RNA polymerase 3D structures
From Proteopedia
(Difference between revisions)
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**[[1go3]] – MjRNAP subunit RPB4, RPB7 - ''Methanocaldococcus jannaschii''<br /> | **[[1go3]] – MjRNAP subunit RPB4, RPB7 - ''Methanocaldococcus jannaschii''<br /> | ||
**[[1iw7]], [[1smy]], [[6asg]] - TtRNAP subunits α,β,β',ω ''Thermus thermophilus''<br /> | **[[1iw7]], [[1smy]], [[6asg]] - TtRNAP subunits α,β,β',ω ''Thermus thermophilus''<br /> | ||
+ | **[[8hsh]] - TtRNAP subunits α,β,β',ω - Cryo EM<br /> | ||
**[[1doq]] - TtRNAP subunit α<br /> | **[[1doq]] - TtRNAP subunit α<br /> | ||
**[[3lti]]– EcRNAP subunit β fragment – ''Escherichia coli''<br /> | **[[3lti]]– EcRNAP subunit β fragment – ''Escherichia coli''<br /> | ||
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**[[4kbj]] – MtuRNAP β subunit – ''Mycobacterium tuberculosis''<br /> | **[[4kbj]] – MtuRNAP β subunit – ''Mycobacterium tuberculosis''<br /> | ||
**[[5uh7]] - MtuRNAP subunit β’<br /> | **[[5uh7]] - MtuRNAP subunit β’<br /> | ||
+ | **[[7z8q]] - MtuRNAP subunits α,β,β’,ω – Cryo EM<br /> | ||
**[[4noi]] – RNAP α subunit – ''Campylobacter jejuni''<br /> | **[[4noi]] – RNAP α subunit – ''Campylobacter jejuni''<br /> | ||
**[[1hqm]] – TaRNAP subunits α,β,β',ω ''Thermus aquaticus''<br /> | **[[1hqm]] – TaRNAP subunits α,β,β',ω ''Thermus aquaticus''<br /> | ||
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**[[7ccg]] - RNAP subunit δ - ''Streptomyces albulus''<br /> | **[[7ccg]] - RNAP subunit δ - ''Streptomyces albulus''<br /> | ||
**[[7ok0]], [[7oqy]] – SaRNAP – ''Sulfolobus acidocaldarius'' – Cryo EM<br /> | **[[7ok0]], [[7oqy]] – SaRNAP – ''Sulfolobus acidocaldarius'' – Cryo EM<br /> | ||
+ | **[[8h02]] – SeRNAP subunit ’ – Synechococcus elongatus<br /> | ||
+ | **[[8emb]] – RNAP subunit ’ si3 domain – Thermosynechococcus vestitus<br /> | ||
+ | **[[8dkc]] – RNAP subunits ’ Porphyromonas gingivalis – Cryo EM<br /> | ||
- | *Prokaryotic DNA-dependent RNAP complex with DNA/RNA | + | *Prokaryotic DNA-dependent RNAP complex with DNA/RNA or elongation complex |
**[[4v8s]] – SsRNAP + DNA<br /> | **[[4v8s]] – SsRNAP + DNA<br /> | ||
**[[3q22]], [[3q23]], [[3q24]], [[4ff1]], [[4ff2]], [[4ff3]], [[4ff4]] – RNAP + DNA – Enterobacteria phage N4<br /> | **[[3q22]], [[3q23]], [[3q24]], [[4ff1]], [[4ff2]], [[4ff3]], [[4ff4]] – RNAP + DNA – Enterobacteria phage N4<br /> | ||
- | **[[2o5i]], [[2o5j]], [[4gzy]], [[4gzz]], [[4xln]], [[4xlr]] | + | **[[2o5i]], [[2o5j]], [[4gzy]], [[4gzz]], [[4xln]], [[4xlr]] – TtRNAP subunits ’ + DNA +RNA<br /> |
- | **[[6m6c]] - TtRNAP in elongation complex – Cryo EM<br /> | + | **[[6m6c]], [[8hsg]], [[8hsr]] - TtRNAP in elongation complex – Cryo EM<br /> |
- | **[[5x22]] - TtRNAP subunits | + | **[[5x22]] - TtRNAP subunits ’ + DNA + RNA + CMPCPP<br /> |
- | **[[5x21]] - TtRNAP subunits | + | **[[5x21]] - TtRNAP subunits ’ + DNA + RNA + antibiotic<br /> |
- | **[[4wqs]], [[4xlp]], [[4xlq]], [[4xls]], [[5tjg]] - TtRNAP subunits | + | **[[4wqs]], [[4xlp]], [[4xlq]], [[4xls]], [[5tjg]] - TtRNAP subunits ’ + DNA<br /> |
- | **[[2ppb]] - TtRNAP subunits | + | **[[2ppb]] - TtRNAP subunits ’ + antibiotic + DNA + RNA + substrate analog<br /> |
- | **[[4yg2]], [[4jk1]], [[4jk2]], [[4jkr]], [[4kmu]] - EcRNAP subunits | + | **[[4yg2]], [[4jk1]], [[4jk2]], [[4jkr]], [[4kmu]] - EcRNAP subunits ’ RNA<br /> |
- | **[[6flp]], [[6bjs]], [[6asx]], [[6alh]], [[6alf]], [[6rip]], [[6ri9]] | + | **[[8aby]], [[8ac0]], [[8acp]], [[8ad1]] - EcRNAP in elongation complex + RNA putL – Cryo EM<br /> |
- | **[[6rh3]] - EcRNAP subunits | + | **[[6flp]], [[6bjs]], [[6asx]], [[6alh]], [[6alf]], [[6rip]], [[6ri9]], [[7q0j]], [[7q0k]], [[7tyb]], [[7xue]], [[7xug]], [[7yp9]], [[8abz]], [[8ac1]], [[8ac2]], [[8eg7]], [[8eg8]], [[8egb]], [[8eh8]] , [[8eh9]], [[8eha]], [[8ehf]], [[8ehi]], [[8f1i]], [[8f1k]], [[8f3c]], [[8fix]], [[8fiy]], [[8fvr]], [[8fvw]], [[8g00]], [[8g1s]], [[8g2w]], [[8g7e]], [[8pbl]] - EcRNAP in elongation complex – Cryo EM<br /> |
- | **[[4kn4]], [[4kn7]] - EcRNAP subunits | + | **[[7ypa]] - EcRNAP in transcription-termination complex – Cryo EM<br /> |
+ | **[[6rh3]] - EcRNAP subunits ’ RNA + DNA + GMP + CTP – Cryo EM<br /> | ||
+ | **[[4kn4]], [[4kn7]] - EcRNAP subunits ’ RNA + antibiotic<br /> | ||
**[[6vvv]] – MsRNAP in translation initiation complex <br /> | **[[6vvv]] – MsRNAP in translation initiation complex <br /> | ||
**[[7p5x]] – MsRNAP in translation initiation complex + PafBC – Cryo EM<br /> | **[[7p5x]] – MsRNAP in translation initiation complex + PafBC – Cryo EM<br /> | ||
- | **[[6vvx]], [[6vvy]], [[6vvs]], [[6vvt]], [[6vvz]] – MsRNAP subunits | + | **[[6vvx]], [[6vvy]], [[6vvs]], [[6vvt]], [[6vvz]] – MsRNAP subunits ’ DNA + antibiotic<br /> |
- | **[[7l7b]] – RNAP subunits | + | **[[7l7b]] – RNAP subunits ’ sigma factor SIGA + antibiotic – Clostridia difficalis – Cryo EM<br /> |
+ | **[[8gzg]], [[8gzh]] – RNAP elongation complex sigma factor SIGA – Synechocystic – Cryo EM<br /> | ||
*''Prokaryotic DNA-dependent RNAP complex with protein'' | *''Prokaryotic DNA-dependent RNAP complex with protein'' | ||
- | **[[3p8b]] – PfRNAP subunit ε’’ + | + | **[[3p8b]] – PfRNAP subunit ε’’ + NusG <br /> |
- | **[[3qqc]] - PfRNAP subunits β, ε’’ + | + | **[[3qqc]] - PfRNAP subunits β, ε’’ + NusG<br /> |
**[[2be5]]- TtRNAP subunits α,β,β’,ω + σ factor + inhibitor <br /> | **[[2be5]]- TtRNAP subunits α,β,β’,ω + σ factor + inhibitor <br /> | ||
**[[2cw0]], [[5tmf]] - TtRNAP subunits α,β,β’,ω + σ factor<br /> | **[[2cw0]], [[5tmf]] - TtRNAP subunits α,β,β’,ω + σ factor<br /> | ||
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**[[5xj0]] - TtRNAP subunits α,β,β’,ω + σ factor + GP39 + GP76<br /> | **[[5xj0]] - TtRNAP subunits α,β,β’,ω + σ factor + GP39 + GP76<br /> | ||
**[[4wqt]] - TtRNAP subunits α,β,β’,ω + RNA cleavage stimulating factor<br /> | **[[4wqt]] - TtRNAP subunits α,β,β’,ω + RNA cleavage stimulating factor<br /> | ||
+ | **[[8hsl]] - TtRNAP subunits α,β,β’,ω + transcription termination factor rho – Cryo EM<br /> | ||
**[[3mlq]] - TtRNAP subunit β + transcription-repair coupling factor<br /> | **[[3mlq]] - TtRNAP subunit β + transcription-repair coupling factor<br /> | ||
**[[3woe]], [[3wof]] - TtRNAP subunit β + GP39<br /> | **[[3woe]], [[3wof]] - TtRNAP subunit β + GP39<br /> | ||
**[[2lmc]] - EcRNAP subunit β + RNAP inhibitor <br /> | **[[2lmc]] - EcRNAP subunit β + RNAP inhibitor <br /> | ||
**[[3mmp]] - EcRNAP subunit β + EF-TU<br /> | **[[3mmp]] - EcRNAP subunit β + EF-TU<br /> | ||
- | **[[4ljz]], [[4lk1]], [[4mey]], [[4xsx]], [[4xsy]], [[4xsz]], [[4zh2]], [[4zh3]] , [[4zh4]], [[5nwt]], [[5uag]], [[5uah]], [[5uaj]], [[5ual]], [[5uaq]], [[5ui8]] - EcRNAP subunits α,β,β’,ω + σ factor <br /> | + | **[[7egs]] - EcRNAP subunit β + DNA helicase II 654-720<br /> |
+ | **[[4ljz]], [[4lk1]], [[4mey]], [[4xsx]], [[4xsy]], [[4xsz]], [[4zh2]], [[4zh3]] , [[4zh4]], [[5byh]], [[5nwt]], [[5uag]], [[5uah]], [[5uaj]], [[5ual]], [[5uaq]], [[5ui8]] - EcRNAP subunits α,β,β’,ω + σ factor <br /> | ||
