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1. FirstGlance in Jmol Literature Citations (30,325 bytes)
   1: ...), and all were verified to cite ''FirstGlance in Jmol''.
   3: [[FirstGlance in Jmol]] offers, since 2006, free visualization and anal...
   4: * [[FirstGlance in Jmol]]
   5: ....htm#unique Unique Capabilities of FirstGlance in Jmol]
   7: ...Index]], a list of resources about FirstGlance in Jmol, including all the relevant pages in Proteopedia.
2. User:Jaime Prilusky/Test/Jmol versions (1,239 bytes)
   23: ... Compare to rendering with the default version of Jmol (14.31.8)
3. Image:Sticks jmol.png (0 bytes)
4. Image:New Surface Bonds Jmol.png (0 bytes)
5. Sandbox Jmol Jane (1,030 bytes)
   2: ...on='Caption for this structure' scene='10/1081074/Jmol_jane_1eve/1'>
   3: This is a default text for your page '''Sandbox Jmol Jane'''. Click above on '''edit this page''' to m...
   4: ...ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
   7: <scene name='10/1081074/Jmol_jane_1eve/1'>Jmol_Jane_1eve</scene>
6. Image:2H5I Dimer.jmol (0 bytes)
7. Jmol/Cavities pockets and tunnels (22,245 bytes)
   2: Jmol can find and display cavities, pockets, and tunne...
   8: ...e generated in the [[Jmol/Application|stand-alone Jmol application]] and captured "cached" in a PNGJ fil...
   11: Jmol uses two "rolling" spherical probes to identify c...
   20: The simplest Jmol cavity command is
   28: ...d error, a good minset number is 1000, making the Jmol command:
8. Image:012 3b jmol 16 2 450 450.png (0 bytes)
9. Image:Fig 03c jmol 14p31p8.png (0 bytes)
10. Image:Fig 03c jmol 14p31p8 450.png (0 bytes)
11. Image:Fig 03c jmol 14p31p8 white 450 center.png (0 bytes)
12. Image:Fig 03a jmol 16 2 21 450 center wireframe spacefill.png (0 bytes)
13. Image:012 2a jmol 16 3 450 450.png (0 bytes)
14. Image:012 2c jmol 16 3 450 450.png (0 bytes)
15. Image:012 3c jmol 14 450 450.pngj (0 bytes)
16. Image:012 3c jmol 16 3 450 450.pngj (0 bytes)
17. Image:2hhd jmol state test.gif (86 bytes)
    1: Snapshot of Jmol 11.5.35 from which state script was obtained, see...
18. FirstGlance in Jmol (5,275 bytes)
    2: ...ot of [http://firstglance.jmol.org FirstGlance in Jmol]]]
    3: ...1d66]]). FirstGlance has many [http://firstglance.jmol.org/whatis.htm#unique unique and powerful capabil...
    5: ...ly to [http://firstglance.jmol.org FirstGlance in Jmol], you can enter any [[PDB code]], or upload a [[P...
    7: ...ules tinyurl.com/movingmolecules]. FirstGlance in Jmol version 4.0 was released August 15, 2022, with ne...
    9: ...s from menus and forms -- no familiarity with the Jmol command scripting language is required. Tooltips ...
19. Jmol (17,388 bytes)
    1: ...ks]]. An overview of other Jmol resources is at [[Jmol/Index]].
    5: ...[User:Eric_Martz/JSmol_Notes#JSmol_is_slower_than_Jmol|performs much faster]], but this enhanced perform...
    14: ==Jmol Has Two Forms==
    43: Proteopedia, [[FirstGlance in Jmol]], [http://molviz.org MolviZ.Org],
    50: OBSOLETE <font color="red"><b>Jmol_S</b></font> (in web browser)
20. User:James D Watson/Using Jmol (11,635 bytes)
    1: ==Introduction to Jmol==
    2: Jmol is a commonly used molecular graphics viewer. The...
    4: ...for you to interact with protein structures using Jmol:<UL>
    30: ...s section, we will represent selections using the Jmol menu in '''''this style'''''.<br/>
    37: ...globin molecule' scene='User:James_D_Watson/Using_Jmol/Haemoglobin_start/1'/>

