Tyrosine kinase 3D structures

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Revision as of 07:32, 14 June 2022 by Michal Harel (Talk | contribs)
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3D structures of tyrosine kinase

Updated on 14-June-2022 - For a general description of the protein see Tyrosine kinase {{#tree:id=OrganizedByTopic|openlevels=0|

  • NON-RECEPTOR TYROSINE KINASES - nRTK
  • Fyn tyrosine kinase (Domains: SH3 80-141; SH2 142-247; kinase 260-537)
  • Fyn complex
    • 1fyn, 4znx - hTK Fyn SH3 domain + peptide
    • 1nyf, 1nyg, 1a0n, 1azg - hTK Fyn SH3 domain + peptide – NMR
    • 1efn, 1avz - hTK Fyn SH3 domain + HIV Nef protein
    • 4d8d, 7d7s - hTK Fyn SH3 domain (mutant) + HIV Nef protein
    • 1m27 - hTK Fyn SH3 domain + SH2 domain protein 1A + SLAM peptide
    • 4d8d - hTK Fyn SH3 domain (mutant) + HIV Nef protein
    • 3ua7 – hTK Fyn SH3 domain + hepatitis virus peptide
    • 4eik - hTK Fyn SH3 domain + VSL12 peptide
    • 7a2w, 7a2x, 7a2y, 7a2z - hTK Fyn SH3 domain (mutant) + VSL12 peptide
    • 1aot, 1aou - hTK Fyn SH2 domain + phosphopeptide - NMR
    • 2dq7 – hTK kinase domain + staurosporine
  • Abelson tyrosine kinase
  • Abl1 SH2 domain residues 120-220
  • Abl1 SH3 domain residues 60-121
    • 5oaz - hTK SH3 domain
    • 1ju5 - hTK SH3 domain (mutant) + CRK SH2 domain + phosphopeptide - NMR
    • 1awo - hTK SH3 domain + phosphopeptide – NMR
    • 1bbz - hTK SH3 domain + peptide
    • 2o88 - hTK SH3 domain (mutant} + peptide
    • 4jjb, 4jjc, 4jjd - hTK abl SH3 domain
    • 4j9b, 3egu, 3eg2, 3eg3, 3eg0, 3eg1 - hTK abl SH3 domain (mutant)
    • 4j9c, 4j9e, 4j9i - hTK abl SH3 domain (mutant) + p17 peptide
    • 4j9d, 4j9f - hTK abl SH3 domain (mutant) + p0 peptide
    • 4j9g, 4j9h - hTK abl SH3 domain (mutant) + p7 peptide
    • 1abo - mTK SH3 domain + peptide
    • 1abq - mTK SH3 domain
  • Abl1 SH3-SH2 domain residues 57-218
    • 2abl - hTK SH3-SH2 domain
    • 2fo0 - hTK SH3-SH2 domain (mutant)
  • Abl1 regultory module residues 1-255
  • Abl1 kinase domain residues 229-512
  • Abl1 SH2-kinase domain residues 119-531
    • 4xey - hTK SH2-kinase domain
  • Abl1 SH3-SH2-kinase domain residues 1-531
    • 1opl - hTK SH3-SH2-kinase domain (mutant}
  • Abl1 F-actin binding domain residues 1007-1130
    • 1zzp - hTK abl F-actin binding domain – NMR
  • Abl2 SH2 domain residues 165-273
    • 4eih - hTK SH2 domain
    • 2ecd - hTK SH2 domain – NMR
  • Abl2 kinase domain residues 279-546
    • 3gvu - hTK kinase domain + Gleevec
    • 3hmi - hTK kinase domain + inhibitor
    • 2xyn, 4xli - hTK kinase domain + cancer drug
  • Abl2 C-terminal residues 1058-1182
    • 2kk1 – hTK C terminal – NMR
  • Anaplastic lymphoma kinase (Alk) or Alk tyrosine kinae receptor; Domains – Gly-rich 678-986; TG+EGF=like 648-1030; kinase 1093-1411
  • Csk tyrosine kinase