**[[6c9y]] - EcRNAP subunits α,β,β’,ω + σ factor – Cryo EM<br /> | **[[6c9y]] - EcRNAP subunits α,β,β’,ω + σ factor – Cryo EM<br /> | ||
**[[4mex]] - EcRNAP subunits α,β,β’,ω + σ factor + salinamide<br /> | **[[4mex]] - EcRNAP subunits α,β,β’,ω + σ factor + salinamide<br /> | ||
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**[[5w1s]] - EcRNAP subunits α,β,β’,ω + σ factor + TRAR<br /> | **[[5w1s]] - EcRNAP subunits α,β,β’,ω + σ factor + TRAR<br /> | ||
**[[6p1k]] - EcRNAP subunits α,β,β’,ω + RPOD – Cryo EM<br /> | **[[6p1k]] - EcRNAP subunits α,β,β’,ω + RPOD – Cryo EM<br /> | ||
+ | **[[7xui]] – EcRNAP in elongation complex + RPOD – Cryo EM<br /> | ||
**[[6vjs]] - EcRNAP subunits α,β,β’,ω + RPOD + inhibitor<br /> | **[[6vjs]] - EcRNAP subunits α,β,β’,ω + RPOD + inhibitor<br /> | ||
**[[6r9b]], [[6r9g]] - EcRNAP subunits α,β,β’,ω + OCR – Cryo EM<br /> | **[[6r9b]], [[6r9g]] - EcRNAP subunits α,β,β’,ω + OCR – Cryo EM<br /> | ||
**[[6n57]], [[6n58]] - EcRNAP subunits α,β,β’,ω + RPOD + TRAR – Cryo EM<br /> | **[[6n57]], [[6n58]] - EcRNAP subunits α,β,β’,ω + RPOD + TRAR – Cryo EM<br /> | ||
- | **[[ | + | **[[7w5y]] - EcRNAP subunits α,β,β’,ω + RPOD + SoxS – Cryo EM<br /> |
+ | **[[7w5w]] - EcRNAP subunits α,β,β’,ω + RPOD + SoxS + micF DNA – Cryo EM<br /> | ||
+ | **[[7w5x]] - EcRNAP subunits α,β,β’,ω + RPOD + SoxS + zwf DNA – Cryo EM<br /> | ||
**[[5tbz]] - EcRNAP subunits α,β,β’ + NusG – Cryo EM<br /> | **[[5tbz]] - EcRNAP subunits α,β,β’ + NusG – Cryo EM<br /> | ||
**[[6xln]], [[7mko]] - EcRNAP in elongation complex – Cryo EM<br /> | **[[6xln]], [[7mko]] - EcRNAP in elongation complex – Cryo EM<br /> | ||
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**[[7m8e]], [[7mkn]], [[7mkq]] - EcRNAP subunits α,β,β’,ω + RapA – Cryo EM<br /> | **[[7m8e]], [[7mkn]], [[7mkq]] - EcRNAP subunits α,β,β’,ω + RapA – Cryo EM<br /> | ||
**[[6fbv]] - MtuRNAP subunits α,β,β’,ω + σ factor – single particle EM<br /> | **[[6fbv]] - MtuRNAP subunits α,β,β’,ω + σ factor – single particle EM<br /> | ||
- | **[[ | + | **[[7u22]] - MtuRNAP subunits α,β,β’,ω + σ factor SIGA<br /> |
- | **[[ | + | **[[7pp4]], [[7q4u]], [[7q59]], [[7zf2]] - MtuRNAP subunits α,β,β’,ω + σ factor SIGB – Cryo EM<br /> |
- | **[[ | + | **[[5zx3]] - MtuRNAP subunits α,β,β’,ω + σ factor SIGH<br /> |
**[[3ihq]], [[1z3e]], [[3gfk]] - BsRNAP subunit α + regulatory protein SPX<br /> | **[[3ihq]], [[1z3e]], [[3gfk]] - BsRNAP subunit α + regulatory protein SPX<br /> | ||
**[[1l9u]] - TaRNAP subunits α,β,β’,ω + σ factor<br /> | **[[1l9u]] - TaRNAP subunits α,β,β’,ω + σ factor<br /> | ||
- | **[[2jzb]] – RNAP subunit α + NusA | + | **[[2jzb]] – RNAP subunit α + NusA – ''Yersinia pseudotuberculosis''<br /> |
**[[3tbi]] - RNAP subunit β + GP33 – Enterobacteria phage T4<br /> | **[[3tbi]] - RNAP subunit β + GP33 – Enterobacteria phage T4<br /> | ||
- | **[[3lpe ]]- MjRNAP subunit ε’’ + | + | **[[3lpe]] - MjRNAP subunit ε’’ + NusG<br /> |
**[[6eyd]] - MsRNAP subunits α,β,β’,ω + σ factor – Cryo EM<br /> | **[[6eyd]] - MsRNAP subunits α,β,β’,ω + σ factor – Cryo EM<br /> | ||
**[[6yxu]], [[6yys]], [[6z11]] - MsRNAP subunits α,β,β’,ω + HelD – Cryo EM<br /> | **[[6yxu]], [[6yys]], [[6z11]] - MsRNAP subunits α,β,β’,ω + HelD – Cryo EM<br /> | ||
**[[6kf4]] – TkRNAP subunits a’+d+e’+f+h+k+l+n+p + transcription factor E – Cryo EM<br /> | **[[6kf4]] – TkRNAP subunits a’+d+e’+f+h+k+l+n+p + transcription factor E – Cryo EM<br /> | ||
- | **[[6wvk]], [[6zca]], [6zfb]] - BsRNAP subunits α,β,β’, | + | **[[6wvk]], [[6zca]], [[6zfb]] - BsRNAP subunits α,β,β’,d + HelD – Cryo EM<br /> |
**[[7oq4]] - SaRNAP + viral RNAP inhibitory protein – Cryo EM<br /> | **[[7oq4]] - SaRNAP + viral RNAP inhibitory protein – Cryo EM<br /> | ||
*''Prokaryotic DNA-dependent RNAP complex with σ factor + DNA/RNA'' | *''Prokaryotic DNA-dependent RNAP complex with σ factor + DNA/RNA'' | ||
- | **[[6lts]] - TtRNAP subunits α,β,β’,ω + σ factor + DNA<br /> | + | **[[6lts]] - TtRNAP subunits α,β,β’,ω + σ factor SIGA + DNA<br /> |
+ | **[[7qxi]] - TtRNAP subunits α,β,β’,ω + σ factor-54 + DNA – Cryo EM<br /> | ||
**[[7mlb]], [[7mli]], [[7mlj]], [[7rdq]] - TtRNAP in elongation complex + σ factor SIGA – Cryo EM<br /> | **[[7mlb]], [[7mli]], [[7mlj]], [[7rdq]] - TtRNAP in elongation complex + σ factor SIGA – Cryo EM<br /> | ||
**[[4oin]], [[4oio]] - TtRNAP subunits α,β,β’,ω + σ factor + GE23077 + DNA<br /> | **[[4oin]], [[4oio]] - TtRNAP subunits α,β,β’,ω + σ factor + GE23077 + DNA<br /> | ||
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**[[4yln]], [[4ylo]], [[4ylp]], [[5ipl]], [[5ipm]], [[5ipn]], [[6gfw]] - EcRNAP subunits α,β,β’,ω + σ factor + DNA + RNA<br /> | **[[4yln]], [[4ylo]], [[4ylp]], [[5ipl]], [[5ipm]], [[5ipn]], [[6gfw]] - EcRNAP subunits α,β,β’,ω + σ factor + DNA + RNA<br /> | ||
**[[6b6h]] - EcRNAP subunits α,β,β’,ω + σ factor + CAP + DNA + RNA – Cryo EM<br /> | **[[6b6h]] - EcRNAP subunits α,β,β’,ω + σ factor + CAP + DNA + RNA – Cryo EM<br /> | ||
- | **[[6k4y]] - EcRNAP subunits α,β,β’,ω + σ factor + | + | **[[8hkc]] - EcRNAP subunits α,β,β’ + σ factor RPOH + DNA – Cryo EM<br /> |
+ | **[[6k4y]] - EcRNAP subunits α,β,β’,ω + σ factor + MTOH + DNA – Cryo EM<br /> | ||
+ | **[[7qwp]], [[8f1j]] - EcRNAP subunits α,β,β’,ω + σ factor-54 + DNA – Cryo EM<br /> | ||
+ | **[[7q9v]] - EcRNAP subunits α,β,β’,ω + σ factor-54 + PspF + DNA – Cryo EM<br /> | ||
**[[3iyd]] - EcRNAP subunits α,β,β’,ω + σ factor + catabolite gene activator + DNA<br /> | **[[3iyd]] - EcRNAP subunits α,β,β’,ω + σ factor + catabolite gene activator + DNA<br /> | ||
**[[4s20]] - EcRNAP subunits α,β,β’,ω + σ factor + RAPA + DNA<br /> | **[[4s20]] - EcRNAP subunits α,β,β’,ω + σ factor + RAPA + DNA<br /> | ||
- | **[[5ms0]] - EcRNAP subunits α,β,β’,ω + σ factor + NusB + NusG + NusA | + | **[[5ms0]] - EcRNAP subunits α,β,β’,ω + σ factor + NusB + NusG + NusA + RS10 + DNA – Cryo EM<br /> |
**[[5uha]], [[6vw0]], [[7rwi]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA <br /> | **[[5uha]], [[6vw0]], [[7rwi]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA <br /> | ||
**[[5uh9]], [[5uh8]], [[6jcy]], [[6jcx]], [[6jbq]], [[6kon]], [[6koo]], [[6kop]], [[6koq]], [[6tye]], [[6tyf]], [[6tyg]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RNA <br /> | **[[5uh9]], [[5uh8]], [[6jcy]], [[6jcx]], [[6jbq]], [[6kon]], [[6koo]], [[6kop]], [[6koq]], [[6tye]], [[6tyf]], [[6tyg]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RNA <br /> | ||
+ | **[[8e8m]], [[8e95]] - MtuRNAP in elongation complex <br /> | ||
+ | **[[8hih]] - MtuRNAP in elongation complex + GlnR – Cryo EM<br /> | ||
**[[5uhg]], [[5uhc]], [[5uh6]], [[5uh5]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RNA + antibiotic<br /> | **[[5uhg]], [[5uhc]], [[5uh6]], [[5uh5]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RNA + antibiotic<br /> | ||
**[[5uhd]], [[5uhb]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + antibiotic<br /> | **[[5uhd]], [[5uhb]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + antibiotic<br /> | ||
**[[5uhf]], [[5uhe]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RNA + inhibitor<br /> | **[[5uhf]], [[5uhe]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RNA + inhibitor<br /> | ||
**[[1l9z]] - TaRNAP subunits α,β,β’,ω + σ factor + DNA<br /> | **[[1l9z]] - TaRNAP subunits α,β,β’,ω + σ factor + DNA<br /> | ||
+ | **[[8i23]], [[8i24]] - RNAP subunits α,β,β’,ω + σ factor SIGI1 + DNA – Clostridium thermocellum - Cryo EM<br /> | ||
