This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
User:Tommie Hata/Protein Structure Tutorial
From Proteopedia
|
Lysozyme, PDB ID 2lyz
Amino acids and primary structure
Proteins are polymers of amino acids. The "backbone" of the protein is made up of carbons and nitrogens. The amino acid sidechain extends out of the backbone. The linear sequence of amino acids in a polypeptide is referred to as its "primary structure".
Interactions between the protein backbone: secondary structure
Hydrogen bonds between backbone amide and carboxyl groups maintain some local structural characteristics referred to as secondary structure. Two common types of secondary structure are the alpha helices and the beta pleated sheet. .
3D structure of a protein maintained by interactions between amino acid sidechains: tertiary structure
The overall shape of a protein is maintained by the interaction between amino acid sidechains. The distribution of these sidechains across the protein (the primary structure) is largely responsible for determining tertiary structure.
Types of tertiary interactions
.
.
.
.
.
.
