This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
User:Eric Martz/Virus capsid visualization resources
From Proteopedia
< User:Eric Martz(Difference between revisions)
(New page: ==Virus Capsids in Proteopedia== * Virus coat protein) |
|||
| (47 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
==Virus Capsids in Proteopedia== | ==Virus Capsids in Proteopedia== | ||
| + | Articles marked [[Image:Starf-18px.png]] have 300 or more words, 4 or more green links and 4 or more literature citations. [[Image:Star-18px.png]] marks honorable mentions that are well developed but do not meet the previous arbitrary criteria. | ||
| + | * [[Adeno-Associated Virus]] 3D printed models | ||
| + | * [[Canine parvovirus|Canine parvovirus capsid]] | ||
| + | * [[Cowpea Chlorotic Mottle Virus]] capsid | ||
| + | * Ebola: [[Journal:Acta_Cryst_F:S2053230X19004424|Structure of the Ebola virus nucleoprotein - RNA complex]] | ||
| + | * [[Image:Starf-18px.png]] [[Hiv-1 gag|Gag of HIV-1]] | ||
| + | * [[Gag polyprotein]], part of the capsid of HIV and other retroviruses. | ||
| + | * [[Image:Starf-18px.png]] Human papilloma virus: [[Major capsid protein L1|HPV major capsid protein L1]], basis for the Gardasil 9 vaccine. | ||
| + | * [[Human rhinovirus|Rhinovirus, human]] | ||
| + | * [[Ann Taylor/sandbox Norovirus oligosaccaride binding|Norovirus oligosaccaride binding]] | ||
| + | * [[Image:Star-18px.png]] [[Journal:PLoS_ONE:1|Polio virus capsid]] | ||
| + | * [[SV40 Capsid Simplified]] overlays the capsid with its geometric icosahedron. | ||
| + | * [[Image:Star-18px.png]] [[Tobacco Mosaic Virus]] | ||
| + | * [[Viral capsids]] *** | ||
* [[Virus coat protein]] | * [[Virus coat protein]] | ||
| + | * [[Art:Zika virus|Zika virus -- Art]] | ||
| + | * [[Hugo Heringer de Almeida/5YGH|Zika virus capsid protein]] | ||
| + | |||
| + | *** Needs further examination. | ||
| + | |||
| + | ==Lists of Links== | ||
| + | * HIV: [[Human Immunodeficiency Virus]] has a list of links to more than 20 related articles in Proteopedia. | ||
| + | * [[Virus coat proteins 3D structures]] | ||
| + | |||
| + | ==External Virus Capsid Resources== | ||
| + | * [https://pdb101.rcsb.org/ Molecule of the Month] at the RCSB PDB offers: | ||
| + | ** [https://pdb101.rcsb.org/learn/flyers-posters-and-calendars/poster/200-icosahedral-viruses 200 Icosahedral Viruses from the PDB] offers a poster with virus capsids arranged by size, and colored by the number of protein chains/capsid (60 to 8,280). The poster is available with or without [[PDB codes]]. | ||
| + | ** [https://pdb101.rcsb.org/motm/132 Adenovirus Capsid] has long fibers extending from its vertices. | ||
| + | ** [https://pdb101.rcsb.org/motm/163 HIV Capsid]. | ||
| + | ** [https://pdb101.rcsb.org/motm/221 HPV: Human Papillomavirus and Vaccines]. | ||
| + | ** [https://pdb101.rcsb.org/learn/paper-models Paper models of viruses] can be constructed using instructions provided. | ||
| + | ** [https://pdb101.rcsb.org/motm/200 Quasisymmetry in Icosahedral Viruses] explains how icosahedral capsids of different sizes assemble from copies of a single subunit protein chain, and explains triangulation numbers with examples. | ||
| + | |||
| + | * [https://viperdb.scripps.edu/ VIPERdb / VIrus Particle ExploreR database] includes: | ||
| + | ** Static images of virus capsids organized by taxa. | ||
| + | |||
| + | * The [https://viralzone.expasy.org/885 Virion Section] of the [https://viralzone.expasy.org/ ViralZone] offers schematics for triangulation numbers with links to virus taxa, UniProt, etc. See also [https://viralzone.expasy.org/750 Browse by Virion]. | ||
| + | |||
| + | ==Notes== | ||
| + | * [[User:Jaime Prilusky/Test/4v99]] shows a capsid available only in mmCIF format. | ||
| + | * [[User:Jaime Prilusky/Test/6ncl]] Giant virus, mmCIF only. | ||
Current revision
Contents |
Virus Capsids in Proteopedia
Articles marked 
have 300 or more words, 4 or more green links and 4 or more literature citations. 
marks honorable mentions that are well developed but do not meet the previous arbitrary criteria.
- Adeno-Associated Virus 3D printed models
- Canine parvovirus capsid
- Cowpea Chlorotic Mottle Virus capsid
- Ebola: Structure of the Ebola virus nucleoprotein - RNA complex
-
Gag of HIV-1
- Gag polyprotein, part of the capsid of HIV and other retroviruses.
- Human papilloma virus: HPV major capsid protein L1, basis for the Gardasil 9 vaccine.
- Rhinovirus, human
- Norovirus oligosaccaride binding
-
Polio virus capsid
- SV40 Capsid Simplified overlays the capsid with its geometric icosahedron.
- Tobacco Mosaic Virus
- Viral capsids ***
- Virus coat protein
- Zika virus -- Art
- Zika virus capsid protein
*** Needs further examination.
Lists of Links
- HIV: Human Immunodeficiency Virus has a list of links to more than 20 related articles in Proteopedia.
- Virus coat proteins 3D structures
External Virus Capsid Resources
- Molecule of the Month at the RCSB PDB offers:
- 200 Icosahedral Viruses from the PDB offers a poster with virus capsids arranged by size, and colored by the number of protein chains/capsid (60 to 8,280). The poster is available with or without PDB codes.
- Adenovirus Capsid has long fibers extending from its vertices.
- HIV Capsid.
- HPV: Human Papillomavirus and Vaccines.
- Paper models of viruses can be constructed using instructions provided.
- Quasisymmetry in Icosahedral Viruses explains how icosahedral capsids of different sizes assemble from copies of a single subunit protein chain, and explains triangulation numbers with examples.
- VIPERdb / VIrus Particle ExploreR database includes:
- Static images of virus capsids organized by taxa.
- The Virion Section of the ViralZone offers schematics for triangulation numbers with links to virus taxa, UniProt, etc. See also Browse by Virion.
Notes
- User:Jaime Prilusky/Test/4v99 shows a capsid available only in mmCIF format.
- User:Jaime Prilusky/Test/6ncl Giant virus, mmCIF only.