*''Prokaryotic DNA-dependent RNAP complex with protein + DNA/RNA'' | *''Prokaryotic DNA-dependent RNAP complex with protein + DNA/RNA'' | ||
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**[[5ciz]] - EcRNAP subunit α + DNA + CRP<br /> | **[[5ciz]] - EcRNAP subunit α + DNA + CRP<br /> | ||
**[[3n97]] - EcRNAP subunit α C terminal + DNA + σ factor<br /> | **[[3n97]] - EcRNAP subunit α C terminal + DNA + σ factor<br /> | ||
- | **[[6c6u]] - EcRNAP subunits α,β,β’,ω + NusG + DNA – Cryo EM<br /> | ||
**[[6z9p]], [[6z9q]], [[6z9r]], [[6z9s]], [[6z9t]], [[7add]], [[7ade]] - EcRNAP in termination transcription complex<br /> | **[[6z9p]], [[6z9q]], [[6z9r]], [[6z9s]], [[6z9t]], [[7add]], [[7ade]] - EcRNAP in termination transcription complex<br /> | ||
**[[6vyu]] - EcRNAP in transcription initiation complex + mRNA<br /> | **[[6vyu]] - EcRNAP in transcription initiation complex + mRNA<br /> | ||
+ | **[[6c6u]] - EcRNAP subunits α,β,β’,ω + NusG | ||
+ | + DNA – Cryo EM<br /> | ||
**[[6vu3]], [[6vz3]] - EcRNAP transcription translation complex + mRNA – Cryo EM<br /> | **[[6vu3]], [[6vz3]] - EcRNAP transcription translation complex + mRNA – Cryo EM<br /> | ||
**[[6vzj]] - EcRNAP transcription translation complex + mRNA + tRNA – Cryo EM<br /> | **[[6vzj]] - EcRNAP transcription translation complex + mRNA + tRNA – Cryo EM<br /> | ||
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**[[6x6t]], [[6x7f]], [[6x7k]], [[6x9q]], [[6xdq]] - EcRNAP transcription translation complex + NusA + NusG + mRNA + tRNA – Cryo EM<br /> | **[[6x6t]], [[6x7f]], [[6x7k]], [[6x9q]], [[6xdq]] - EcRNAP transcription translation complex + NusA + NusG + mRNA + tRNA – Cryo EM<br /> | ||
**[[6c6t]], [[6c6s]] - EcRNAP subunits α,β,β’,ω + RFAH + DNA – Cryo EM<br /> | **[[6c6t]], [[6c6s]] - EcRNAP subunits α,β,β’,ω + RFAH + DNA – Cryo EM<br /> | ||
- | **[[6gov]] - EcRNAP subunits α,β,β’,ω + NusB + | + | **[[6gov]] - EcRNAP subunits α,β,β’,ω + NusB + NusG + RS10 + DNA – Cryo EM<br /> |
**[[6flq]] - EcRNAP subunits α,β,β’,ω + NusA + DNA + RNA – Cryo EM<br /> | **[[6flq]] - EcRNAP subunits α,β,β’,ω + NusA + DNA + RNA – Cryo EM<br /> | ||
**[[6xas]] - EcRNAP subunits α,β,β’,ω + NusA + helicase rho + DNA + RNA – Cryo EM<br /> | **[[6xas]] - EcRNAP subunits α,β,β’,ω + NusA + helicase rho + DNA + RNA – Cryo EM<br /> | ||
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**[[6p18]] - EcRNAP subunits α,β,β’,ω + protein Q + σ factor + DNA + RNA – Cryo EM<br /> | **[[6p18]] - EcRNAP subunits α,β,β’,ω + protein Q + σ factor + DNA + RNA – Cryo EM<br /> | ||
**[[6kj6]] - EcRNAP subunits α,β,β’,ω + RPOS + σ factor-binding protein CRL + DNA + RNA – Cryo EM<br /> | **[[6kj6]] - EcRNAP subunits α,β,β’,ω + RPOS + σ factor-binding protein CRL + DNA + RNA – Cryo EM<br /> | ||
- | **[[7chw]] - EcRNAP subunits α,β,β’,ω + σ factor-binding protein PROD + DNA – Cryo EM<br /> | + | **[[7chw]], [[8igs]] - EcRNAP subunits α,β,β’,ω + σ factor-binding protein PROD + DNA – Cryo EM<br /> |
**[[6x26]], [[6x2f]], [[6x2n]], [[6x43]], [[6x4w]], [[6x4y]], [[6x50]] - EcRNAP in elongation complex + TRCF – Cryo EM<br /> | **[[6x26]], [[6x2f]], [[6x2n]], [[6x43]], [[6x4w]], [[6x4y]], [[6x50]] - EcRNAP in elongation complex + TRCF – Cryo EM<br /> | ||
- | **[[7khb]], [[7khc]], [[7khe]], [[7khi]] - EcRNAP subunits α,β,β’,ω + σ factor | + | **[[8e3f]], [[8e6x]], [[8e6z]] - EcRNAP in elongation complex + NusG - Cryo EM<br /> |
- | **[[7bef]], [[7beg]] - EcRNAP subunits α,β,β’,ω + σ factor | + | **[[8g4w]], [[8g8z]] - EcRNAP in elongation complex + preQ1 – Cryo EM<br /> |
- | **[[6xh7]], [[7c17]] - EcRNAP subunits α,β,β’,ω + σ factor | + | **[[7uwe]] - EcRNAP in elongation complex + RNase HII – Cryo EM<br /> |
- | **[[6xh8]] - EcRNAP subunits α,β,β’,ω + σ factor | + | **[[8igr]] - EcRNAP in transcription activation complex + phage regulatory protein CII - Cryo EM<br /> |
- | **[[6xl5]], [[6xl9]], [[6xlj]], [[6xll]], [[6xlm]] - EcRNAP subunits α,β,β’,ω + σ factor | + | **[[7vwz]] - EcRNAP in transcription activation complex + NusA + antitermination protein - Cryo EM<br /> |
- | **[[6wmu]], [[7c97]], [[7dy6]] - EcRNAP subunits α,β,β’,ω + σ factor | + | **[[7ubm]], [[7ubn]] - EcRNAP in transcription antitermination complex + right origin binding protein - Cryo EM<br /> |
+ | **[[7khb]], [[7khc]], [[7khe]], [[7khi]] - EcRNAP subunits α,β,β’,ω + σ factor RPOD + DNAK suppressor protein + DNA – Cryo EM<br /> | ||
+ | **[[7bef]], [[7beg]] - EcRNAP subunits α,β,β’,ω + σ factor RPOD + RAMA + DNA – Cryo EM<br /> | ||
+ | **[[6xh7]], [[7c17]] - EcRNAP subunits α,β,β’,ω + σ factor RPOD + CueR + DNA – Cryo EM<br /> | ||
+ | **[[6xh8]] - EcRNAP subunits α,β,β’,ω + σ factor RPOD + CueR + DNA + RNA – Cryo EM<br /> | ||
+ | **[[6xl5]], [[6xl9]], [[6xlj]], [[6xll]], [[6xlm]] - EcRNAP subunits α,β,β’,ω + σ factor RPOD + DNA + RNA – Cryo EM<br /> | ||
+ | **[[6wmu]], [[7c97]], [[7dy6]] - EcRNAP subunits α,β,β’,ω + σ factor RPOD + starvation protein + DNA - Cryo EM<br /> | ||
**[[7d7c]] - EcRNAP subunits α,β,β’,ω + GP55 + DNA - Cryo EM<br /> | **[[7d7c]] - EcRNAP subunits α,β,β’,ω + GP55 + DNA - Cryo EM<br /> | ||
**[[7d7d]] - EcRNAP subunits α,β,β’,ω + DNAP clamp + GP55 + DNA - Cryo EM<br /> | **[[7d7d]] - EcRNAP subunits α,β,β’,ω + DNAP clamp + GP55 + DNA - Cryo EM<br /> | ||
- | **[[6n4c]], [[6oul]], [[ | + | **[[6n4c]], [[6oul]], [[6wr6]], [[6wr8]], [[7n4e]] - EcRNAP subunits α,β,β’,ω + RPOD + DNA – Cryo EM<br /> |
+ | **[[7szj]], [[7szk]] - EcRNAP subunits α,β,β’,ω + RPOD + DNA + drug – Cryo EM<br /> | ||
**[[6ldi]] - EcRNAP subunits α,β,β’,ω + RPOD + CUER + DNA + RNA – Cryo EM<br /> | **[[6ldi]] - EcRNAP subunits α,β,β’,ω + RPOD + CUER + DNA + RNA – Cryo EM<br /> | ||
**[[6pb4]], [[6pb5]], [[6pb6]] - EcRNAP subunits α,β,β’,ω + RPOD + CRP + DNA + RNA – Cryo EM<br /> | **[[6pb4]], [[6pb5]], [[6pb6]] - EcRNAP subunits α,β,β’,ω + RPOD + CRP + DNA + RNA – Cryo EM<br /> | ||
Line 181: | Line 209: | ||
**[[6tqn]], [[6tqo]] - EcRNAP subunits α,β,β’,ω in anti-termination complex – Cryo EM<br /> | **[[6tqn]], [[6tqo]] - EcRNAP subunits α,β,β’,ω in anti-termination complex – Cryo EM<br /> | ||
**[[7c17]] - EcRNAP subunits α,β,β’,ω in transcription complex – Cryo EM<br /> | **[[7c17]] - EcRNAP subunits α,β,β’,ω in transcription complex – Cryo EM<br /> | ||
+ | **[[7py3]], [[7pyj]], [[7pyk]] - EcRNAP in elongation complex + NusA - Cryo EM<br /> | ||
+ | **[[7py0]], [[7py1]], [[7py8]] - EcRNAP in elongation complex + NusG - Cryo EM<br /> | ||
+ | **[[7py5]], [[7py6]], [[7py7]] - EcRNAP in elongation complex + NusG + NusA - Cryo EM<br /> | ||
+ | **[[8e5k]], [[8e5o]] - EcRNAP in transcription pre-termination complex + NusG - Cryo EM<br /> | ||
