Proteopedia:Hot News

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (17:29, 12 October 2025) (edit) (undo)
 
(56 intermediate revisions not shown.)
Line 1: Line 1:
-
<div style='font-size:1.2em; padding:4px; font-weight:bold;'>''TheScientist Magazine'' "Labby Award" Winner</div>
+
<table align="right"><tr><td>
-
[[Image:Labbies.png|50px|right]]
+
[[Image:Mof-5-from-2025-chem-nobel.png]]
-
:Proteopedia is the winner of the [http://www.f1000scientist.com/article/display/57649/ 2010 ''TheScientist'' "Best Science Website" Labby Awards]. Congratulations to all Proteopedia Users!
+
</td></tr><tr><td>
-
 
+
A metal-organic framework. Figure 5 from [https://www.nobelprize.org/uploads/2025/10/advanced-chemistryprize2025.pdf Scientific Background to the Nobel Prize in Chemistry 2025].
-
<div style='font-size:1.2em; padding:4px; font-weight:bold;'>Publish your Proteopedia Page in ''BAMBED''</div>
+
</td></tr></table>
-
[[Image:BAMBED.gif|50px|right]]
+
* October 2025: The [https://www.nobelprize.org/prizes/chemistry/2025/press-release/ Nobel Prize in Chemistry] recognizes the development of [[Metal-Organic Framework]]s that have a multitude of potential applications. These are similar to [[Metal-Ligand Polyhedra]], but they form extended crystalline networks instead of discrete polyhedra.
-
:Proteopedia pages can now be submitted to the [[BAMBED|Journal of ''Biochemistry and Molecular Biology Education (BAMBED)'']] for peer-review and publication. [[Proteopedia:BAMBED|Submit your page]] and see the [http://onlinelibrary.wiley.com/doi/10.1002/bmb.v38:5/issuetoc Sept/Oct edition of ''BAMBED''].
+
* November 2024: [[How To Find A Structure]] is a new guide to finding an [[empirical models|empirical model]] for a protein of interest, choosing which empirical structure is best, and getting an AlphaFold-predicted structure when no empirical structures are available.
-
 
+
* November 2024: [[How to predict structures with AlphaFold]] has been updated with instructions for the latest AlphaFold3 Server.
-
<div style='font-size:1.2em; padding:4px; font-weight:bold;'>''Journal of Biological Inorganic Chemistry''</div>
+
* November 2024: A handful of case studies illustrate what [[Nobel_Prizes_for_3D_Molecular_Structure#2020-2029|Nobel-Prize]] winning AlphaFold3 [[User:Eric_Martz/AlphaFold3_case_studies|can, and cannot, predict]].
-
[[Image:JBIC.jpg|50px|right]]
+
* November 2024: There is a new guide to being aware of, and dealing with [[missing residues and incomplete sidechains]].
-
:The ''[[Journal of Biological Inorganic Chemistry|Journal of Biological Inorganic Chemistry (JBIC)]]'' now publishes Interactive 3D Complements in Proteopedia for each of their macromolecular structure papers. See the [[Journal_of_Biological_Inorganic_Chemistry|'''list''']] of such articles and their Interactive 3D Complement pages in Proteopedia.
+
* March 2024: Professors are using Proteopedia for class projects in Brazil, Czech Republic, France, and various states in the USA. See the updated [[Proteopedia:News#Adoptions_in_College_and_University_Classes|Adoptions in College and University Classes]].
-
 
