This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
User:Eric Martz/Virus capsid visualization resources
From Proteopedia
(Difference between revisions)
(→External Virus Capsid Resources) |
|||
| Line 7: | Line 7: | ||
* [[Image:Starf-18px.png]] [[Hiv-1 gag|Gag of HIV-1]] | * [[Image:Starf-18px.png]] [[Hiv-1 gag|Gag of HIV-1]] | ||
* [[Gag polyprotein]], part of the capsid of HIV and other retroviruses. | * [[Gag polyprotein]], part of the capsid of HIV and other retroviruses. | ||
| - | * HIV: [[Human Immunodeficiency Virus]] has a list of links to more than 20 related articles in Proteopedia. | ||
* [[Image:Starf-18px.png]] Human papilloma virus: [[Major capsid protein L1|HPV major capsid protein L1]], basis for the Gardasil 9 vaccine. | * [[Image:Starf-18px.png]] Human papilloma virus: [[Major capsid protein L1|HPV major capsid protein L1]], basis for the Gardasil 9 vaccine. | ||
* [[Human rhinovirus|Rhinovirus, human]] | * [[Human rhinovirus|Rhinovirus, human]] | ||
| Line 21: | Line 20: | ||
*** Needs further examination. All entries need evaluation for stars. | *** Needs further examination. All entries need evaluation for stars. | ||
| + | |||
| + | ==Lists of Links== | ||
| + | * HIV: [[Human Immunodeficiency Virus]] has a list of links to more than 20 related articles in Proteopedia. | ||
==External Virus Capsid Resources== | ==External Virus Capsid Resources== | ||
Revision as of 23:43, 9 May 2022
Contents |
Virus Capsids in Proteopedia
Articles marked 
have 300 or more words, 4 or more green links and 4 or more literature citations. 
marks honorable mentions that are well developed but do not meet the previous arbitrary criteria.
- Adeno-Associated Virus 3D printed models
- Canine parvovirus capsid
- Cowpea Chlorotic Mottle Virus capsid
- Ebola: Structure of the Ebola virus nucleoprotein - RNA complex
-
Gag of HIV-1
- Gag polyprotein, part of the capsid of HIV and other retroviruses.
- Human papilloma virus: HPV major capsid protein L1, basis for the Gardasil 9 vaccine.
- Rhinovirus, human
- Norovirus oligosaccaride binding
-
Polio virus capsid
- SV40 Capsid Simplified
- Tobacco Mosaic Virus
- Viral capsids ***
- Virus coat protein
- Virus coat proteins 3D structures
- Zika virus -- Art
- Zika virus capsid protein
*** Needs further examination. All entries need evaluation for stars.
Lists of Links
- HIV: Human Immunodeficiency Virus has a list of links to more than 20 related articles in Proteopedia.
External Virus Capsid Resources
- Molecule of the Month at the RCSB PDB offers:
- 200 Icosahedral Viruses from the PDB offers a poster with virus capsids arranged by size, and colored by the number of protein chains/capsid (60 to 8,280). The poster is available with or without PDB codes.
- Adenovirus Capsid has long fibers extending from its vertices.
- HIV Capsid.
- HPV: Human Papillomavirus and Vaccines.
- Paper models of viruses can be constructed using instructions provided.
- Quasisymmetry in Icosahedral Viruses explains how icosahedral capsids of different sizes assemble from copies of a single subunit protein chain, and explains triangulation numbers with examples.
- VIPERdb / VIrus Particle ExploreR database includes:
- Static images of virus capsids organized by taxa.
- The Virion Section of the ViralZone offers schematics for triangulation numbers with links to virus taxa, UniProt, etc. See also Browse by Virion.
Notes
- User:Jaime Prilusky/Test/4v99 shows a capsid available only in mmCIF format.
- User:Jaime Prilusky/Test/6ncl Giant virus, mmCIF only.