**[[7c97]], [[7chw]] - EcRNAP subunits α,β,β’,ω in promoter-open complex – Cryo EM<br /> | **[[7c97]], [[7chw]] - EcRNAP subunits α,β,β’,ω in promoter-open complex – Cryo EM<br /> | ||
**[[6j9f]] - XoRNAP subunits α,β,β’,ω + P7 + DNA + RNA – Xanthomonas oryzae - Cryo EM<br /> | **[[6j9f]] - XoRNAP subunits α,β,β’,ω + P7 + DNA + RNA – Xanthomonas oryzae - Cryo EM<br /> | ||
Line 194: | Line 226: | ||
**[[7ckq]] - BsRNAP subunits α,β,β’,ω + σ factor-binding protein SIGA + multidrug regulator + YkzG + DNA - Cryo EM<br /> | **[[7ckq]] - BsRNAP subunits α,β,β’,ω + σ factor-binding protein SIGA + multidrug regulator + YkzG + DNA - Cryo EM<br /> | ||
**[[7f75]] - BsRNAP subunits α,β,β’,ω + σ factor-binding protein SIGA + regulator Spx + RNA + DNA - Cryo EM<br /> | **[[7f75]] - BsRNAP subunits α,β,β’,ω + σ factor-binding protein SIGA + regulator Spx + RNA + DNA - Cryo EM<br /> | ||
+ | **[[7ye2]] - CavRNAP in transcription activation complex – Caulobacter vibrioides - Cryo EM<br /> | ||
+ | **[[7ye1]] - CavRNAP in transcription activation complex + GCRA - Cryo EM<br /> | ||
+ | **[[7xya]], [[7xyb]] – PaRNAP subunits α,β,β’,ω + AlpA peptide + RNA + DNA – ''Pseudomonas aeruginosa'' <br /> | ||
+ | **[[7xyb]] – PaRNAP subunits α,β,β’,ω + sigma factor RPOS – Cryo EM<br /> | ||
+ | **[[7f0r]], [[7xl3]], [[7xl4]] – PaRNAP subunits α,β,β’,ω + sigma factor RPOS + SutA – Cryo EM<br /> | ||
+ | **[[8e79]] - BsRNAP in elongation complex + NusG - Cryo EM<br /> | ||
+ | **[[8e74]], [[8e82]], [[8ehq]], [[8ej3]], [[8eoe]], [[8eof]], [[8eos]], [[8eot]], [[8exy]] - MtuRNAP in elongation complex + NusG - Cryo EM<br /> | ||
+ | **[[8h3v]] - RNAP in transcription activation complex + NusG + NTCA + NTCB + VF1- Cryo EM<br /> | ||
+ | **[[8dy7]], [[8dy9]] - RNAP subunits α,β,β’,ω + σ factor + DNA + RBPA + WHIA + WHIB – Streptococcus venezuelae - Cryo EM<br /> | ||
+ | **[[8syi]] - SeRNAP in elongation complex + NusG - Cryo EM<br /> | ||
+ | **[[7vpd]], [[7vpz]], [[7x74]], [[7x75]], [[7x76]] - RNAP in elongation complex + ZUR – Streptococcus coelicolor - Cryo EM<br /> | ||
*''Prokaryotic DNA-dependent RNAP complex with small molecule'' | *''Prokaryotic DNA-dependent RNAP complex with small molecule'' | ||
Line 202: | Line 245: | ||
*Viral DNA-dependent RNAP | *Viral DNA-dependent RNAP | ||
- | **[[6ric]], [[7amv]], [[7aoz]], [[7ap8]], [[7ap9]], [[7aof]], [[7aoh]] | + | **[[6ric]], [[7amv]], [[7aoz]], [[7ap8]], [[7ap9]], [[7aof]], [[7aoh]] – VvRNAP – vaccinia virus – Cryo EM<br /> |
**[[6rid]] – VvRNAP + RNA + DNA – Cryo EM<br /> | **[[6rid]] – VvRNAP + RNA + DNA – Cryo EM<br /> | ||
**[[6rie]] – VvRNAP + mRNA capping enzyme + RNA + DNA – Cryo EM<br /> | **[[6rie]] – VvRNAP + mRNA capping enzyme + RNA + DNA – Cryo EM<br /> | ||
+ | **[[8fm9]], [[8fma]], [[8fmb]] – RNAP – flock house virus – Cryo EM<br /> | ||
*Eukaryotic DNA-dependent RNAP I | *Eukaryotic DNA-dependent RNAP I | ||
- | **[[7oba]] – hRNAP I + TIF-IA | + | **[[8a43]] – hRNAP I – human - Cryo EM<br /> |
+ | **[[7oba]] – hRNAP I + TIF-IA - Cryo EM<br /> | ||
**[[7obb]] – hRNAP I + DNA – Cryo EM<br /> | **[[7obb]] – hRNAP I + DNA – Cryo EM<br /> | ||
**[[7ob9]], [[7vba]], [[7vbb]], [[7vbc]] – hRNAP I in elongation complex – Cryo EM<br /> | **[[7ob9]], [[7vba]], [[7vbb]], [[7vbc]] – hRNAP I in elongation complex – Cryo EM<br /> | ||
Line 222: | Line 267: | ||
*Eukaryotic DNA-dependent RNAP II | *Eukaryotic DNA-dependent RNAP II | ||
- | **[[1qkl]] - hRNAP II subunit RPB6 | + | **[[1qkl]] - hRNAP II subunit RPB6 <br /> |
**[[7dth]] - hRNAP II subunit RPB6 - NMR<br /> | **[[7dth]] - hRNAP II subunit RPB6 - NMR<br /> | ||
**[[2c35]] - hRNAP II subunits RPB4 RPB7 (mutant) – NMR<br /> | **[[2c35]] - hRNAP II subunits RPB4 RPB7 (mutant) – NMR<br /> | ||
Line 228: | Line 273: | ||
**[[2ghq]], [[2ght]] - hRNAP II subunits RPB1 + hRNAP II C terminal<br /> | **[[2ghq]], [[2ght]] - hRNAP II subunits RPB1 + hRNAP II C terminal<br /> | ||
**[[2q5e]], [[3l0b]], [[3l0c]] - hRNAP II C terminal<br /> | **[[2q5e]], [[3l0b]], [[3l0c]] - hRNAP II C terminal<br /> | ||
- | **[[7ozn]] – pRNAP II – Cryo EM<br /> | + | **[[7ozn]], [[8b3d]], [[8b3f]] – pRNAP II – Cryo EM<br /> |
+ | **[[7w82]] – cRNAP II - maize<br /> | ||
+ | **[[7w88]] – cRNAP II – Cryo EM<br /> | ||
+ | **[[7rqs]] - AtRNAP II – Arabidopsis thaliana - Cryo EM<br /> | ||
+ | **[[8h40]] – RNAP II + NtcA – anabaena – Cryo EM<br /> | ||
**[[1nik]], [[1nt9]], [[1wcm]], [[2b8k]], [[3fki]], [[3qt1]], [[1i3q]], [[1i50]], [[1dzf]], [[5ip7]], [[5ip9]], [[5u5q]] – yRNAP II<br /> | **[[1nik]], [[1nt9]], [[1wcm]], [[2b8k]], [[3fki]], [[3qt1]], [[1i3q]], [[1i50]], [[1dzf]], [[5ip7]], [[5ip9]], [[5u5q]] – yRNAP II<br /> | ||
**[[3j1n]], [[4v1n]], [[5fmf]], [[5x51]], [[5x50]], [[5x4z]], [[7ozo]], [[7ozp]] – yRNAP II – Cryo EM<br /> | **[[3j1n]], [[4v1n]], [[5fmf]], [[5x51]], [[5x50]], [[5x4z]], [[7ozo]], [[7ozp]] – yRNAP II – Cryo EM<br /> | ||
Line 238: | Line 287: | ||
*''Eukaryotic DNA-dependent RNAP II complex with DNA/RNA'' | *''Eukaryotic DNA-dependent RNAP II complex with DNA/RNA'' | ||
+ | **[[8p4e]] - hRNAP II + RNA + DNA – Cryo EM<br /> | ||
**[[4boc]] – hRNAP + DNA<br /> | **[[4boc]] – hRNAP + DNA<br /> | ||
- | **[[5flm]] – bRNAP II | + | **[[5flm]] – bRNAP II in elongation complex - bovine<br /> |
**[[5oik]] – bRNAP II + SPT4 + SPT5 + DNA + RNA <br /> | **[[5oik]] – bRNAP II + SPT4 + SPT5 + DNA + RNA <br /> | ||
**[[1i6h]], [[4a3i]] - yRNAP II + DNA<br /> | **[[1i6h]], [[4a3i]] - yRNAP II + DNA<br /> | ||
- | **[[4v1m]] - yRNAP II + DNA – Cryo EM<br /> | + | **[[4v1m]], [[7mka]] - yRNAP II + DNA – Cryo EM<br /> |
**[[1r9s]], [[2ja5]], [[2ja6]], [[2ja7]], [[2ja8]], [[2nvq]], [[2nvt]], [[2nvx]], [[2nvy]], [[2nvz]], [[3gtg]], [[3gtj]], [[3gtk]], [[3gtl]], [[3gtm]], [[3gto]], [[3gtp]], [[3gtq]], [[3hov]], [[3how]], [[3hox]], [[3hoy]], [[3hoz]], [[3po2]], [[3po3]], [[3m3y]], [[3m4o]], [[4a3g]], [[4a93]], [[4a3b]], [[4a3c]], [[4a3d]], [[4a3e]], [[4a3f]], [[4a3j]], [[4a3k]], [[4a3l]], [[4a3m]], [[4x67]], [[4x6a]], [[4y52]], [[4y7n]], [[5c3e]], [[5c44]], [[5c4a]], [[5c4j]], [[5c4x]], [[6bqf]], [[6bm4]], [[6bm2]], [[6blp]], [[6blo]], [[5w51]], [[5w4u]] - yRNAP II + RNA + DNA<br /> | **[[1r9s]], [[2ja5]], [[2ja6]], [[2ja7]], [[2ja8]], [[2nvq]], [[2nvt]], [[2nvx]], [[2nvy]], [[2nvz]], [[3gtg]], [[3gtj]], [[3gtk]], [[3gtl]], [[3gtm]], [[3gto]], [[3gtp]], [[3gtq]], [[3hov]], [[3how]], [[3hox]], [[3hoy]], [[3hoz]], [[3po2]], [[3po3]], [[3m3y]], [[3m4o]], [[4a3g]], [[4a93]], [[4a3b]], [[4a3c]], [[4a3d]], [[4a3e]], [[4a3f]], [[4a3j]], [[4a3k]], [[4a3l]], [[4a3m]], [[4x67]], [[4x6a]], [[4y52]], [[4y7n]], [[5c3e]], [[5c44]], [[5c4a]], [[5c4j]], [[5c4x]], [[6bqf]], [[6bm4]], [[6bm2]], [[6blp]], [[6blo]], [[5w51]], [[5w4u]] - yRNAP II + RNA + DNA<br /> | ||
**[[5vvs]] - yRNAP II + RNA + DNA – Cryo EM<br /> | **[[5vvs]] - yRNAP II + RNA + DNA – Cryo EM<br /> | ||
Line 255: | Line 305: | ||
