Proteopedia:What's New
From Proteopedia
What's New in Proteopedia?
This page lists new pages, substantially updated pages, and new capabilities within Proteopedia. In contrast, Proteopedia:News lists external news such as adoptions, blogs, press, meetings, seminars and workshops about Proteopedia.
A major purpose of this page is to make it easier for users to find out about new user-created pages with substantial content. Only user-created pages that have substantial content (at least one paragraph of user-added text with three or more green links), and that are reasonably complete should be listed below. Pages that are started, but not yet completed, should not be listed until they are reasonably complete. Automatically seeded new pages, titled with PDB codes, are not listed here[1]. Minor updates to existing pages should not be listed.
Please add new items at the top. If a linked page is not new, but has been updated with substantial new content, please say so. Each page's history tab (at the top) shows when it was created and the date of each update.
<- signifies a page that redirects to another page.
Contents |
October, 2008
- Poly(A) Polymerase, 2q66: A new section complementing this month's article in Molecule of the Month.
- Confirmation of a heterodimer predicted by computational genomic analysis (neither chain could be crystallized alone): 2g38.
- Complex Of S. griseus Proteinase B And Polypeptide Chymotrypsin Inhibitor-1 From Russet Burbank Potato Tubers, 4sgb.
- Structures Saving the Most Lives is a new list added to the Highest impact structures page originally created in February, 2008.
- Nobel Prizes for 3D Molecular Structure
- Morphs: Although this page was created in March, 2008, most of its content was added this month.
- Proteopedia: Email list
- What's New in Proteopedia? (this page).
September, 2008
- Anticancer Prodrug CPT-11 complexed with Torpedo californica Acetylcholinesterase 1u65
- Avian Influenza Neuraminidase, Tamiflu and Relenza
- Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis.
- TEM1-β-Lactamase/ β-Lactamase Inhibitor Protein (BLIP), 2b5r and 1s0w.
- Acid-beta-glucosidase covalently bound to conduritol B epoxide, 1y7v.
- Ribonuclease A, 1rta has a new section complementing this month's article in Molecule of the Month.
- DRuMS, standard color schemes for macromolecules, and color key templates for use in Proteopedia.
- Glutamine Synthetase, which includes instructions on how to use the Jmol console for advanced scene authoring.
August, 2008
- HIV-1 protease
- Pyruvate phosphate dikinase with a morph of the catalytic reaction and conformational changes.
- Enzyme I of the Phosphoenolpyruvate:Sugar Phosphotransferase System with a morph of the catalytic reaction and conformational changes.
- Antizyme Inhibitor
- Selenocysteine Synthase, SelB Recognition is a new page complementing this month's article in Molecule of the Month.
- Teaching Strategies Using Proteopedia
- Protein structure lesson plan for BioSci 203
- Proteopedia: News
July, 2008
- Biotin Protein Ligase
- YAGE, A Prophage Protein Belonging To The Dihydrodipicolinic Acid Synthase Family From E. Coli K12, 2v9d.
- Ramachandran Plots
- Flexibility of aromatic residues in acetylcholinesterase
- Horizontal gene transfer ssDNA binding protein from Agrobacterium tumefaciens VirE1/VirE2=3btp
- Proteopedia:Page of the Year Competition
- Student Projects
June 2008
- Computational design of a Kemp elimination catalyst 2rkx.
- Recoverin, a calcium-activated myristoyl switch
- G protein, ras oncogene: James_D_Watson/Proteins_Intro.
- Ribulose-1,5-bisphosphate carboxylase/oxygenase uses the Kinemage applet.
- Acid-beta-glucosidase
- Rop protein
- Institute of Clinical Biochemistry, Oslo, Norway.
- Research Groups <- Institutes
- Teaching Scenes, Tutorials, and Educators' Pages
About Macromolecular Structure
- About Macromolecular Structure <- About Protein Structure
- Amino Acids
- Asymmetric Unit
- Atomic coordinate file
- Biological Unit <- Quaternary structure
- Free R
- NMR Ensembles of Models
- PDB identification code
- Quality assessment for molecular models
- R value
- Resolution
- Temperature value <- Disorder, B value
- Unit cell
May 2008
- Acetylcholinesterase
- 2ace with an overview of the significance of this, the first acetylcholinesterase structure.
- Anti-Alzheimer's drug, Aricept, complexed with acetylcholinesterase 1eve.
- Tacrine Binding To Aromatic Residues In The Active-site Gorge Of Acetylcholinesterase, 1acj.
- Serum Paraoxonase-1 (PON1) via directed evolution 1v04.
- Human acid-beta-glucosidase, 1ogs.
- Photosystem II, an undergraduate project.
- Ozonolysis: cool animation of a chemical reaction!
April 2008
- Acetylcholinesterase inhibited by nerve agent soman 1som.
- Highest resolution acetylcholinesterase so far, 1ea5.
- Tetramerization domain of acetylcholinesterase 1vzj.
- Locations of mutations in oncogene phosphatidylinositol 3-kinase 2rd0, with many of the published figures made interactive in Jmol.
- Escherichia coli GlpG, an integral membrane protein rhomboid protease, unique in cleaving the transmembrane domains of other membrane proteins, 2ic8.
- Major Histocompatibility Complex Class I (no Jmol yet)
- Personal favorites
- Believe It or Not!
- Help:Protected Pages
March 2008
- Conformational flexibility in the peripheral site of Torpedo californica acetylecholinesterase revealed by the complex structure with a bifunctional inhibitor, 2cek.
- Proton Channels
- Proteopedia:Namespaces
- Proteopedia:About
- SGAP Streptomyces griseus Aminopeptidase (SGAP) (no Jmol)
February 2008
- Hemoglobin
- Highest impact structures of all time.
- Nucleosomes
- Scorpion alpha-toxin 1qlh.
- Peptide
- Proteopedia:Problems
- Personal favorites
January 2008
October-December 2007
- Serine Protease
- Nqo1 NADH quinone oxidoreductase (NQO1) in complex with its potent inhibitor dicoumarol.
- 1xjo S. griseus aminopeptidase.
- Glycine
- Bacterial Intein-Like Domains (BILs) (no Jmol, no green links)
- Hint auto-proteolytic protein-processing domains (no Jmol, no green links)
See Also
- Proteopedia:News
- Proteopedia: Email list
- Newest Pages appears to list only the current month, and mostly automatically seeded pages.
- Most Recent Changes
- Topic pages
Notes
Proteopedia Page Contributors and Editors (what is this?)
Eric Martz, Wayne Decatur, Alice Harmon, Jaime Prilusky, Karl Oberholser, Amy Kerzmann, R. Jeremy Johnson, Joel L. Sussman, Matthew Tugwell, Cinting Lim, Taya O'Neill, Ralf Stephan, Tzviya Zeev-Ben-Mordehai
