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- Sandbox dav 4 (1,378 bytes)
12: ''ddddd'' deee dedee dede [[google.com/]] - Art:Cytochrome Wallpaper (391 bytes)
3: ...tal ceilings that graced buidings a century ago. (Google "embossed metal ceilings" and look at the images!...
6: ...nerated from [[1os6]] with the following [[Jmol]] command script: <br><pre> - FirstGlance in Jmol Literature Citations (30,325 bytes)
1: ...ching full text using [https://scholar.google.com Google Scholar] (see [[#Coverage|Coverage]]), and all we...
6: * [https://www.youtube.com/@ericmartz9100 FirstGlance YouTube Channel] [[Ima...
13: <li>Seeing locations of [[Missing residues and incomplete sidechains|'''missing''' residues]], which a...
26: ...' at [https://tinyurl.com/movingmolecules tinyurl.com/movingmolecules].</span>
30: ==={{Font color|#ff8000|Education & Communication}}=== - Sandbox Reserved 686 (5,437 bytes)
9: ...rom ''Streptomyces avermitilis''. One of the most common ways Ivermectin is used, is to treat Onchocerc...
11: ...ts with the glutamate-gated chloride channel to accomplish this.
23: ... 8 Mar. 2002: 1892-95. Web. 27 Apr. 2013. <http://www.sciencemag.org>.</small>
25: ...ogy International (2013): n. pag. Academic Search Complete. Web. 20 Apr. 2013.</small>
27: ...maceutical Scientists Journal 10.1 (2007): 42-46. Google Scholar. Web. 24 Apr. 2013.</small> - Sandbox2 Eric Martz (7,265 bytes)
5: In ConSurf-DB, I suppose that no single compromise between too many and too few sequences wil...
20: ... domain (residues 223-229) is clamped between the complementarity-determining region (CDR)-like loops o...
35: ...I complexes that I found in the [[PDB]]. Sequence comparison of the alpha chain of MHC in the CD8-bindi...
54: ...lass I molecules from diverse species. After that come non-MHC class I sequences, namely multiple seque...
125: ...e list, namely "sp|P15979|HA1F_CHICK Class I histocompatibility antigen, F10 alp...". However, the next... - AlphaFold2 examples from CASP 14 (26,979 bytes)
1: ...illustrated two examples of predictions from that competition.
7: ...-folding-biology-and-bioinformatics/ CASP14: what Google DeepMind’s AlphaFold 2 really achieved, and wha...
12: ...g]]. This was easily confirmed. When the [https://www.uniprot.org/uniprot/P0DTC8 amino acid sequence of...
16: ...ups making predictions. Shortly after the CASP 14 competition (summer 2020), two X-ray crystal structur...
18: ...t-red"><b>carboxy</b></span> '''ends of the chain come together''' to form two parallel beta strands of... - Proteopedia:Problems (18,636 bytes)
11: ...es) of the WikiMedia Search (as modified) vs. the Google search. [[User:Eric Martz|Eric Martz]] 19:20, 13 ...
21: ...rch for "mhc". The page "Major histocompatibility complex class I" appears almost at the end of the 400...
23: ...ching for "antigens" fails to find "Category:Histocompatibility_antigen", but searching for "antigen" f...
51: ...Improve the ‘Search’ option that is above the Google one on side of every page? If someone searches 'r...
59: ... other special characters [[https://www.w3schools.com/charsets/ref_utf_greek.asp]] like &beta; for ... - Help:Searching (7,304 bytes)
2: ... task, and the standard wiki search feature often comes up short, so we wanted to provide another optio...
4: ... text matches, while doing the same search in the Google search box finds many. Words of 4 or more charact...
20: ...itle=CRABP&redirect=no CRABP]''. Click on [http://www.proteopedia.org/wiki/index.php?title=CRABP&redire...
23: ===Disadvantages of the Google search===
24: ...hen searching using the Google search box because Google needs time to find and index new pages. Addition... - User:Paul Craig (780 bytes)
1: ...nother program. You can find out more if you just Google SBEVSL. - Help:Teaching with Proteopedia (11,502 bytes)
17: ... Such worksheets give '''focus''' and a finite '''completion goal''' to each student. In contrast, simp...
40: *[https://www.umass.edu/molvis/workshop/challeng/2015/ppslides....
46: ...http://slides.google.com Google Slides], [https://www.libreoffice.org/ Libre Office]) are a good place ...
53: ...t in Powerpoint] showing answers to these [http://www.umass.edu/molvis/workshop/challeng/2014/pps-um14....
