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- User:Ignacio Ibarra Del Río/Workbench/Comparative modelling testing (1,770 bytes)
1: == Structural analysis testing ==
7: <applet load='1d31_longest_duplex.pdb' size='300' frame='true' align='right' caption='1...
12: '''List of PDB structures that were cut'''
14: ...ne of the structures, a PIR file was created (see pdb2ali.py). it represents via a MODELLER format the ...
33: == Enthalpy Prediction testing == - Category:Protein expression testing (57 bytes)
1: List of pages with the keyword Protein expression testing - Image:Testing.pdb (0 bytes)
- Testing Jmol 12.2.16 (1,234 bytes)
1: Findings while testing Jmol 12.2.XX on Proteopedia: - Testing PDB File Sizes (3,489 bytes)
1: ==Testing Computational Performance==
6: === PDBs of Increasing Size and Working Status on Various...
9: ! PDBid Page
246: ...DBSizeDistribution.html File size Distribution of PDB entries from OCA ] with the addition of some addi...
247: ...on the current table of File size Distribution of PDB entries from OCA. - User:Angel Herraez/Testing structure prediction (950 bytes)
- Sandbox testing Sn2 for Veronika (3,581 bytes)
Page text matches
- User:Wayne Decatur/Sandboxsurffade (1,352 bytes)
5: ==Testing Surface fade==
6: <Structure load='Insert PDB code or filename here' size='350' frame='true' al... - 1vyw (7,803 bytes)
7: ...-(2-NAPHTHYL)ACETAMIDE'>292</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vyw ProSAT]</span></td></tr>
20: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vyw ConSurf].
24: ...rly compounds in this series, as well as in vitro testing funneled for rapidly achieving in vivo efficacy, ...
30: <div class="pdbe-citations 1vyw" style="background-color:#fffaf0;... - 1vyz (7,690 bytes)
7: ...<td class="sblockDat" id="ligandDat"><scene name='pdbligand=N5B:N-(5-CYCLOPROPYL-1H-PYRAZOL-3-YL)BENZAM...
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vyz ProSAT]</span></td></tr>
20: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vyz ConSurf].
24: ...rly compounds in this series, as well as in vitro testing funneled for rapidly achieving in vivo efficacy, ...
30: <div class="pdbe-citations 1vyz" style="background-color:#fffaf0;... - 1eb2 (3,827 bytes)
7: ...dbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1eb2 ProSAT]</span></td></tr>
20: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1eb2 ConSurf].
24: ...ign, virtual screening, synthesis, and biological testing. Highly potent molecules with selectivity for fac...
30: <div class="pdbe-citations 1eb2" style="background-color:#fffaf0;... - 1tsl (4,671 bytes)
7: ...ZO[DE]ISOCHROMEN-1-ONE'>A15</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tsl ProSAT]</span></td></tr>
20: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1tsl ConSurf].
24: ...gn of further compounds. Subsequent synthesis and testing showed that these second-round compounds inhibit ...
30: <div class="pdbe-citations 1tsl" style="background-color:#fffaf0;... - 1tsm (4,664 bytes)
7: ...ZO[DE]ISOCHROMEN-1-ONE'>MR2</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tsm ProSAT]</span></td></tr>
20: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1tsm ConSurf].
24: ...gn of further compounds. Subsequent synthesis and testing showed that these second-round compounds inhibit ...
30: <div class="pdbe-citations 1tsm" style="background-color:#fffaf0;... - 1hh6 (3,952 bytes)
7: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1hh6 ProSAT]</span></td></tr>
19: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1hh6 ConSurf].
23: ... pathways connecting 2560 different peptides, and testing them for CB4-1 binding. The binding modes of inte...
29: <div class="pdbe-citations 1hh6" style="background-color:#fffaf0;... - 1hh9 (4,120 bytes)
7: ...<td class="sblockDat" id="ligandDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1hh9 ProSAT]</span></td></tr>
20: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1hh9 ConSurf].
24: ... pathways connecting 2560 different peptides, and testing them for CB4-1 binding. The binding modes of inte...