**[[3o2q]], [[3o2s]] – hRNAP II subunit α C-terminal + symplekin <br /> | **[[3o2q]], [[3o2s]] – hRNAP II subunit α C-terminal + symplekin <br /> | ||
**[[3j0k]], [[5iy6]], [[5iy7]], [[5iy8]], [[5iy9]], [[5iya]], [[5iyb]], [[5iyc]], [[5iyd]] – hRNAP II + TFIIF – Cryo EM <br /> | **[[3j0k]], [[5iy6]], [[5iy7]], [[5iy8]], [[5iy9]], [[5iya]], [[5iyb]], [[5iyc]], [[5iyd]] – hRNAP II + TFIIF – Cryo EM <br /> | ||
+ | **[[7dti]] – hRNAP II subunit RPB6 + TFIIH – NMR <br /> | ||
**[[6xre]] – hRNAP II + p53 – Cryo EM <br /> | **[[6xre]] – hRNAP II + p53 – Cryo EM <br /> | ||
**[[2lto]] - hRNAP II subunit RPB1 + Tudor domain containing protein 3<br /> | **[[2lto]] - hRNAP II subunit RPB1 + Tudor domain containing protein 3<br /> | ||
+ | **[[8jal]], [[8jaq]], [[8jar]], [[8jas]], [[8jau]], [8jav]] – hRNAP II in cullin-RING E3 ubiquitin ligase – Cryo EM <br /> | ||
+ | **[[7xt7]], [[7xtd]], [[7xti]] – hRNAP II in elongation complex + nucleosome – Cryo EM <br /> | ||
+ | **[[8bvw]], [[8byq]] – hRNAP II in pre-initiation complex + nucleosome – Cryo EM<br /> | ||
+ | **[[8p4f]] – hRNAP II in co-transcriptional capping complex – Cryo EM<br /> | ||
**[[7nvu]], [[7nvt]], [[7nvu]] - pRNAP II + DNA + TFIIA + TFIIF + TATA-box-binding protein – pig - Cryo EM<br /> | **[[7nvu]], [[7nvt]], [[7nvu]] - pRNAP II + DNA + TFIIA + TFIIF + TATA-box-binding protein – pig - Cryo EM<br /> | ||
**[[7edx]], [[7eg7]], [[7eg8]], [[7eg9]], [[7ega]], [[7egb]], [[7egc]] - pRNAP II + DNA + TFIIA + TFIIB + TFIIE + TFIIF + TATA-box-binding protein - Cryo EM<br /> | **[[7edx]], [[7eg7]], [[7eg8]], [[7eg9]], [[7ega]], [[7egb]], [[7egc]] - pRNAP II + DNA + TFIIA + TFIIB + TFIIE + TFIIF + TATA-box-binding protein - Cryo EM<br /> | ||
**[[7nw0]] - pRNAP II + DNA + TFIIB + TFIIH + MAT1 + TATA-box-binding protein - Cryo EM<br /> | **[[7nw0]] - pRNAP II + DNA + TFIIB + TFIIH + MAT1 + TATA-box-binding protein - Cryo EM<br /> | ||
+ | **[[8a40]] - pRNAP II in elongation complex + TFIIS - Cryo EM<br /> | ||
+ | **[[7und]] – pRNAP II + nucleosome – Cryo EM<br /> | ||
**[[7okx]], [[7oky]] – pRNAP II + RNA + DNA + SPT5 + ELL2 – Cryo EM<br /> | **[[7okx]], [[7oky]] – pRNAP II + RNA + DNA + SPT5 + ELL2 – Cryo EM<br /> | ||
**[[7ol0]] – pRNAP II + RNA + DNA + SPT5 – Cryo EM<br /> | **[[7ol0]] – pRNAP II + RNA + DNA + SPT5 – Cryo EM<br /> | ||
Line 268: | Line 325: | ||
**[[6gmh]], [[6ted]] – pRNAP II + RNA + DNA + DSIF + PAF + SPT6 – Cryo EM<br /> | **[[6gmh]], [[6ted]] – pRNAP II + RNA + DNA + DSIF + PAF + SPT6 – Cryo EM<br /> | ||
**[[6exv]] – pRNAP II + RNA + DNA + amatoxin – Cryo EM<br /> | **[[6exv]] – pRNAP II + RNA + DNA + amatoxin – Cryo EM<br /> | ||
+ | **[[8oew]] – pRNAP II + RNA + DNA + elongin A,B,C – Cryo EM<br /> | ||
+ | **[[8oeu]] – pRNAP II + RNA + DNA + SPT6 – Cryo EM<br /> | ||
+ | **[[8oev]], [[8of0]] – pRNAP II + RNA + DNA + elongin A,B,C + SPT6 – Cryo EM<br /> | ||
+ | **[[8p4b]], [[8p4c]] – pRNAP II in co-transcriptional capping complex – Cryo EM<br /> | ||
**[[7b7u]], [[7f4g]] – pRNAP II + hRPAP2 – Cryo EM<br /> | **[[7b7u]], [[7f4g]] – pRNAP II + hRPAP2 – Cryo EM<br /> | ||
- | **[[7nvy]], [[7nvz]] – pRNAP II in pre-initiation complex – Cryo EM<br /> | + | **[[7nvs]], [[7nvy]], [[7nvz]] – pRNAP II in pre-initiation complex – Cryo EM<br /> |
**[[7nvr]] – pRNAP II in pre-initiation complex + hmediator – Cryo EM<br /> | **[[7nvr]] – pRNAP II in pre-initiation complex + hmediator – Cryo EM<br /> | ||
**[[7b0y]] – pRNAP II in transcription complex + U1 SNRNP – Cryo EM<br /> | **[[7b0y]] – pRNAP II in transcription complex + U1 SNRNP – Cryo EM<br /> | ||
Line 275: | Line 336: | ||
**[[1y1y]] - yRNAP II + TFIIS + DNA +RNA <br /> | **[[1y1y]] - yRNAP II + TFIIS + DNA +RNA <br /> | ||
**[[1r5u]], [[3k7a]], [[3k1f]] - yRNAP II + TFIIB <br /> | **[[1r5u]], [[3k7a]], [[3k1f]] - yRNAP II + TFIIB <br /> | ||
+ | **[[7mk9]] - yRNAP II + DNA + TIIF – Cryo EM<br /> | ||
**[[4v1o]], [[5fyw]], [[5fz5]], [[5sva]] - yRNAP II + DNA + TIIF + TBP + mediator – Cryo EM<br /> | **[[4v1o]], [[5fyw]], [[5fz5]], [[5sva]] - yRNAP II + DNA + TIIF + TBP + mediator – Cryo EM<br /> | ||
**[[2l0i]] – yRNAP C-terminal + RTT103 – NMR<br /> | **[[2l0i]] – yRNAP C-terminal + RTT103 – NMR<br /> | ||
Line 280: | Line 342: | ||
**[[5vvr]] - yRNAP II + DNA + RNA + Rad26 – Cryo EM<br /> | **[[5vvr]] - yRNAP II + DNA + RNA + Rad26 – Cryo EM<br /> | ||
**[[6upx]], [[6upy]], [[6upz]], [[6uq0]], [[6uq1]], [[6uq2]], [[6uq3]], [[7rim]], [[7rip]], [[7riq]] [[7riw]], [[7rix]], [[7riy]] - yRNAP II in elongation complex<br /> | **[[6upx]], [[6upy]], [[6upz]], [[6uq0]], [[6uq1]], [[6uq2]], [[6uq3]], [[7rim]], [[7rip]], [[7riq]] [[7riw]], [[7rix]], [[7riy]] - yRNAP II in elongation complex<br /> | ||
- | **[[ | + | **[[6a5v]], [[6a5u]], [[6a5t]], [[6a5r]], [[6a5p]], [[6a5o]], [[6a5l]], [[7nkx]], [[7nky]] – yRNAP II + DNA + RNA + nucleosome – Cryo EM<br /> |
- | **[[7ml0]], [[7ml1]], [[7ml2]], [[7ml4]], [[7o4i]], [[7o4j]], [[7o4k]], [[7o4l]], [[7o72]], [[7o73]], [[7o75]] - yRNAP II + DNA + TFIIH + | + | **[[7ml0]], [[7ml1]], [[7ml2]], [[7ml4]], [[7o4i]], [[7o4j]], [[7o4k]], [[7o4l]], [[7o72]], [[7o73]], [[7o75]] - yRNAP II + DNA + TFIIH + TBP – Cryo EM<br /> |
+ | **[[7kpv]] – yRNAP II cyclin-like subunit in Cdk8 kinase module – Cryo EM<br /> | ||
+ | **[[8cen]] – yRNAP II in pre-initiation complex + mediator – Cryo EM<br /> | ||
+ | **[[7zs9]], [[7zsa]], [[7zsb]] – yRNAP II in pre-initiation complex + nucleosome – Cryo EM<br /> | ||
+ | **[[8ceo]] – yRNAP II in pre-initiation complex + nucleosome + mediator – Cryo EM<br /> | ||
+ | **[[8h0v]], [[8h0w]] – KpRNAP II in chromatosome – Komagataella phaffii - Cryo EM<br /> | ||
+ | **[[7xse]], [[7xsx]], [[7xsz]] – KpRNAP II in elongation complex + nucleosome - Cryo EM<br /> | ||
+ | **[[8he5]] – KpRNAP II in elongation complex + nucleosome + Rad26 + Elf1- Cryo EM<br /> | ||
+ | **[[7wbv]], [[7wbw]], [[7wbx]] – KpRNAP II in elongation complex + Elf1 + Spt4/5 - Cryo EM<br /> | ||
+ | **[[7xn7]] – KpRNAP II in elongation complex + Elf1 + Spt4/5 + Spt6 + Spn1 + Paf1C - Cryo EM<br /> | ||
*''Eukaryotic DNA-dependent RNAP II complex with small molecule'' | *''Eukaryotic DNA-dependent RNAP II complex with small molecule'' | ||
Line 292: | Line 363: | ||
**[[7a6h]], [[7ae1]], [[7ae3]], [[7aea]], [[7ast]], [[7d58]], [[7d59]], [[7dn3]], [[7du2]], [[7fji]], [[7fjj]] - hRNAP III – Cryo EM<br /> | **[[7a6h]], [[7ae1]], [[7ae3]], [[7aea]], [[7ast]], [[7d58]], [[7d59]], [[7dn3]], [[7du2]], [[7fji]], [[7fjj]] - hRNAP III – Cryo EM<br /> | ||
- | **[[2xub]], [[2xv4]] - hRNAP III | + | **[[8ity]], [[8iuh]] - hRNAP III in pre-initiation complex – Cryo EM<br /> |
- | **[[5afq]] - hRNAP III subunits | + | **[[2xub]], [[2xv4]] - hRNAP III subunit Rpc3<br /> |
+ | **[[5afq]] - hRNAP III subunits Rpc3 + Rpc32B<br /> | ||
+ | **[[7asu]], [[7asv]] - hRNAP III subunit Rpc5<br /> | ||
**[[2dk5]] – hRNAP III winged helix domain (mutant) – NMR<br /> | **[[2dk5]] – hRNAP III winged helix domain (mutant) – NMR<br /> | ||
**[[2yu3]] - hRNAP III winged helix domain<br /> | **[[2yu3]] - hRNAP III winged helix domain<br /> | ||
**[[2dk8]] – RNAP III RPC34 domain - mouse – NMR<br /> | **[[2dk8]] – RNAP III RPC34 domain - mouse – NMR<br /> | ||
**[[2ckz]], [[5fj9]], [[5fja]], [[6eu3]], [[6eu2]] - yRNAP III - Cryo EM<br /> | **[[2ckz]], [[5fj9]], [[5fja]], [[6eu3]], [[6eu2]] - yRNAP III - Cryo EM<br /> | ||
- | **[[5fj8]], [[6f41]] - yRNAP III in elongation complex - Cryo EM<br /> | + | **[[5fj8]], [[6f41]], [[7z1m]], [[7z1n]], [[7z1o]], [[8bws]] - yRNAP III in elongation complex - Cryo EM<br /> |