    • 3eac - hTK SH2 domain
    • 3eaz - hTK SH2 domain (mutant)
    • 2rsy - hTK SH2 domain + CBP phosphopeptide - NMR
    • 1csk - hTK SH3 domain
    • 1jeg - hTK SH3 domain + tyrosine phosphatase peptide - NMR
    • 1byg - hTK kinase domain + staurosporine
    • 3d7t, 3d7u - hTK kinase domain (mutant) + C-Src
    • 1k9a - TK C terminal - rat
  • p55-blk tyrosine kinase
    • 1blj, 1blk - mTK p55-blk SH2 domain – NMR
  • Src tyrosine kinase or proto-oncogene tyrosine protein kinase (Domains: SH3 85-140; SH2 140-251; kinase 253-535)
  • Src tyrosine kinase SH2 domain
  • Src tyrosine kinase SH3 domain
  • Src tyrosine kinase kinase domain residues 253-535
  • Src tyrosine kinase C terminal domain
  • Src tyrosine kinase SH2+SH3+kinase domains residues 85-535
    • 1ksw – hTK (mutant)+ ADP derivative
    • 1y57 – hTK + inhibitor
    • 4k11 – hTK (mutant) + inhibitor
    • 6f3f – mTK + ADP
  • Src tyrosine kinase SH2+SH3+kinase+C terminal domains
  • Src tyrosine kinase N terminal+SH2+SH3+kinase domains
    • 2h8h – hTK + inhibitor
  • Lymphocyte-specific tyrosine kinase Lck (Domains: SH3 58-118; SH2 122-225; kinase 230-500)
    • 1kik, 1h92 - hTK Lck SH3 domain – NMR
    • 2iim - hTK Lck SH3 domain
    • 4d8k, 1x27 - hTK Lck SH3-SH2 domain
    • 3lck - hTK Lck kinase domain
  • Lck complex
  • Syk - spleen tyrosine kinase
    • 1xba, 4xg2 – hSyk kinase domain residues 337-635
  • Syk complex
  • Itk/Tsk tyrosine kinase or interleukin-2 tyrosine kinase; domains – SH2 236-344; SH3 160-236; kinase 357-620
  • Zap-70 tyrosine kinase (Domains: SH2 1-259; kinase 327-606
    • 4k2r – hTK Zap-70
    • 2ozo - hTK Zap-70 (mutant)
    • 1m61 - hTK Zap-70 SH2 domain
  • Zap-70 complex
    • 2oq1, 4xz1 - hTK Zap-70 SH2 domain + peptide
    • 4xz0 - hTK Zap-70 SH2 domain + inhibitor
    • 1u59 - hTK Zap-70 kinase domain + staurosporine
  • Pyk2 tyrosine kinase or or protein-tyrosine kinase 2-β (Domains: kinase 414-692; FAT 861-1009)
    • 3cc6, 3fzo - hTK Pyk2 kinase domain
    • 3gm2 - hTK Pyk2 FAT domain
    • 3gm3 - hTK Pyk2 FAT domain (mutant)
    • 4eku – hTK Pyk2 FERM domain
    • 2lk4 - hTK Pyk2 FAT domain – NMR
  • Pyk2 complex
    • 3fzp - hTK Pyk2 kinase domain + ATPγS
    • 3fzr, 3fzs, 3fzt, 3h3c, 3et7, 5to8, 5tob, 4h1j, 4h1m - hTK Pyk2 kinase domain + inhibitor
    • 3gm1, 4r32 - hTK Pyk2 FAT domain + paxillin peptide
    • 4xek, 4xev, 4xef - hTK Pyk2 FAT domain + leupaxin peptide
    • 4h1j - hFAK2 kinase domain + pyrazole inhibitor
    • 3h3c - hFAK2 kinase domain + pyrimidine inhibitor
    • 4h1m - hFAK2 kinase domain + indole inhibitor
    • 3u3f – hFAK2 FAT domain (mutant) + paxillin LD2 motif
  • CapAB tyrosine kinase
    • 3bfv - SaTK CapA1/CapB2 – Staphylococcus aureus
    • 2ved - SaTK CapA1/CapB2 + Mg + ADP
  • Fer tyrosine kinase
    • 2kk6 - hTK Fer SH2 domain – NMR
    • 6kc4 - hTK Fer SH2 domain + phosphopeptide
