User:Eric Martz/Virus capsid visualization resources
From Proteopedia
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** [https://pdb101.rcsb.org/learn/paper-models Paper models of viruses] can be constructed using instructions provided. | ** [https://pdb101.rcsb.org/learn/paper-models Paper models of viruses] can be constructed using instructions provided. | ||
** [https://pdb101.rcsb.org/motm/200 Quasisymmetry in Icosahedral Viruses] explains how icosahedral capsids of different sizes assemble from copies of a single subunit protein chain, and explains triangulation numbers with examples. | ** [https://pdb101.rcsb.org/motm/200 Quasisymmetry in Icosahedral Viruses] explains how icosahedral capsids of different sizes assemble from copies of a single subunit protein chain, and explains triangulation numbers with examples. | ||
| + | |||
| + | * The [https://viralzone.expasy.org/885 Virion Section] of the [https://viralzone.expasy.org/ ViralZone] offers schematics for triangulation numbers with links to virus taxa, UniProt, etc. | ||
==Notes== | ==Notes== | ||
* [[User:Jaime Prilusky/Test/4v99]] shows a capsid available only in mmCIF format. | * [[User:Jaime Prilusky/Test/4v99]] shows a capsid available only in mmCIF format. | ||
* [[User:Jaime Prilusky/Test/6ncl]] Giant virus, mmCIF only. | * [[User:Jaime Prilusky/Test/6ncl]] Giant virus, mmCIF only. | ||
Revision as of 23:52, 2 May 2022
Virus Capsids in Proteopedia
Articles marked 
have 300 or more words, 4 or more green links and 4 or more literature citations. 
marks honorable mentions that are well developed but do not meet the previous arbitrary criteria.
- Adeno-Associated Virus 3D printed models
- Canine parvovirus capsid
- Cowpea Chlorotic Mottle Virus capsid
- Ebola: Structure of the Ebola virus nucleoprotein - RNA complex
-
Gag of HIV-1
- Gag polyprotein, part of the capsid of HIV and other retroviruses.
- HIV: Human Immunodeficiency Virus has a list of links to more than 20 related articles in Proteopedia.
- Human papilloma virus: HPV major capsid protein L1, basis for the Gardasil 9 vaccine.
- Rhinovirus, human
- Norovirus oligosaccaride binding
-
Polio virus capsid
- SV40 Capsid Simplified
- Tobacco Mosaic Virus
- Viral capsids ***
- Virus coat protein
- Virus coat proteins 3D structures
- Zika virus -- Art
- Zika virus capsid protein
*** Needs further examination. All entries need evaluation for stars.
External Virus Capsid Resources
- Molecule of the Month at the RCSB PDB offers:
- 200 Icosahedral Viruses from the PDB offers a poster with virus capsids arranged by size, and colored by the number of protein chains/capsid (60 to 8,280). The poster is available with or without PDB codes.
- Adenovirus Capsid has long fibers extending from its vertices.
- HIV Capsid.
- HPV: Human Papillomavirus and Vaccines.
- Paper models of viruses can be constructed using instructions provided.
- Quasisymmetry in Icosahedral Viruses explains how icosahedral capsids of different sizes assemble from copies of a single subunit protein chain, and explains triangulation numbers with examples.
- The Virion Section of the ViralZone offers schematics for triangulation numbers with links to virus taxa, UniProt, etc.
Notes
- User:Jaime Prilusky/Test/4v99 shows a capsid available only in mmCIF format.
- User:Jaime Prilusky/Test/6ncl Giant virus, mmCIF only.