**[[6f44]], [[6f42]], [[6f40]], [[6eu1]] - yRNAP III + DNA – Cryo EM<br /> | **[[6f44]], [[6f42]], [[6f40]], [[6eu1]] - yRNAP III + DNA – Cryo EM<br /> | ||
**[[6cnf]], [[6cnd]], [[6cnc]], [[6cnb]] - yRNAP III + DNA + TFIIIB – Cryo EM<br /> | **[[6cnf]], [[6cnd]], [[6cnc]], [[6cnb]] - yRNAP III + DNA + TFIIIB – Cryo EM<br /> | ||
Line 305: | Line 378: | ||
**[[6eu0]] - yRNAP III + DNA + TFIIIB + TATA-box-binding protein – Cryo EM<br /> | **[[6eu0]] - yRNAP III + DNA + TFIIIB + TATA-box-binding protein – Cryo EM<br /> | ||
**[[6tut]] - yRNAP III complex + MAF1 – Cryo EM<br /> | **[[6tut]] - yRNAP III complex + MAF1 – Cryo EM<br /> | ||
+ | **[[7z0h]], [[7z2z]], [[7z30]], [[7z31]] - yRNAP III complex + Ty1 integrase – Cryo EM<br /> | ||
+ | **[[7z1l]] - yRNAP III pre-termination complex – Cryo EM<br /> | ||
**[[3ayh]] - fyRNAP III subunit Rpc8+Rpc9<br /> | **[[3ayh]] - fyRNAP III subunit Rpc8+Rpc9<br /> | ||
Line 312: | Line 387: | ||
**[[6rwe]], [[6ruo]], [[6rui]], [[6rrd]], [[6rqt]], [[6rql]], [[6rqh]], [[6o6c]], [[6hls]] - yRNAP – Cryo EM<br /> | **[[6rwe]], [[6ruo]], [[6rui]], [[6rrd]], [[6rqt]], [[6rql]], [[6rqh]], [[6o6c]], [[6hls]] - yRNAP – Cryo EM<br /> | ||
**[[6hlr]], [[6hlq]], [[6hko]] - yRNAP + nucleotide analog – Cryo EM<br /> | **[[6hlr]], [[6hlq]], [[6hko]] - yRNAP + nucleotide analog – Cryo EM<br /> | ||
- | **[[6j51]], [[6j50]], [[6j4z]], [[6j4y]], [[6j4x]], [[6j4w]], [[6ir9]] - yRNAP + Elf1 + Spt4 + Spt5 + | + | **[[6j51]], [[6j50]], [[6j4z]], [[6j4y]], [[6j4x]], [[6j4w]], [[6ir9]] - yRNAP + Elf1 + Spt4 + Spt5 + nucleosome – Cryo EM<br /> |
- | **[[6i84]] - yRNAP + DNA + | + | **[[6i84]] - yRNAP + DNA + nucleosome – Cryo EM<br /> |
- | **[[6gyl]], [[6gym]], [[6gyk]], [[7mei]] - yRNAP + DNA + TBP + | + | **[[6gyl]], [[6gym]], [[6gyk]], [[7mei]] - yRNAP + DNA + TBP + TFIIH – Cryo EM<br /> |
*Eukaryotic DNA-dependent RNAP IV | *Eukaryotic DNA-dependent RNAP IV | ||
- | **[[7eu0]], [[7eu1]] - | + | **[[7eu0]], [[7eu1]] - AtRNAP - Cryo EM<br /> |
- | *Eukaryotic DNA-dependent RNAP μ or DNA-directed DNA/RNA polymerase | + | *Eukaryotic DNA-dependent RNAP V |
+ | |||
+ | **[[8hyj]] - AtRNAP + KTF1 - Cryo EM<br /> | ||
+ | |||
+ | *Eukaryotic DNA-dependent RNAP I+II+III+IV+V | ||
+ | |||
+ | **[[8hil]], [[8him]] - RNAP in elongation complex – cabbage - Cryo EM<br /> | ||
+ | |||
+ | *Eukaryotic DNA-dependent RNAP μ or DNA-directed DNA/RNA polymerase mu | ||
**[[4lzd]] – hRNAP μ<br /> | **[[4lzd]] – hRNAP μ<br /> | ||
Line 328: | Line 411: | ||
**[[6ipn]], [[6ipm]], [[6ipl]], [[6ipk]], [[6ipj]], [[6ipi]], [[6iph]], [[6ak6]], [[6ak5]], [[6aeh]], [[6aec]] – hRNAP μ (mutant) + nucleotide<br /> | **[[6ipn]], [[6ipm]], [[6ipl]], [[6ipk]], [[6ipj]], [[6ipi]], [[6iph]], [[6ak6]], [[6ak5]], [[6aeh]], [[6aec]] – hRNAP μ (mutant) + nucleotide<br /> | ||
- | *Eukaryotic DNA-dependent RNAP mitochondrial | + | *Eukaryotic DNA-dependent RNAP mitochondrial or MTRPOL |
+ | **[[7pzp]], [[7pzr]] – hRNAP – Cryo EM<br /> | ||
**[[4boc]] – hRNAP + DNA<br /> | **[[4boc]] – hRNAP + DNA<br /> | ||
**[[6erq]], [[6erp]] – hRNAP + DNA + MTTFA + dimethyladenosine transferase<br /> | **[[6erq]], [[6erp]] – hRNAP + DNA + MTTFA + dimethyladenosine transferase<br /> | ||
**[[3spa]] - hRNAP + polypeptide <br /> | **[[3spa]] - hRNAP + polypeptide <br /> | ||
+ | **[[7a8p]] - hRNAP + inhibitor <br /> | ||
+ | **[[8att]], [[8atv]], [[8atw]], [[8c5s]], [[8c5u]], [[8q63]] – yRNAP in transcription initiation complex + RNA – Cryo EM<br /> | ||
+ | **[[8ap1]] – yRNAP in transcription initiation complex + GTP – Cryo EM<br /> | ||
+ | |||
*''Eukaryotic DNA primase'' | *''Eukaryotic DNA primase'' | ||
Line 347: | Line 435: | ||
**[[3lgb]], [[6di6]], [[6dhw]] - yDNAP large subunit Fe-S domain<br /> | **[[3lgb]], [[6di6]], [[6dhw]] - yDNAP large subunit Fe-S domain<br /> | ||
**[[6du0]], [[6dtz]], [[6dtv]], [[6di2]] - yDNAP large subunit Fe-S domain (mutant)<br /> | **[[6du0]], [[6dtz]], [[6dtv]], [[6di2]] - yDNAP large subunit Fe-S domain (mutant)<br /> | ||
+ | **[[7tl2]] - yDNAP large subunit C-terminal domain (mutant)<br /> | ||
*''Eukaryotic DNA primase complex'' | *''Eukaryotic DNA primase complex'' | ||
Line 357: | Line 446: | ||
**[[4bpx]] - hDNAP small (mutant) + DNA polymerase α catalytic subunit<br /> | **[[4bpx]] - hDNAP small (mutant) + DNA polymerase α catalytic subunit<br /> | ||
**[[5exr]] - hDNAP small + large subunits + DNA polymerase α catalytic subunit<br /> | **[[5exr]] - hDNAP small + large subunits + DNA polymerase α catalytic subunit<br /> | ||
+ | **[[8d96]] - hDNAP large subunit + DNA polymerase α catalytic subunit + DNA - Cryo EM<br /> | ||
+ | **[[8d0k]] [[8d9d]] - hDNAP small + large subunits + CST + DNA polymerase α catalytic subunit + DNA – Cryo EM<br /> | ||
+ | **[[7u5c]], [[8d0b]] - hDNAP small + large subunits + CST + DNA polymerase α catalytic+B subunits + DNA – Cryo EM<br /> | ||
+ | **[[7opl]] - hDNAP small + large subunits + Nsp1 + DNA polymerase α catalytic+B subunits – Cryo EM<br /> | ||
+ | **[[7tl3]], [[7tl4]] – yDNAP large subunit C terminal (mutant)<br /> | ||
+ | **[[8foc]], [[8fod]], [[8foe]], [[8foh]], [[8foj]], [[8fok]] - yDNAP small + large subunits + DNA polymerase α catalytic+B subunits – Cryo EM<br /> | ||
+ | **[[8g99]] - fDNAP large subunit + DNA polymerase α catalytic+B subunits – frog - Cryo EM<br /> | ||
+ | **[[8ucv]] - fDNAP large subunit + DNA polymerase α catalytic subunit + DNA - Cryo EM<br /> | ||
+ | **[[8g9f]] - fDNAP small+large subunits + DNA polymerase α catalytic subunit + DNA - Cryo EM<br /> | ||
+ | **[[8g9o]] - fDNAP large subunit + DNA polymerase α catalytic+B subunits + DNA - Cryo EM<br /> | ||
+ | **[[8g9l]] - fDNAP large subunit + DNA polymerase α catalytic+B subunits + DNA + RNA - Cryo EM<br /> | ||
*''Bacterial DNA primase'' | *''Bacterial DNA primase'' | ||
Line 367: | Line 467: | ||
**[[5w33]] - MtudnaG RPD 112-432<br /> | **[[5w33]] - MtudnaG RPD 112-432<br /> | ||
**[[5z51]] - MtudnaG helicase-binding domain 482-637<br /> | **[[5z51]] - MtudnaG helicase-binding domain 482-637<br /> | ||
- | **[[5vaz]] – | + | **[[5vaz]] – PadnaG <br /> |
**[[4im9]] – VcdnaG C-terminal<br /> | **[[4im9]] – VcdnaG C-terminal<br /> | ||
**[[3m1m]] – DNAP RNA polymerase domain – ''Sulfolobus islandicus''<br /> | **[[3m1m]] – DNAP RNA polymerase domain – ''Sulfolobus islandicus''<br /> | ||
Line 375: | Line 475: | ||
**[[1g71]] - PfDNAP small subunit<br /> | **[[1g71]] - PfDNAP small subunit<br /> | ||
**[[4e2k]] – SaDNAP – ''Staphylococcus aureus''<br /> | **[[4e2k]] – SaDNAP – ''Staphylococcus aureus''<br /> | ||
+ | **[[7ola]], [[7om0]] – SaDNAP – Cryo EM<br /> | ||