66: ...ent, so they are not readable by the public. If a completed Studio project has sufficient quality, it c... - Molecular modeling and visualization software (8,477 bytes)
9: ...ench]]. Effective use of Jmol requires learning a command scripting language.
10: ...atures of a macromolecule '''without learning any command scripting language'''. [[FirstGlance in Jmol|...
11: *[[ChimeraX]] (free for non-commercial use only).
12: ...menu and command driven package from the [https://www.ncbi.nlm.nih.gov/ US National Center for Biotechn...
15: ...at [http://tinyurl.com/sculpting-proteins tinyurl.com/sculpting-proteins]. - User:Nikhil Malvankar/MB&B 420a-720a 2019 (19,312 bytes)
62: ... will be in the form of [http://slides.google.com Google Slides] emailed to emartz@microbio.umass.edu. You...
80: [https://docs.google.com/presentation/d/1lS59hde5F6ur9VCBO1_eHwXbhQcUHByPP...
95: ::A. [http://www.umass.edu/molvis/workshop/allstruc/whycare.htm Wh...
96: ...red Protein|intrinsically unstructured]]'''. Both commonly exist in the same protein molecule.
110: ...ned by empirical (experimental) methods. The most common methods for determining the 3D structure of a ... - User:Matt Whelihan (7,592 bytes)
9: ...one thing that all bioluminescent species have in common is that they all catalyze the reaction with an...
13: Luciferases have become an invaluable tool in microbiology and biochemis...
20: ...andsummary.do?hetId=OLU&sid=2D1R] and AMP [http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId=AMP&si...
22: ...nn/1'>Rossmann fold</scene> [http://images.google.com/imgres?imgurl=http://chem.csusb.edu/~dpedersn/C43...
23: ...ubstrate binding. This closing of the active site combined with various hydrophobic residues seen packe... - Epitopes (4,726 bytes)
1: ...raphy|crystal structure]] of the antibody:antigen complex, where the contacts are evident. There are se...
19: ... It would also be very useful to have performance comparisons.
21: ...ystal structure of an antibody:antigen complex, a common way to identify the epitope recognized by a pa...
35: ...d ''PepSurf'' (with C++ source), licensed for non-commercial use by Tel-Aviv University. The methods ar... - Sandbox dav2 (8,904 bytes)
1: Search information on Google
2: [http://www.google.ca ]
6: '''Hello and welcome to my new protein page!'''
16: [http://www.google.ca ]
32: | source = [http://highered.mcgraw-hill.com/olcweb/cgi/pluginpop.cgi?it=swf::640::480::/sites... - Membrane proteins (2,390 bytes)
23: *[http://www.mpibp-frankfurt.mpg.de/michel/public/memprotstruc...
25: ...otein structures in bilayers, see [https://github.com/pstansfeld/MemProtMD/ here]. - Proteopedia:Primer (13,876 bytes)
12: ...igation area, remember the 'Help' link. It will become handy.
14: ...s you to save a self-contained version of a page, complete with interactive 3D molecules and working gr...
17: ... or words you enter. Let's call this bottom slot 'Google's search'.
29: ...OOL##', but, of course, you will see the name you composed yourself.
169: A more complete description is available on Proteopedia.org,... - PTEN (3,864 bytes)
2: ...1d5r' size='350' side='right' caption='Human PTEN complex with tartaric acid (PDB entry [[1d5r]])' scen...
5: ...images/nrc2037-f1.jpg&imgrefurl=http://www.nature.com/nrc/journal/v7/n1/fig_tab/nrc2037_F1.html&usg=__3... - Theoretical models (23,954 bytes)
8: ... is important because when theoretical models are compared with empirical models, the theoretical model...
10: ...eposited in the [[Protein Data Bank]] but [http://www.pdb.org/pdb/static.do?p=download/theoretical_mode...
13: ... models'', but are mentioned here for the sake of completeness. Empirical models, usually determined by...
34: ...but the model may not have been completed, or the completed model may not yet have been deposited in th...
51: ...d. Modelers predict the structures which are then compared with subsequently published structures. Begi... - Sandbox Reserved 690 (5,929 bytes)
10: ... analog of TRPV1, which scientists then modify on computers to turn into TRPV1. As I do not have the so...
23: ...unit, and many of the regulation sites and heat become active on the A subunit. As this is not the real...
26: ...h protons and heat as well. Recent studies[http://www.ncbi.nlm.nih.gov/pubmed/9768840] show that these ...
40: ...m.nih.gov/pubmed/19562439]. Capsazepine acts as a competitive ihibitor to capsaicin, thereby binding on...
48: ...els has been taken from http://www.benthamscience.com/open/topainj/articles/V003/SI0066TOPAINJ/68TOPAIN...
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