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- Image:Figure 5 PyRx for Proteopedia Page.JPG (0 bytes)
- Image:PyRx.png (0 bytes)
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- BASIL2023GV1ZBS (7,907 bytes)
7: [[Image: FlowChart.png ]]
14: [[Image:BLASTP.png]]
19: [[Image:InterPro_Results_1ZBS.png]]
24: [[Image:DALI_alignment.png]]
32: [[Image: NetGo.png]] - BASIL2023GVQ8DN35 (4,305 bytes)
12: ...G) were selected based on binding affinity during PyRx docking analysis and based on correct binding sit...
15: ...have glucokinase activity as it's deepest result. PyRX docking data showed us that NAG (N-acetyl-D-gluco...
18: [[Image:Docking site Q8DN35.png]]
20: ...tes were taken into consideration when looking at PyRx docking tools.
24: [[Image:Experimental procedure Q8DN35 smaller.png]] - Image:1T9G (Single Chain with CO8).pdb (196 bytes)
2: ...ly docked OCTANOYL-COENZYME A (PDB ID: CO8) using PyRx. - BASIL2023GVP30646 (6,363 bytes)
26: ...est through docking tools including SwissDock and PyRx.
31: [[Image:Structure-P30646.png]]
41: [[Image:InterPro.png]]
42: [[Image:DALI-Alignment.png]]
44: ...er to test this, our group utilized SwissDock and PyRx to conduct in silico docking experiments. Other s... - Investigating the Mechanisms of Active Site Mutations to the 1T9G WT MCAD Protein to Better Understand Medium Chain Acyl-CoA Dehydrogenase Deficiency (MCADD) (12,666 bytes)
9: ...om its homotetramer portion isolated for clarity. PyRx was used to dock the substrate, Octanoyl-CoA (PDB...
13: ...mons.wikimedia.org/wiki/File:AcylCoAdehydrogenase.png</ref> In Medium Acyl-CoA Dehydrogenase Deficiency...
15: [[Image:AcylCoAdehydrogenase.png|600px|thumb|center|'''Figure 1:''' Brief summary ...
19: ...y, so Octanoyl-CoA (PDB ID: CO8) was docked using PyRx; CO8 was a ligand in the protein 1EGC, a similar ...
30: [[Image:Omar_Saleh_Table_Figure.png|600px|thumb|center|'''Table 1:''' Mutations by co... - BASIL2022GV3R8E (8,875 bytes)
8: [[Image:Workflow1.png|500px|]]
10: ...ty of in silico tools such as BLASTp, Pfam, DALI, PyRx, and PyMol to help us generate a hypothesis for o...
12: [[Image:3R8EDali180.png|400px|]]
13: [[Image:3R8EDALIHMM.png|400px|]]
16: ...e significantly less than glucose. Along with the PyRx docking, we visualized <scene name='90/904995/Glu... - BASIL2022GV3HDT (10,847 bytes)
16: [[Image:BLASTp image 1.png |600px| left | thumb | BLASTp alignment showing a...
18: [[Image:BLASTp image 2.png |600px| left | thumb | Query hits 1-2 show protei...
43: [[Image:Pfam search resultsJRAF2022.png |800px| center | thumb | Pfam query aligned with ...
45: [[Image:Pfam domainsJRAF2022.png |700px| center | thumb | Top domain results from ...
52: [[Image:3hdtDALI.png | 400px|center|thumb| Spatial alignment of putati...
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