structure Data== - User:Brian Hernandez/DOPA Decarboxylase (6,997 bytes)
1: <StructureSection load='1js3' size='600' side='right' captio...
5: ...n the '''substantia nigra pars compacta''' (brain structure in the mesencephalon that plays an important role...
7: ==Structure==
9: ...rallel helices linked by an extended strand. This structure flaps over the top of the second subunit and vice...
21: ...and postural instability. [[Image:dopamine levels.jpeg|thmb|right|300px|'''Dopamine Levels''']]With it's... - Allosteric modulation of H-Ras GTPase (4,685 bytes)
1: {{STRUCTURE_3k8y| PDB=3k8y | SCENE= | CAPTION=H-Ras GTPase...
5: == Structure ==
7: ...e that is located by the Loop 7 and Helix 3. The structure of Ras actually forms slightly different when it ...
8: ...d Inactive Ras protein]] [[Image:GTP binding real.jpeg|thumb|600px|left|γ-phosphate binding to Q61, T35... - Androgen receptor (24,495 bytes)
1: <StructureSection load='3b5r' size='340' side='right' captio...
8: =Structure=
13: ...longer repeats cause reduced activity <ref name="Structure" />. In healthy people, one region of the AR gene...
16: ...teroid hormone nuclear receptor family <ref name="Structure" />. It has been shown that binding of this regio...
18: ...tes, separated by a 3 base-pair spacer <ref name="Structure" />. This domain is critical for AR function, due... - Sandbox Reserved 1794 (17,266 bytes)
3: ....org/structure/7ZYI PDB: 7zyi]' scene ='95/952721/Structure_overview/8'>
6: ...acid a crystalline bile acid''' Shown here is the structure in a line representation of taruocholic acid with...
12: == Structure ==
13: [[Image:NTCP topology official.jpeg|250px|left|thumb| '''Fig. 2: cartoon depiction of...
16: ...monstrates [https://en.wikipedia.org/wiki/Protein_structure two-fold pseudosymmetry]. The <scene name='95/95... - User:Angel Herraez/Sandbox 5 (3,912 bytes)
2: <StructureSection size='300' load='3rjs' side='right' captio...
5: This structure is monomeric in the asymmetric unit and dimeric i...
19: ...ene name='58/587840/From-jpg/1'>Scene loaded from JPEG, after preloading the pdb</scene>
26: </StructureSection>
30: <StructureSection size='300' load='' side='left' caption='He...
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