User:Eric Martz/Virus capsid visualization resources
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==Virus Capsids in Proteopedia== | ==Virus Capsids in Proteopedia== | ||
Articles marked [[Image:Starf-18px.png]] have 300 or more words, 4 or more green links and 4 or more literature citations. [[Image:Star-18px.png]] marks honorable mentions that are well developed but do not meet the previous arbitrary criteria. | Articles marked [[Image:Starf-18px.png]] have 300 or more words, 4 or more green links and 4 or more literature citations. [[Image:Star-18px.png]] marks honorable mentions that are well developed but do not meet the previous arbitrary criteria. | ||
| + | * [[Adeno-Associated Virus]] 3D printed models | ||
* [[Canine parvovirus|Canine parvovirus capsid]] | * [[Canine parvovirus|Canine parvovirus capsid]] | ||
* [[Cowpea Chlorotic Mottle Virus]] capsid | * [[Cowpea Chlorotic Mottle Virus]] capsid | ||
| Line 6: | Line 7: | ||
* [[Image:Starf-18px.png]] [[Hiv-1 gag|Gag of HIV-1]] | * [[Image:Starf-18px.png]] [[Hiv-1 gag|Gag of HIV-1]] | ||
* [[Gag polyprotein]], part of the capsid of HIV and other retroviruses. | * [[Gag polyprotein]], part of the capsid of HIV and other retroviruses. | ||
| - | * HIV: [[Human Immunodeficiency Virus]] has a list of links to more than 20 related articles in Proteopedia. | ||
* [[Image:Starf-18px.png]] Human papilloma virus: [[Major capsid protein L1|HPV major capsid protein L1]], basis for the Gardasil 9 vaccine. | * [[Image:Starf-18px.png]] Human papilloma virus: [[Major capsid protein L1|HPV major capsid protein L1]], basis for the Gardasil 9 vaccine. | ||
* [[Human rhinovirus|Rhinovirus, human]] | * [[Human rhinovirus|Rhinovirus, human]] | ||
| + | * [[Ann Taylor/sandbox Norovirus oligosaccaride binding|Norovirus oligosaccaride binding]] | ||
* [[Image:Star-18px.png]] [[Journal:PLoS_ONE:1|Polio virus capsid]] | * [[Image:Star-18px.png]] [[Journal:PLoS_ONE:1|Polio virus capsid]] | ||
| - | * [[SV40 Capsid Simplified]] | + | * [[SV40 Capsid Simplified]] overlays the capsid with its geometric icosahedron. |
| - | * [[Tobacco Mosaic Virus]] | + | * [[Image:Star-18px.png]] [[Tobacco Mosaic Virus]] |
* [[Viral capsids]] *** | * [[Viral capsids]] *** | ||
* [[Virus coat protein]] | * [[Virus coat protein]] | ||
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* [[Hugo Heringer de Almeida/5YGH|Zika virus capsid protein]] | * [[Hugo Heringer de Almeida/5YGH|Zika virus capsid protein]] | ||
| - | *** Needs further examination. | + | *** Needs further examination. |
| + | |||
| + | ==Lists of Links== | ||
| + | * HIV: [[Human Immunodeficiency Virus]] has a list of links to more than 20 related articles in Proteopedia. | ||
| + | * [[Virus coat proteins 3D structures]] | ||
| + | |||
| + | ==External Virus Capsid Resources== | ||
| + | * [https://pdb101.rcsb.org/ Molecule of the Month] at the RCSB PDB offers: | ||
| + | ** [https://pdb101.rcsb.org/learn/flyers-posters-and-calendars/poster/200-icosahedral-viruses 200 Icosahedral Viruses from the PDB] offers a poster with virus capsids arranged by size, and colored by the number of protein chains/capsid (60 to 8,280). The poster is available with or without [[PDB codes]]. | ||
| + | ** [https://pdb101.rcsb.org/motm/132 Adenovirus Capsid] has long fibers extending from its vertices. | ||
| + | ** [https://pdb101.rcsb.org/motm/163 HIV Capsid]. | ||
| + | ** [https://pdb101.rcsb.org/motm/221 HPV: Human Papillomavirus and Vaccines]. | ||
| + | ** [https://pdb101.rcsb.org/learn/paper-models Paper models of viruses] can be constructed using instructions provided. | ||
| + | ** [https://pdb101.rcsb.org/motm/200 Quasisymmetry in Icosahedral Viruses] explains how icosahedral capsids of different sizes assemble from copies of a single subunit protein chain, and explains triangulation numbers with examples. | ||
| + | |||
| + | * [https://viperdb.scripps.edu/ VIPERdb / VIrus Particle ExploreR database] includes: | ||
| + | ** Static images of virus capsids organized by taxa. | ||
| + | |||
| + | * The [https://viralzone.expasy.org/885 Virion Section] of the [https://viralzone.expasy.org/ ViralZone] offers schematics for triangulation numbers with links to virus taxa, UniProt, etc. See also [https://viralzone.expasy.org/750 Browse by Virion]. | ||
==Notes== | ==Notes== | ||
* [[User:Jaime Prilusky/Test/4v99]] shows a capsid available only in mmCIF format. | * [[User:Jaime Prilusky/Test/4v99]] shows a capsid available only in mmCIF format. | ||
| + | * [[User:Jaime Prilusky/Test/6ncl]] Giant virus, mmCIF only. | ||
Current revision
Contents |
Virus Capsids in Proteopedia
Articles marked 
have 300 or more words, 4 or more green links and 4 or more literature citations. 
marks honorable mentions that are well developed but do not meet the previous arbitrary criteria.
- Adeno-Associated Virus 3D printed models
- Canine parvovirus capsid
- Cowpea Chlorotic Mottle Virus capsid
- Ebola: Structure of the Ebola virus nucleoprotein - RNA complex
-
Gag of HIV-1
- Gag polyprotein, part of the capsid of HIV and other retroviruses.
- Human papilloma virus: HPV major capsid protein L1, basis for the Gardasil 9 vaccine.
- Rhinovirus, human
- Norovirus oligosaccaride binding
-
Polio virus capsid
- SV40 Capsid Simplified overlays the capsid with its geometric icosahedron.
- Tobacco Mosaic Virus
- Viral capsids ***
- Virus coat protein
- Zika virus -- Art
- Zika virus capsid protein
*** Needs further examination.
Lists of Links
- HIV: Human Immunodeficiency Virus has a list of links to more than 20 related articles in Proteopedia.
- Virus coat proteins 3D structures
External Virus Capsid Resources
- Molecule of the Month at the RCSB PDB offers:
- 200 Icosahedral Viruses from the PDB offers a poster with virus capsids arranged by size, and colored by the number of protein chains/capsid (60 to 8,280). The poster is available with or without PDB codes.
- Adenovirus Capsid has long fibers extending from its vertices.
- HIV Capsid.
- HPV: Human Papillomavirus and Vaccines.
- Paper models of viruses can be constructed using instructions provided.
- Quasisymmetry in Icosahedral Viruses explains how icosahedral capsids of different sizes assemble from copies of a single subunit protein chain, and explains triangulation numbers with examples.
- VIPERdb / VIrus Particle ExploreR database includes:
- Static images of virus capsids organized by taxa.
- The Virion Section of the ViralZone offers schematics for triangulation numbers with links to virus taxa, UniProt, etc. See also Browse by Virion.
Notes
- User:Jaime Prilusky/Test/4v99 shows a capsid available only in mmCIF format.
- User:Jaime Prilusky/Test/6ncl Giant virus, mmCIF only.