Page text matches

1. Help:Editing (24,612 bytes)
   46: ...et are in the next section below. When there is a Jmol structure applet present in the page, you create ...
   50: When there is more than one Jmol structure applet on a page, scenes automatically ...
   52: ==Proteopedia Jmol Structure Applets==
   53: ...the molecular scene. The wikitext for inserting a Jmol structure applet must be entered on the page foll...
   57: ...em are Optional). For example, this generates the Jmol structure applet on this page:
2. Peptide (2,365 bytes)
   18: ...emoglobin Hemoglobin Tutorial] implemented with [[Jmol]] in July 2007.
3. CHEM2052 Tutorial (6,397 bytes)
   15: ...he structure. Alternatively, you can click on the Jmol symbol in the lower right-hand corner of each ima...
   18: ...ript><text>Click this button</text></jmolButton></jmol> to flip between structures.
4. Help:Contents (6,518 bytes)
   14: ... a window integrated into the page (often called "Jmol window"). As you read through the text of an entr...
   49: ...ails, see [[Jmol/Interactivity]]). Consult [[Help:Jmol]] for advanced 3D scenes. To look under the hood ...
5. Proteopedia:About (7,060 bytes)
   43: ...eopedia:Team|Proteopedia team]]. The [http://wiki.jmol.org/ JSmol object] is used to render the rotatabl...
   50: ...l]] have been made what they are today by [http://jmol.sourceforge.net/history/ many dedicated volunteer...
6. Scene authoring tools (23,035 bytes)
   6: ...T. In this case, first edit the page to include a Jmol window (using the [[Image:Structure buttons.JPG|5...
   18: ...s that someone viewing the page can load into the Jmol viewer by clicking on green links. A scene store...
   30: ..., while the right side of the user interface is a Jmol viewer to preview the scene as it is built.
   36: ... load molecule tab is used to load molecules into Jmol.
   42: ...oaded file can have various formats recognized by Jmol's "load" command. For example, you can load a .PN...
7. User:Karsten Theis/Linear interpolation (911 bytes)
   1: This is a Jmol script that does linear interpolation. You need t...
   18: To try it, right-click in the Jmol window to open the console, and then copy and pas...
8. User:Karsten Theis/Rigid body interpolation (4,709 bytes)
   1: ...erform supoerpositions and to create morph, see [[Jmol/Storymorph]].
   113: ... the following three lines while running in local Jmol app
9. User:Anna Leibinger/Sandbox 1 (11,577 bytes)
   2: ...ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the --[[User:Anna Lei...
10. Art:Cytochrome Wallpaper (391 bytes)
    6: ... was generated from [[1os6]] with the following [[Jmol]] command script: <br><pre>
11. FirstGlance in Jmol Literature Citations (30,325 bytes)
    1: ...), and all were verified to cite ''FirstGlance in Jmol''.
    3: [[FirstGlance in Jmol]] offers, since 2006, free visualization and anal...
    4: * [[FirstGlance in Jmol]]
    5: ....htm#unique Unique Capabilities of FirstGlance in Jmol]
    7: ...Index]], a list of resources about FirstGlance in Jmol, including all the relevant pages in Proteopedia.
12. User:Wayne Decatur/UNH BCHEM833 Structural Analysis Workshop Session Fall 2012 (17,130 bytes)
    28: ...pplications_Embedding_Jmol Applications Embedding Jmol] for many more
    30: **FirstGlance in Jmol (adopted by Nature <nowiki>[</nowiki>example [htt...
    31: ....org/index.php/Journals_Using_Jmol Journals Using Jmol] for more
    74: ...owed file types: png, jpg, jpeg, tiff, tif, gif, mgif, pdb, cif, mmcif, cml, mol, xyz, kin, mmol
    87: ...oinformatics.org/firstglance/fgij/ Firstglance in Jmol].
13. User:Chloe Tucker/Sandbox 1 (4,378 bytes)
    4: ...ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
14. Teaching Scenes, Tutorials, and Educators' Pages (12,171 bytes)
    63: ...ludes instructions for using Jmol commands in the Jmol console for advanced scene authoring.
15. Missing residues and incomplete sidechains (25,887 bytes)
    4: ... and [[cation-pi interactions]]. [[FirstGlance in Jmol]] makes it less likely, compared to other popular...
    22: Unlike other viewers, [[FirstGlance in Jmol]] ensures that you are aware of missing ends by m...
    90: ...e.jmol.org/fg.htm?mol=2ace 2ace in FirstGlance in Jmol]
    96: ... file can then be uploaded to [http://firstglance.jmol.org FirstGlance]. [https://www.ncbi.nlm.nih.gov/S...
    144: [[Image:Morph-5nyp-af-cut2.gif]]
16. User:Jaime Prilusky/Test/Jmol versions (1,239 bytes)
    23: ... Compare to rendering with the default version of Jmol (14.31.8)
17. Sandbox 16p3p1 (939 bytes)
    4: ...ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
18. User:Clara Fernández Vidal/sandbox1 (955 bytes)
    5: ...ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
19. Sandbox Muzic (1,567 bytes)
    4: ...ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
20. Sandbox I3DC 001 (941 bytes)
    4: ...ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.

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