+
* What happens if a SARS-CoV-2 coronavirus enters your lung? See a clear explanation at [[Lifecycle of SARS-CoV-2]]
-
<div style='font-size:1.2em; padding:4px; font-weight:bold;'>''Open Researcher and Contributor ID (ORCID)''</div>
+
* July 2022: <i class="fas fa-walking"></i> <i class="fas fa-running"></i> [[Exercise-induced N-lactoyl-phenylalanine, appetite and obesity]] <i class="fas fa-running"></i> <i class="fas fa-walking"></i>
-
:Proteopedia participates in the [http://dev.orcid.org/directory/p Open Researcher and Contributor ID] (ORCID) organization to help solving the long-standing name ambiguity problem in scholarly communication.
+
* <i class="far fa-star bg-yellow"></i> <b>5,000 users!!</b> <i class="far fa-star bg-yellow"></i> On December 4, 2021, the number of Proteopedia users went over 5,000. The 5,000th user is from Juniata College, Huntingdon, Pennsylvania, US
 +
* ''AlphaFold protein structure predictions - a step change for biology'', an electronic talk by EBI staff for students and early career researchers via FEBS Junior Sections, Oct. 26, 2021, 19:00 CEST. [https://network.febs.org/posts/alphafold-protein-structure-predictions-a-step-change-for-biology Announcement]. [https://us02web.zoom.us/meeting/register/tZApduCurT0tGNLtFy1Vx4URQ3_kgxLlh2hX Registration].
 +
* A practical guide to teaching with Proteopedia <ref>doi 10.1002/bmb.21548</ref>
 +
{| align="right"
 +
|-
 +
|
 +
<imagemap>
 +
Image:Animated_cavity.gif|frame|How to display cavities, pockets, and tunnels.
 +
default [[Jmol/Cavities_pockets_and_tunnels]]
 +
</imagemap>
 +
|}
 +
* January 2021: How to display cavities, pockets, and tunnels? [[Jmol/Cavities_pockets_and_tunnels]]
 +
* December 2020: What is changing on SARS-CoV-2 virus and what this means for humanity? [[SARS-CoV-2 spike protein mutations]].
 +
* August 2020: An animation of coronavirus spike protein showing the [[SARS-CoV-2 spike protein fusion transformation]].
 +
* July 2020: An animation of coronavirus spike protein showing [[SARS-CoV-2 protein S priming by furin]].
 +
* March 2020: New Proteopedia page [http://proteopedia.org/w/Coronavirus_Disease_2019_(COVID-19) focused on the Coronavirus 2019 (COVID-19)].
 +
* January 2019: New [http://proteopedia.org/cgi-bin/morph morphing] feature for Proteopedia, powered by PyMOL from from Schrodinger.
 +
* January, 2018: [[10th Anniversary Celebration Conference]], University of Massachusetts, Amherst, USA. [[Proteopedia:Scrapbook|Group Photo of Participants]].
 +
* September, 2017: A workshop based on Proteopedia was held at the [https://www.weizmann.ac.il/conferences/NHBMB2017 New Horizons in Biochemistry & Molecular Biology Education] Conference, jointly organised by FEBS and IUBMB and hosted at the Weizmann Institute of Science.
 +
* June, 2016: [[Help:Making animations for Powerpoint|Animate any Proteopedia scene in Powerpoint]].
 +
* June, 2016: Proteopedia uses the [[Biological_Unit|Biological Assemblies]] from [http://www.ebi.ac.uk/pdbe PDBe] as the default scenes for all PDB entry pages. Thus, based on the curation by [http://www.ebi.ac.uk EBI] (host for PDBe) the most biologically significant structure is shown.
 +
* June, 2015: [[Proteopedia:Scrapbook#Awards|Award Ceremony]] for the the Proteopedia Award at the ICSG2015 - Deep Sequencing Meets Structural Biology, awarded on 10-Jun-2015 at the Weizmann Institute of Science
 +
* December, 2014, [http://confchem.ccce.divched.org/2014FallCCCENLP9 Talking about Proteopedia] on 12/04/14-12/06/14, a live online talk organised by DivCHED CCCE: Committee on Computers in Chemical Education
 +
* October, 2014 [http://bit.ly/P14UAH Course] in Spanish/English on Proteopedia and its uses to study, display and teach macromolecules.
 +
* [[Create_fast_pages|How to create fast loading pages]] in Proteopedia.
 +
* [[Java#How_to_be_as_safe_as_possible_with_Java|How to be as safe as possible with Java]]
 +
* [[Main_Page_News#Proteopedia_on_iPads!|Proteopedia on iPads!]]
 +
* [[Main_Page_News#What_version_of_Jmol_is_running?|What version of Jmol is running?]]
 +
* [[Main_Page_News#Proteopedia_status|Proteopedia status]]
 +
* [[Main_Page_News#Awards|Awards]]
 +
<references/>

Current revision

Image:Mof-5-from-2025-chem-nobel.png

A metal-organic framework. Figure 5 from Scientific Background to the Nobel Prize in Chemistry 2025.

How to display cavities, pockets, and tunnels.About this image
How to display cavities, pockets, and tunnels.
  1. ↑ Castro C, Johnson RJ, Kieffer B, Means JA, Taylor A, Telford J, Thompson LK, Sussman JL, Prilusky J, Theis K. A practical guide to teaching with Proteopedia. Biochem Mol Biol Educ. 2021 Jun 3. doi: 10.1002/bmb.21548. PMID:34080750 doi:http://dx.doi.org/10.1002/bmb.21548
Retrieved from "http://52.214.119.220/wiki/index.php/Proteopedia:Hot_News"
Personal tools