30: <div class="pdbe-citations 1hh9" style="background-color:#fffaf0;... - Image:Uvrb fancy.spt (109 bytes)
2: Testing a concept of selecting the next scene by rotation - 1ody (12,195 bytes)
7: ...<td class="sblockDat" id="ligandDat"><scene name='pdbligand=LP1:4-[2-(2-ACETYLAMINO-3-NAPHTALEN-1-YL-PR...
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ody ProSAT]</span></td></tr>
20: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ody ConSurf].
24: ...velopment of a small-animal model for preclinical testing of antiviral compounds.
30: <div class="pdbe-citations 1ody" style="background-color:#fffaf0;... - 2fmb (5,082 bytes)
7: ...<td class="sblockDat" id="ligandDat"><scene name='pdbligand=LP1:4-[2-(2-ACETYLAMINO-3-NAPHTALEN-1-YL-PR...
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fmb ProSAT]</span></td></tr>
20: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fmb ConSurf].
24: ...velopment of a small-animal model for preclinical testing of antiviral compounds.
30: <div class="pdbe-citations 2fmb" style="background-color:#fffaf0;... - 8gj8 (3,427 bytes)
7: ...DENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8gj8 ProSAT]</span></td></tr>
12: ...velopment, and identify regions to aid functional testing and classification of cancer mutations.
18: <div class="pdbe-citations 8gj8" style="background-color:#fffaf0;... - 8gj9 (3,357 bytes)
7: ...<td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8gj9 ProSAT]</span></td></tr>
12: ...velopment, and identify regions to aid functional testing and classification of cancer mutations.
18: <div class="pdbe-citations 8gj9" style="background-color:#fffaf0;... - 8gja (3,439 bytes)
7: ...DENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=BEF:BERYLLIUM+TRIFLUORIDE+ION'>BEF</scene><...
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8gja ProSAT]</span></td></tr>
12: ...velopment, and identify regions to aid functional testing and classification of cancer mutations.
18: <div class="pdbe-citations 8gja" style="background-color:#fffaf0;... - 4fiv (5,112 bytes)
7: ...<td class="sblockDat" id="ligandDat"><scene name='pdbligand=LP1:4-[2-(2-ACETYLAMINO-3-NAPHTALEN-1-YL-PR...
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4fiv ProSAT]</span></td></tr>
20: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=4fiv ConSurf].
24: ...velopment of a small-animal model for preclinical testing of antiviral compounds.
30: <div class="pdbe-citations 4fiv" style="background-color:#fffaf0;... - 9g76 (3,920 bytes)
7: ...pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NGA:N-ACETYL-D-GALACTOSAMINE'>NGA</scene></...
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9g76 ProSAT]</span></td></tr>
14: ...high-throughput screening campaign was performed, testing approximately 550,000 compounds. After evaluation...
20: <div class="pdbe-citations 9g76" style="background-color:#fffaf0;... - 9b8m (3,536 bytes)
7: ...methyl}hydroxylamine'>A1AQO</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td>...
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9b8m ProSAT]</span></td></tr>
14: ...e, as verified by their preparation and enzymatic testing. Finally, we verified that the cellular activity ...
20: <div class="pdbe-citations 9b8m" style="background-color:#fffaf0;... - 9f17 (3,749 bytes)
7: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9f17 ProSAT]</span></td></tr>
13: .... The presented results reinforce the notion that testing the influence of the tag on protein properties sh...
19: <div class="pdbe-citations 9f17" style="background-color:#fffaf0;... - 8f5u (4,619 bytes)
7: ...igand=PYR:PYRUVIC+ACID'>PYR</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIO...
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8f5u ProSAT]</span></td></tr>
14: ... protein evolution and as rigorous benchmarks for testing protein predictions. We trust that the collected ...
20: <div class="pdbe-citations 8f5u" style="background-color:#fffaf0;... - 8f5t (4,496 bytes)
7: ...pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIO...
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8f5t ProSAT]</span></td></tr>
14: ... protein evolution and as rigorous benchmarks for testing protein predictions. We trust that the collected ...
20: <div class="pdbe-citations 8f5t" style="background-color:#fffaf0;...
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