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1. Image:SwissDock 2.png (0 bytes)
2. Image:P30646 Swissdock image table.png (0 bytes)
3. Image:P30646 Swissdock Image.png (0 bytes)
4. Image:SwissDock table.png (0 bytes)
5. Image:SwissDock.png (0 bytes)
6. Image:SwissDock table2.png (0 bytes)
7. Image:SwissDock.PNG (0 bytes)

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1. 9oaf (5,238 bytes)
   16: ...1V amino-acid difference between the two enzymes. SwissDock modeling accurately predicted the SAHA binding or...
2. 9oam (5,227 bytes)
   16: ...1V amino-acid difference between the two enzymes. SwissDock modeling accurately predicted the SAHA binding or...
3. 9obj (5,226 bytes)
   16: ...1V amino-acid difference between the two enzymes. SwissDock modeling accurately predicted the SAHA binding or...
4. Sandbox2QRU (4,778 bytes)
   17: [[Image:2QRU(green)2LPR(yellow).png | thumb]]Analysis with Sprite displayed the prote...
   20: [[Image:2QRUChimera.png | thumb]]Chimera allows for the visualization and...
   28: ...png | thumb]][[Image:2QRU(green)2YH2D(orange)DALI.png | thumb]]Among all the highest related proteins, ...
   36: '''SwissDock'''
   37: ...iferyl 2-acetamido-2-deoxy-beta-D-glucopyranoside.png | thumb]]The analysis of 2QRU on this site was pe...
5. Sandbox3H04 (9,405 bytes)
   14: ...overlap shown here.[[Image:3HO4 overlap with 1n8o.png |200px|center|thumb|]]
   18: ...ich can be viewed here.[[Image:ChimeraAlignmentBS.png |300px|center|thumb|]]
   22: ...drolase was the function of 3H04.[[Image:INTERPRO.png |500px|center|thumb|]]
   27: ...ere the protein can be found.[[Image:DALIFUCEDSHT.png |300px|center|thumb|]]
   30: ...AE as seen in image below. [[Image:InterPro Image.png|400px|center|thumb|]]
6. Sand box 326 (5,760 bytes)
   28: [[Image:BLAST.png |300px|center|thumb|]]
   34: [[Image:SPRITE.png |300px|center|thumb|]]
   41: Using SwissDock, it was determined that larger, cyclic molecules ...
   46: [[Image:Screenshot_2025-04-28_110316.png |300px|center|thumb|]]
7. Sandbox 326 (16,536 bytes)
   36: '''SwissDock:
   38: ... "Docking with AutoDock Vina" tab was selected on SwissDock. A ligand by submitted by using SMILES string (fo...
   102: == Molecular Docking with SwissDock ==
   106: [[Image:SwissDock1.jpg]]
   152: [6] SwissDock. www.swissdock.ch. https://www.swissdock.ch/.
8. Sandbox 323 (10,380 bytes)
   60: The last molecular modeling strategy was using SwissDock to investigate different ligands for 3DS8. Using ...
   82: ...quence in programs such as Chimera, InterPro, and SwissDock. The combination of this research suggested that ...
9. Sandbox2O14 (13,532 bytes)
   39: SwissDock analysis was done on specific substrates includin...
   43: ...ffinity values ranging from -6.133 to -3.387. The SwissDock predicted four binding sites it believed molecule...
   86: [[Image:6_10mg10mLPNPASMALL.png]]
   93: [[Image:7_15mgPNPPSMALL.png]]
   107: [[Image:Firstswissdock.png]]
10. Sandbox326 (14,712 bytes)
    29: ...ch as Chimera, SPRITE, Dali, BLAST, InterPRO, and SwissDock allowed visualization of the protein’s structur...
    56: * SwissDock: computationally predicted how substrates would i...
    75: [[Image:SPRITE_pic.png]]
    79: [[Image:SPRITE_pic_2.png]]
    84: [[Image:Chimera_pic_2.png]]
11. Sandbox323 (18,439 bytes)
    13: [[Image:4Q7QABSequence.png|400px|left|thumb| Primary Sequences of the A and ...
    21: [[Image:4Q7QAChain.png|300px|right|thumb|Chimera-generated representatio...
    31: [[Image:4Q7QEsteraseConserv.png|300px|left|thumb| Conserved sequences of note bet...
    35: [[Image:4Q7QSecondaryEsterases.png|300px|left|thumb| Conserved secondary structures ...
    43: [[Image:4Q7QPAFASPRITE.png|300px|right|thumb|SPRITE-based alignment between ...
12. Sandbox324 (9,292 bytes)
    33: SwissDock and Chimera allowed for protein-ligand docking st...
13. Image:Cellobiose.png (33 bytes)
    1: Cellobiose results from SwissDock
14. Image:N-acetyl-D-glucosamine.png (33 bytes)
    1: NAG docked to Q8DN35 on SwissDock
15. Image:P30646XULcluster9ATP1.zip (51 bytes)
    1: P30646 with xylulose and ATP docked using SwissDock
16. Image:4Q7QDockingEnergies.png (120 bytes)
    2: SwissDock Results from 4Q7Q analysis
17. Image:DecanoateDocking.png (118 bytes)
    2: SwissDock Results 4Q7Q + Decanoate
18. 9o8x (5,276 bytes)
    16: ...1V amino-acid difference between the two enzymes. SwissDock modeling accurately predicted the SAHA binding or...
19. Image:Docking figure poster.png (127 bytes)
    1: SwissDock of 1ZBS and glucose as ligand in predicted active...
20. BASIL2023GVP30646 (6,363 bytes)
    26: ...otein of interest through docking tools including SwissDock and PyRx.
    31: [[Image:Structure-P30646.png]]
    41: [[Image:InterPro.png]]
    42: [[Image:DALI-Alignment.png]]
    44: ...rotein. In order to test this, our group utilized SwissDock and PyRx to conduct in silico docking experiments...

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