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- Image:SPRITE.jpg (0 bytes)
- Image:SPRITE.png (0 bytes)
- Image:SPRITE pic.png (0 bytes)
- Image:SPRITE pic 2.png (0 bytes)
- Image:Sprite.jpg (88 bytes)
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- Sandbox2QRU (4,778 bytes)
16: '''SPRITE'''
17: ...roteins closest in structure to 2QRU. To do this, Sprite analyzed 2QRU for an active site with a motif of ...
20: ...teins. Chimera uses the results gathered from the Sprite assay to display the proposed structure of 2QRU a...
28: ...png | thumb]][[Image:2QRU(green)2YH2D(orange)DALI.png | thumb]]Among all the highest related proteins, ...
37: ...iferyl 2-acetamido-2-deoxy-beta-D-glucopyranoside.png | thumb]]The analysis of 2QRU on this site was pe... - Image:3H04 overlap with 1pfp.png (32 bytes)
1: SPRITE overlap of 3H04 with 1pfp - Sandbox3H04 (9,405 bytes)
13: '''SPRITE'''
14: ...overlap shown here.[[Image:3HO4 overlap with 1n8o.png |200px|center|thumb|]]
18: ...ich can be viewed here.[[Image:ChimeraAlignmentBS.png |300px|center|thumb|]]
22: ...drolase was the function of 3H04.[[Image:INTERPRO.png |500px|center|thumb|]]
27: ...ere the protein can be found.[[Image:DALIFUCEDSHT.png |300px|center|thumb|]] - Sand box 326 (5,760 bytes)
11: ...ng primary and quaternary structures of 3CBW with SPRITE and Chimera revealed two chains identical in both...
28: [[Image:BLAST.png |300px|center|thumb|]]
32: Using Right-hand SPRITE analysis, it showed that 3BCW had similar residue...
34: [[Image:SPRITE.png |300px|center|thumb|]]
46: [[Image:Screenshot_2025-04-28_110316.png |300px|center|thumb|]] - Sandbox 326 (16,536 bytes)
16: '''SPRITE:'''
22: ...ructure of the protein. Based on the results from SPRITE, the protein of known function was loaded into Ch...
74: == Structural Alignment Through SPRITE, Chimera, Dali, and BLAST ==
76: Based on the findings through SPRITE and Chimera, 1XNY_C00 had the lowest RMSD value a...
78: [[Image:SPRITE.jpg]] [[Image:Chimera.jpg]] - Sandbox 323 (10,380 bytes)
31: ...e 3DS8 active site with known proteins. Using the SPRITE database [3], the 3DS8 protein was matched with a...
82: ...arious other proteins in databases such as BLAST, SPRITE, and DALI. The sequence matches gave information ...
91: 3. http://211.25.251.163/sprite/ - Sandbox2O14 (13,532 bytes)
13: 2O14 exists as monomeric protein complex. Using SPRITE and Chimera revealed one chain that is very long ...
18: ... the SGNH Hydrolase protein super family. Using a SPRITE analysis, we found that the lower RMSD values mat...
27: ...nalysis of the primary structure of 2O14 began in SPRITE. Right-handed superposition analysis related two ...
34: After obtaining data from SPRITE, 2O14 was superimposed onto 1PP4 giving an angstr...
86: [[Image:6_10mg10mLPNPASMALL.png]] - Sandbox326 (14,712 bytes)
29: ...omputer modeling strategies used such as Chimera, SPRITE, Dali, BLAST, InterPRO, and SwissDock allowed vis...
46: ...t analyze side chains); visualized results from SPRITE in a different way.
48: * SPRITE: evaluated local alignments- only a small part of...
75: [[Image:SPRITE_pic.png]]
77: Figure 1: List of hits of 2QRU from SPRITE (10 of 200 entries shown here). The first column ... - Sandbox323 (18,439 bytes)
11: ...lett, P.; Artymiuk, P. J.; Firdaus-Raih, M. 2012. SPRITE and ASSAM: web servers for side chain 3D-motif se...
13: ...equences of the A and B chains of 4Q7Q.<ref name="SPRITE" />.]]
19: ...amily, and the known conserved residues seen from SPRITE analysis—Serine, Glycine, Asparagine, and Histi...
21: [[Image:4Q7QAChain.png|300px|right|thumb|Chimera-generated representatio...
31: [[Image:4Q7QEsteraseConserv.png|300px|left|thumb| Conserved sequences of note bet... - Sandbox324 (9,292 bytes)
3: ...ry experiments. Online tools such as BLAST, Dali, SPRITE, and InterPro often matched 4DIU with carboxylest...
19: ...o zero means less deviation between sites.[[Image:Sprite.jpg]]
21: '''Figure 1: '''Results from SPRITE of top 10 matching proteins With 4DIU based on am...
24: .... All results again matched what was suggested by Sprite and Blast, further solidifying that 4DIU is an es...
51: ... A 222, Asp A 192, and Ser A 93, as determined by SPRITE, Chimera, etc., confirms the presence of this cat... - Image:4Q7QPAFASPRITE.png (166 bytes)
2: Sprite Alignment between 4Q7Q Motif and Platelet-Activat... - BASIL2023GV1ZBS (7,907 bytes)
3: ...tiple computational tools, such as BLAST-P, DALI, SPRITE, InterPro. Molecular docking using NAG as a subst...
7: [[Image: FlowChart.png ]]
8: ...r computational work, which includes BLAST, DALI, SPRITE, Net-GO, and the Docking analysis, while we start...
14: [[Image:BLASTP.png]]
19: [[Image:InterPro_Results_1ZBS.png]] - BASIL2023GVQ8DN35 (4,305 bytes)
15: ...ls such as NetGO, BLAST, DALI, InterPRO, PyRX and SPRITE allowed for this predicted function. Q8DN35's seq...
18: [[Image:Docking site Q8DN35.png]]
24: [[Image:Experimental procedure Q8DN35 smaller.png]]
29: [[Image:Q8DN35 DNA Gel.png]]
35: [[Image:Q8DN35 initial SDS-PAGE.png]] - Image:MCSA1.png (97 bytes)
1: Table 3. EC numbers of the six most significant SPRITE result enzymes with definitions from M-CSA - Image:SPRITE1.png (103 bytes)
1: SPRITE results having scores indicating the most signifi... - Image:SPRITE2.png (122 bytes)
2: results provided by SPRITE. - Image:SPRITE3.png (525 bytes)
1: SPRITE catalytic motif residue alignment image
6: ....; Willett, P.; Artymiuk, P. J.; Firdaus-Raih, M. SPRITE and ASSAM: web servers for side chain 3D-motif se... - Image:SPRITE4.png (265 bytes)
1: SPRITE catalytic motif residue alignment image - BASIL2023GVP30646 (6,363 bytes)
6: ... P30646. Computation tools including BLAST, DALI, SPRITE, and InterPro allowed our group to compare the st...
31: [[Image:Structure-P30646.png]]
41: [[Image:InterPro.png]]
42: [[Image:DALI-Alignment.png]]
48: [[Image:Swiss-Dock.png]]
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