**[[2lzn]] – SaDNAP C terminal – NMR<br /> | **[[2lzn]] – SaDNAP C terminal – NMR<br /> | ||
**[[5guj]] – BsdnaG RNAP domain <br /> | **[[5guj]] – BsdnaG RNAP domain <br /> | ||
- | **[[6gt7]] – SiDNAP PRN1 helix bundle domain – | + | **[[6gt7]] – SiDNAP PRN1 helix bundle domain – Sulfolobus islandicus - NMR<br /> |
**[[6gvu]] – SiDNAP PRN1 helix bundle domain + DNA - NMR<br /> | **[[6gvu]] – SiDNAP PRN1 helix bundle domain + DNA - NMR<br /> | ||
**[[6gvq]], [[6gvt]] – SiDNAP PRN1 helix bundle domain + DNA + ATP - NMR<br /> | **[[6gvq]], [[6gvt]] – SiDNAP PRN1 helix bundle domain + DNA + ATP - NMR<br /> | ||
Line 386: | Line 487: | ||
**[[4m4w]] - GsdnaG helicase binding domain + helicase + DnaI<br /> | **[[4m4w]] - GsdnaG helicase binding domain + helicase + DnaI<br /> | ||
**[[3b39]] – EcdnaG catalytic domain + DNA<br /> | **[[3b39]] – EcdnaG catalytic domain + DNA<br /> | ||
+ | **[[7t22]], [[7t23]] – EcdnaG C-terminal (mutant) + helicase + DNA – Cryo EM<br /> | ||
**[[5w36]], [[5w35]], [[5w34]] - MtudnaG + DNA<br /> | **[[5w36]], [[5w35]], [[5w34]] - MtudnaG + DNA<br /> | ||
**[[1v34]] - PhDNAP small subunit + UTP<br /> | **[[1v34]] - PhDNAP small subunit + UTP<br /> | ||
**[[4edg]], [[4edk]], [[4edr]], [[4edt]], [[4edv]], [[4ee1]] – SaDNAP + nucleotide<br /> | **[[4edg]], [[4edk]], [[4edr]], [[4edt]], [[4edv]], [[4ee1]] – SaDNAP + nucleotide<br /> | ||
**[[5of3]] - SsDNAP small + large subunit + protein<br /> | **[[5of3]] - SsDNAP small + large subunit + protein<br /> | ||
+ | **[[7uy8]] - DNAP small + large subunits + DNA polymerase α catalytic+B subunits – Tetrahymena thermophile - Cryo EM<br /> | ||
+ | |||
*''Phage DNA primase'' | *''Phage DNA primase'' | ||
Line 396: | Line 500: | ||
**[[6k9c]], [[6k9e]], [[6lrb]] - NrsDNAP C terminal 305-718 <br /> | **[[6k9c]], [[6k9e]], [[6lrb]] - NrsDNAP C terminal 305-718 <br /> | ||
**[[6jon]], [[6jop]], [[6joq]], [[6k9a]] - NrsDNAP N terminal + nucleotide<br /> | **[[6jon]], [[6jop]], [[6joq]], [[6k9a]] - NrsDNAP N terminal + nucleotide<br /> | ||
+ | **[[8dwj]] – T4DNAP + RNA + DNA – Escherichia phage T4 – Cryo EM<br /> | ||
+ | **[[8dvf]], [[8dvi]], [[8dw6]] – T4DNAP + helicase + DNA – Cryo EM<br /> | ||
+ | **[[8gao]] – T4DNAP + helicase + DNA + RNA – Cryo EM<br /> | ||
*''RNA polymerase from Bacteriophage T7 or DNA primase/helicase or GP4'' | *''RNA polymerase from Bacteriophage T7 or DNA primase/helicase or GP4'' | ||
Line 407: | Line 514: | ||
**[[1cez]], [[1h38]], [[1qln]], [[2pi4]], [[2pi5]] - T7RNAP + DNA<br /> | **[[1cez]], [[1h38]], [[1qln]], [[2pi4]], [[2pi5]] - T7RNAP + DNA<br /> | ||
**[[6n7v]], [[6n7t]], [[6n7s]], [[6n7n]], [[6n7i]] - T7RNAP (mutant) + DNA + TTP – Cryo EM<br /> | **[[6n7v]], [[6n7t]], [[6n7s]], [[6n7n]], [[6n7i]] - T7RNAP (mutant) + DNA + TTP – Cryo EM<br /> | ||
- | **[[1msw]], [[1s0v]], [[1s76]], [[1s77]], [[3e2e]], [[3e3j]] - T7RNAP in elongation complex<br /> | + | **[[1msw]], [[1s0v]], [[1s76]], [[1s77]], [[3e2e]], [[3e3j]], [[8dh0]], [[8dh1]], [[8dh2]], [[8dh3]], [[8dh4]], [[8dh5]] - T7RNAP in elongation complex<br /> |
**[[6n9x]], [[6n9w]], [[6n9v]], [[6n9u]] - T7RNAP (mutant) + GP5 + DNA + RNA – Cryo EM<br /> | **[[6n9x]], [[6n9w]], [[6n9v]], [[6n9u]] - T7RNAP (mutant) + GP5 + DNA + RNA – Cryo EM<br /> | ||
**[[5ikn]] - T7RNAP (mutant) + GP5 + thioredoxin<br /> | **[[5ikn]] - T7RNAP (mutant) + GP5 + thioredoxin<br /> | ||
Line 413: | Line 520: | ||
*RNA-dependent RNAP or cap-snatching endonuclease | *RNA-dependent RNAP or cap-snatching endonuclease | ||
+ | **[[7roz]] – AtRNAP 2 – Cryo EM<br /> | ||
**[[3phu]], [[1khv]], [[1khw]] – HfRNAP L RNA-directed – Hemorrhagic fever virus<br /> | **[[3phu]], [[1khv]], [[1khw]] – HfRNAP L RNA-directed – Hemorrhagic fever virus<br /> | ||
**[[5v5i]], [[5v5h]], [[5v5g]] – HfRNAP L + ubiquitin<br /> | **[[5v5i]], [[5v5h]], [[5v5g]] – HfRNAP L + ubiquitin<br /> | ||
Line 422: | Line 530: | ||
**[[1tql]], [[2ijd]], [[2ijf]], [[4nlo]], [[4nlp]], [[4nlq]], [[4nlr]], [[4nls]], [[4nlt]], [[4nlu]], [[4nlv]], [[4nlw]], [[4nlx]], [[4nly]], [[4r0e]] - PoRNAP (mutant) <br /> | **[[1tql]], [[2ijd]], [[2ijf]], [[4nlo]], [[4nlp]], [[4nlq]], [[4nlr]], [[4nls]], [[4nlt]], [[4nlu]], [[4nlv]], [[4nlw]], [[4nlx]], [[4nly]], [[4r0e]] - PoRNAP (mutant) <br /> | ||
**[[2xi5]], [[2xi7]] – BvRNAP L N-terminal – Bunyavirus<br /> | **[[2xi5]], [[2xi7]] – BvRNAP L N-terminal – Bunyavirus<br /> | ||
- | **[[3jsb]] – | + | **[[7x6s]] – LcvRNAP L– Lymphocytic choriomengitis virus - Cryo EM<br /> |
+ | **[[3jsb]] – LcvRNAP L (mutant) <br /> | ||
**[[2wk4]], [[2uut]], [[2uuw]] – SvRNAP (mutant) – Sapporo virus<br /> | **[[2wk4]], [[2uut]], [[2uuw]] – SvRNAP (mutant) – Sapporo virus<br /> | ||
**[[2ckw]] - SvRNAP residues 1135-1649 <br /> | **[[2ckw]] - SvRNAP residues 1135-1649 <br /> | ||
**[[3nky]], [[4wyl]], [[4wyw]], [[6gvv]] - FmRNAP (mutant) - Foot-and-mouth virus<br /> | **[[3nky]], [[4wyl]], [[4wyw]], [[6gvv]] - FmRNAP (mutant) - Foot-and-mouth virus<br /> | ||
**[[1hhs]], [[4a8o]], [[4b02]], [[1hi8]], [[5fj6]] – P6RNAP – Bacteriophage φ-6<br /> | **[[1hhs]], [[4a8o]], [[4b02]], [[1hi8]], [[5fj6]] – P6RNAP – Bacteriophage φ-6<br /> | ||
+ | **[[7ogp]], [[7ogr]] – RNAP – Bacteriophage φ-kz – Cryo EM<br /> | ||
+ | **[[7s00]], [[7um1]] – AR9RNAP – Bacteriophage AR9 – Cryo EM<br /> | ||
+ | **[[7s01]], [[7um0]] – AR9RNAP + DNA – Cryo EM<br /> | ||
**[[2jl9]], [[2jlf]], [[1wac]] – P6RNAP (mutant) <br /> | **[[2jl9]], [[2jlf]], [[1wac]] – P6RNAP (mutant) <br /> | ||
**[[5fj7]] – P6RNAP + major inner protein P1 <br /> | **[[5fj7]] – P6RNAP + major inner protein P1 <br /> | ||
Line 450: | Line 562: | ||
**[[3ddk]] – CvRNAP residues 1724-2185 <br /> | **[[3ddk]] – CvRNAP residues 1724-2185 <br /> | ||
**[[3nah]], [[3nai]], [[3qid]], [[3uqs]] – MnvRNAP – Murine norovirus<br /> | **[[3nah]], [[3nai]], [[3qid]], [[3uqs]] – MnvRNAP – Murine norovirus<br /> | ||
- | **[[4wfx]], [[4wfy]], [[4wfz]] – CvRNAP | + | **[[4wfx]], [[4wfy]], [[4wfz]] – CvRNAP RdrP domain (mutant)<br /> |
- | **[[2j7n]], [[2j7o]] – | + | **[[2j7n]], [[2j7o]] – NcRNAP residues 381-1402 – Neurospora crassa<br /> |
**[[4gzk]], [[4ieg]] – RNAP – cystovirus 12<br /> | **[[4gzk]], [[4ieg]] – RNAP – cystovirus 12<br /> | ||
**[[4i1t]] – RNAP L – Pichinde virus <br /> | **[[4i1t]] – RNAP L – Pichinde virus <br /> | ||
**[[5chs]] – VsivRNAP L N-terminal – Vescicular stomatitis Indiana virus <br /> | **[[5chs]] – VsivRNAP L N-terminal – Vescicular stomatitis Indiana virus <br /> | ||
- | **[[4xha]], [[4xhi]] – TavRNAP – Thosea asigna virus <br /> | + | **[[4xha]], [[4xhi]], [[7om2]], [[7om9]] – TavRNAP RdRP – Thosea asigna virus <br /> |
**[[6l42]] – RNAP L – Phlebovirus – Cryo EM<br /> | **[[6l42]] – RNAP L – Phlebovirus – Cryo EM<br /> | ||
**[[6l4r]] – RNAP – Enterovirus <br /> | **[[6l4r]] – RNAP – Enterovirus <br /> | ||
Line 461: | Line 573: | ||
**[[6ntv]] – SftvRNAP endonuclease domain 1-226<br /> | **[[6ntv]] – SftvRNAP endonuclease domain 1-226<br /> | ||
**[[6lkx]] – RNAP – Porcine respiratory virus <br /> | **[[6lkx]] – RNAP – Porcine respiratory virus <br /> | ||
- | **[[6kld]] – | + | **[[6kld]], [[7vh2]], [[7vh3]] – MavRNAP L – Machupo virus – Cryo EM<br /> |