  • Ptk6 tyrosine kinase or breast tumor kinase Brk
    • 1rja - hTK Ptk6 SH2 domain – NMR
    • 2kgt - hTK Ptk6 SH3 domain – NMR
    • 5d7v, 6cz2 - hTK Ptk6 kinase domain
    • 5da3, 6cz3, 6cz4 - hTK Ptk6 kinase domain + inhibitor
    • 5h2u - hTK Ptk6 kinase domain (mutant) + cancer drug
  • PtkA tyrosine kinase
    • 6f2x - TK PtkA – Mycobacterium tuberculosis - NMR
  • Lyn tyrosine kinase (Domains: SH3 39-101; SH2 115-229; kinase 239-512)
    • 4tzi - hTK Lyn SH2 domain
    • 6nmw - hTK Lyn SH3 domain
    • 1w1f - hTK Lyn SH3 domain – NMR
    • 1wa7 - hTK Lyn SH3 domain + peptide – NMR
    • 3a4o - hTK Lyn residues 233-512 + staurosporine
    • 5xy1 - hTK Lyn kinase domain + inhibitor
    • 2zv7 - mTK Lyn kinase domain
    • 2zv8 - mTK Lyn kinase domain + AMPPNP
    • 2zv9 - mTK Lyn kinase domain + PP2
    • 2zva - mTK Lyn kinase domain + cancer drug
  • Txk tyrosine kinase
    • 2dm0 - hTK Txk SH2 domain – NMR
  • Yes tyrosine kinase
    • 2hda - hTK Yes SH3 domain
    • 5mtj - hTK Yes SH2 domain + monobody
  • Tec tyrosine kinase
    • 2lul - hTK Tec PH domain - NMR
    • 1gl5 - hTK Tec SH3 domain - NMR
  • Fes/Fps tyrosine kinase
    • 1wqu, 2dcr - hTK Fes SH2 domain - NMR
    • 3bkb - hTK Fes SH2+kinase domain - NMR
    • 4dyl - hTK Fes F-Bar domain
    • 3cbl - hTK Fes SH2+kinase domain + peptide
    • 3cd3 - hTK Fes SH2+kinase domain + peptide + staurosporine
    • 4e93, 6jmf - hTK TFes + inhibitor
  • Etk tyrosine kinase
    • 3cio - EcTK Etk kinase domain – Escherichia coli
  • Wzc tyrosine kinase
    • 3la6 - EcTK Wzc kinase domain
    • 7ni2, 7nib - EcTK Wzc – Cryo EM
    • 7dhd - VvTK Wzc – Vibrio vulnificus
    • 7dhe, 7dhf - VvTK Wzc + inhibitor
  • Ros tyrosine kinase
    • 3zbf - hTK Ros kinase domain + cancer drug
    • 4uxl - hTK Ros kinase domain + inhibitor
  • Non-receptor Tyk2 tyrosine kinase (Domains: SH2+FERM 23-540; pseudokinase 541-880; kinase 880-1170)
  • Hck tyrosine kinase Domains: SH3 81-137; SH2 119-224; SH1 or kinase+C-terminal 225-525;
    • 3hck - hTK SH2 domain - NMR
    • 1bu1 - hTK SH3 domain
    • 4hck, 5hck - hTK SH3 domain - NMR
    • 2oj2, 2oi3 - hTK SH3 domain + peptide - NMR
    • 3rbb, 3rea, 3reb - hTK SH3 domain (mutant) + HIV NEF
    • 5nuh - hTK SH3 domain + SIV NEF
    • 4orz - hTK SH3 domain (mutant) + HIV NEF + single domain antibody
    • 3nhn - hTK SH3-SH2-linker domain
    • 4u5w - hTK Hck SH3-SH2 domains + NEF
    • 2c0i, 2c0o, 2c0t - hTK SH3-SH2-SH1 domain + inhibitor
    • 5h0b, 5h0e, 5h0g, 5h0h - hTK SH3-SH2-SH1 domain (mutant) + inhibitor
    • 2hk5, 5zj6 - hTK kinase domain + inhibitor
    • 1qcf, 3vrz, 3vs0, 3vs3, 3vs4, 3vs5, 3vs6, 3vs7 - hTK SH3-SH2-kinase-C-terminal domain + inhibitor
    • 3vry, 3vs1, 3vs2 - hTK SH3-SH2-kinase-C-terminal domain (mutant) + inhibitor
    • 1ad5 - hTK SH3-SH2-kinase-C-terminal domain + AMPPNP
    • 2hck - hTK SH3-SH2-kinase-C-terminal domain + quercetin
    • 4lud, 4lue - hTK SH2+SH3+kinase+C-terrminal domain (mutant) + fluorescent compound
  • Ack1 tyrosine kinase or activated cdc42 kinase 1
  • RECEPTOR TYROSINE KINASES - RTK
  • Bruton’s tyrosine kinase (Domains: PH 1-170; SH3 216-273; SH2 273-378; kinase 378-659)
    • 2z0p - hTK Btk PH domain
    • 1btk – hTK Btk PH domain (mutant)
    • 3p08, 1k2p - hTK Btk kinase domain
    • 1aww, 1awx, 1qly - hTK Btk SH3 domain – NMR
    • 2ge9 - hTK Btk SH2 domain – NMR
    • 4xi2 - hTK Btk SH3-SH2-kinase domain
    • 4y95 - bTK Btk kinase domain (mutant) - bovine
    • 4y93 - bTK Btk PH+kinase domains (mutant)
  • Btk complex
  • Kit tyrosine kinase or mast/stem cell growth factor receptor Kit; Domains – extracellular 1-519; kinase 547-693, 754-935
    • 2ec8 - hTK Kit extracellular domain
    • 3g0e, 3g0f - hTK Kit kinase domain (mutant) + cancer drug
    • 2e9w - hTK Kit extracellular domain + stem cell factor
    • 1t45, 4pgz - hTK Kit kinase domain
    • 1t46, 4u0i, 6mob, 6kla - hTK Kit kinase domain + cancer drug
    • 6gqj, 6gql, 6gqm, 6gqk - hTK Kit kinase domain (mutant) + cancer drug
    • 6itv, 6itt, 6xv9, 6xva, 6xvb, 7khg, 7khj, 7khk - hTK Kit kinase domain + inhibitor
    • 4hvs, 6hh1 - hTK Kit kinase domain (mutant) + inhibitor
    • 2o26 - hTK Kit residues 25-314 + Kit ligand
    • 4k94, 4k9e - hTK Kit residues 308-518 + antibody
  • Mer tyrosine kinase (Domains: FN3 373-483; kinase 570-864)
    • 2dbj - hTK Mer FN3 domain – NMR
    • 2p0c - hTK Mer kinase domain
  • Mer complex
  • Bone marrow tyrosine kinase; Domains – kinase 411-675
    • 2ekx - hTK Bmx SH2 domain – NMR
    • 2ys2 - hTK Bmx Btk motif – NMR
  • Bone marrow tyrosine kinase complex
    • 3sxr - hTK Bmx kinase domain (mutant) + anti-cancer drug
    • 3sxs, 6i99 - hTK Bmx kinase domain (mutant) + inhibitor
  • MuSK tyrosine kinase
    • 3hkl - rTK MuSK Fz-Crd domain
    • 1luf, 2iep - rTK MuSK cytoplasmic domain
  • Sgk223 tyrosine kinase or sugen kinase
  • Matk tyrosine kinase or megakaryocyte-associated tyrosine-protein kinase
    • 3us4 - hTK Matk SH2 domain
    • 1x6g - hTK Matk SH3 domain - NMR
  • Flt3 tyrosine kinase
    • 1rjb - hTK Flt3 kinase domain
    • 4rt7, 6il3, 5x02 - hTK Flt3 kinase domain + inhibitor
    • 6jqr - hTK Flt3 kinase domain + leukemia drug<br /
    • 4xuf - hTK Flt3 kinase domain (mutant) + leukemia drug
    • 3qs7, 3qs9 - hTK Flt3 kinase domain + SL cytokine<br /
  • Tie2 tyrosine kinase
    • 1fvr - hTK Tie2 kinase domain
  • Ret tyrosine kinase or proto-oncogene tyrosine protein kinase receptor Ret
- hTK Ret kinase domain + cancer drug
    • 4ux8 - hTK Ret extracellular domain + GFR alpha 1

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Michal Harel, Joel L. Sussman

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