- | **[[6klc]] – LvRNAP L – Lassa virus – Cryo EM<br /> | + | **[[6klc]], [[7och]], [[7oe3]], [[7oe7]] – LvRNAP L – Lassa virus – Cryo EM<br /> |
- | **[[4miw]], [[5izh]], [[5j1n]], [[5j1p]] – | + | **[[4miw]], [[5izh]], [[5j1n]], [[5j1p]] – LvRNAP L N terminal <br /> |
- | **[[4mtp]] – | + | **[[4mtp]], [[7d6n]] – EnvRNAP RdrP module – Encephalitis virus <br /> |
**[[4cgx]], [[4chc]] – TvRNAP N terminal – Thogoto virus <br /> | **[[4cgx]], [[4chc]] – TvRNAP N terminal – Thogoto virus <br /> | ||
**[[4chd]] – TvRNAP 627 domain <br /> | **[[4chd]] – TvRNAP 627 domain <br /> | ||
**[[4che]], [[4chf]] – TvRNAP cap-binding domain <br /> | **[[4che]], [[4chf]] – TvRNAP cap-binding domain <br /> | ||
- | **[[5fsw]] - NvRNAP C terminal – | + | **[[5fsw]] - NvRNAP C terminal – Thielavia terrestris<br /> |
- | **[[ | + | **[[5hsb]] – RNAP – Andes virus<br /> |
- | **[[5ize]] – | + | **[[5ize]] – HavRNAP L – Hantaan virus<br /> |
+ | **[[8c4s]] – HavRNAP L – Cryo EM<br /> | ||
**[[5ltf]] – LcmvRNAP L – Lymphocytic choriomeningitis mammarenavirus<br /> | **[[5ltf]] – LcmvRNAP L – Lymphocytic choriomeningitis mammarenavirus<br /> | ||
**[[5lts]] - LcmvRNAP (mutant)<br /> | **[[5lts]] - LcmvRNAP (mutant)<br /> | ||
Line 479: | Line 592: | ||
**[[6dx2]] - RNAP OTU domain – Dera Ghazi khan virus<br /> | **[[6dx2]] - RNAP OTU domain – Dera Ghazi khan virus<br /> | ||
**[[6dx1]], [[6dwx]] - RNAP OTU domain – Qulybus virus<br /> | **[[6dx1]], [[6dwx]] - RNAP OTU domain – Qulybus virus<br /> | ||
+ | **[[7eei]] – RNAP (mutant) – Rift valley fever virus – Cryo EM<br /> | ||
*''RNA-dependent RNAP complex with RNA'' | *''RNA-dependent RNAP complex with RNA'' | ||
Line 485: | Line 599: | ||
**[[3ol6]], [[2jlg]], [[4k4s]], [[4k4t]], [[4k4u]], [[4k4v]], [[4k4w]] – PoRNAP (mutant) + RNA <br /> | **[[3ol6]], [[2jlg]], [[4k4s]], [[4k4t]], [[4k4u]], [[4k4v]], [[4k4w]] – PoRNAP (mutant) + RNA <br /> | ||
**[[3ol7]], [[3ol8]], [[3ol9]], [[3ola]], [[3olb]] - PoRNAP (mutant) + RNA + nucleotide<br /> | **[[3ol7]], [[3ol8]], [[3ol9]], [[3ola]], [[3olb]] - PoRNAP (mutant) + RNA + nucleotide<br /> | ||
+ | **[[1wne]] – FmRNAP + RNA <br /> | ||
**[[3klv]], [[3kmq]], [[3kms]], [[3kna]], [[3nl0]], [[3nma]], [[4iqx]], [[4wzm]], [[4wzq]], [[4x2b]], [[5jxs]] – FmRNAP (mutant) + RNA<br /> | **[[3klv]], [[3kmq]], [[3kms]], [[3kna]], [[3nl0]], [[3nma]], [[4iqx]], [[4wzm]], [[4wzq]], [[4x2b]], [[5jxs]] – FmRNAP (mutant) + RNA<br /> | ||
**[[3koa]] - FmRNAP (mutant) + RNA + nucleotide<br /> | **[[3koa]] - FmRNAP (mutant) + RNA + nucleotide<br /> | ||
- | **[[1wne]] – FmRNAP + RNA <br /> | ||
**[[2e9r]], [[2e9t]], [[2e9z]], [[2ec0]] - FmRNAP + RNA + inhibitor<br /> | **[[2e9r]], [[2e9t]], [[2e9z]], [[2ec0]] - FmRNAP + RNA + inhibitor<br /> | ||
**[[1uvi]], [[1uvl]], [[1uvm]], [[1uvn]], [[4a8f]], [[4a8k]], [[4a8m]], [[4a8q]], [[4a8s]], [[4a8w]], [[4a8y – P6RNAP + RNA<br /> | **[[1uvi]], [[1uvl]], [[1uvm]], [[1uvn]], [[4a8f]], [[4a8k]], [[4a8m]], [[4a8q]], [[4a8s]], [[4a8w]], [[4a8y – P6RNAP + RNA<br /> | ||
Line 493: | Line 607: | ||
**[[2r7r]], [[2r7s]], [[2r7t]], [[2r7u]], [[2r7v]], [[2r7w]], [[2r7x]] – SrRNAP + RNA<br /> | **[[2r7r]], [[2r7s]], [[2r7t]], [[2r7u]], [[2r7v]], [[2r7w]], [[2r7x]] – SrRNAP + RNA<br /> | ||
**[[5amq]], [[5amr]] – BvRNAP + RNA<br /> | **[[5amq]], [[5amr]] – BvRNAP + RNA<br /> | ||
+ | **[[7ork]], [[7orl]], [[7orj]], [[7orm]] – BvRNAP + RNA – Cryo EM<br /> | ||
**[[4k50]] – RNAP + RNA – Human rhinovirus<br /> | **[[4k50]] – RNAP + RNA – Human rhinovirus<br /> | ||
**[[3c2p]], [[3c3l]], [[3c46]], [[3q0a]] - N4RNAP polymerase domain + promoter DNA<br /> | **[[3c2p]], [[3c3l]], [[3c46]], [[3q0a]] - N4RNAP polymerase domain + promoter DNA<br /> | ||
Line 503: | Line 618: | ||
**[[6kle]], [[6klh]] – MvRNAP L + RNA – Cryo EM<br /> | **[[6kle]], [[6klh]] – MvRNAP L + RNA – Cryo EM<br /> | ||
**[[6z6g]], [[6z8k]] – RNAP L + RNA – La crosse orthobunyavirus - Cryo EM<br /> | **[[6z6g]], [[6z8k]] – RNAP L + RNA – La crosse orthobunyavirus - Cryo EM<br /> | ||
+ | **[[8ci5]] – RNAP L + RNA – sin nombre orthohantavirus - Cryo EM<br /> | ||
+ | **[[7y7q]] – NcRNAP + RNA + GTP<br /> | ||
+ | **[[7y7p]] – NcRNAP + RNA + AMPNPP<br /> | ||
+ | **[[7y7r]] – NcRNAP + RNA + DNA + GTP<br /> | ||
+ | **[[7ela]], [[7oea]], [[7oeb]], [[7ojj]], [[7ojk]], [[7ojl]], [[7ojn]] – LvRNAP + RNA – Cryo EM<br /> | ||
+ | **[[8c4t]], [[8c4u]], [[8c4v]] – HavRNAP L + RNA – Cryo EM<br /> | ||
+ | **[[8as6]], [[8as7]], [[8asb]], [[8asd]], [[8asg]] – RNAP L + RNA – SFTS virus - Cryo EM<br /> | ||
+ | **[[7om7]], [[7oma]] – TavRNAP RdrP domain + RNA<br /> | ||
*''RNA-dependent RNAP complex with protein'' | *''RNA-dependent RNAP complex with protein'' | ||
Line 509: | Line 632: | ||
**[[3phx]], [[3pse]] – HfRNAP + ISG15<br /> | **[[3phx]], [[3pse]] – HfRNAP + ISG15<br /> | ||
**[[6u5o]] – HmpvRNAP L + phosphoprotein – Cryo EM<br /> | **[[6u5o]] – HmpvRNAP L + phosphoprotein – Cryo EM<br /> | ||
- | **[[6pzk]], [[6uen]] – RNAP L + phosphoprotein – Human respiratory syncytial virus - Cryo EM<br /> | + | **[[8fpj]] – HmpvRNAP L + MRK-1 – Cryo EM<br /> |
+ | **[[6pzk]], [[6uen]], [[8fpi]], [[8fu3]] – RNAP L + phosphoprotein – Human respiratory syncytial virus - Cryo EM<br /> | ||
**[[6v85]], [[6v86]] – RNAP L + phosphoprotein – Parainfluenza virus <br /> | **[[6v85]], [[6v86]] – RNAP L + phosphoprotein – Parainfluenza virus <br /> | ||
**[[6po2]], [[6pns]] – RNAP + VP3 – Bluetongue virus - Cryo EM<br /> | **[[6po2]], [[6pns]] – RNAP + VP3 – Bluetongue virus - Cryo EM<br /> | ||
- | **[[2d7s]], [[2f8e]] – FmRNAP + VPG <br /> | + | **[[2d7s]], [[2f8e]], [[8c1n]] – FmRNAP + VPG <br /> |
+ | **[[8c2p]] – FmRNAP + protein 3B-3 <br /> | ||
**[[5y3d]] – MnvRNAP + VPG <br /> | **[[5y3d]] – MnvRNAP + VPG <br /> | ||
**[[3cdw]] - CvRNAP + POP + VPG<br /> | **[[3cdw]] - CvRNAP + POP + VPG<br /> | ||
Line 526: | Line 651: | ||
**[[6k32]] – RvARNAP + Vp1 + Vp4 + RNA – Cypovirus 1 - Cryo EM<br /> | **[[6k32]] – RvARNAP + Vp1 + Vp4 + RNA – Cypovirus 1 - Cryo EM<br /> | ||
**[[6oar]], [[6oat]] – RNAP OUT domain + ISG17 – Kupe virus <br /> | **[[6oar]], [[6oat]] – RNAP OUT domain + ISG17 – Kupe virus <br /> | ||
- | **[[6xqb]], [[7bzf]], [[7c2k]] – | + | **[[7yer]], [[7yes]], [[8jsl]], [[8jsm]], [[8jsn]] – EbvRNAP + Vp35 – Ebola virus – Cryo EM<br /> |
+ | **[[7yet]] – EbvRNAP + Vp35+ drug – Cryo EM<br /> | ||
+ | **[[7ckl]], [[7ckm]], [[7elb]], [[7vgq]], [[7vh1]] – MavRNAP L + matrix protein Z – Cryo EM<br /> | ||
+ | **[[7el9]], [[7elc]] – MavRNAP L + matrix protein Z + RNA – Cryo EM<br /> | ||
+ | **[[7x6v]] – LcvRNAP L + matrix protein Z – Cryo EM<br /> | ||
+ | **[[7eju]] – RNAP L + matrix protein Z – Junin virus - Cryo EM<br /> | ||
+ | **[[7yot]], [[7yov]], [[7you]] – RNAP + P protein – Newcastle disease virus – Cryo EM<br /> | ||
+ | |||
+ | *''RNA-dependent RNAP from SARS-COV2” | ||
+ | |||
+ | **[[7btf]], [[7bw4]] – SCRNAP + non-structural proteins – SARS-COV-2 - Cryo EM<br /> | ||
+ | **[[6xqb]], [[7bzf]], [[7c2k]], [[7uo7]], [[7uo9]], [[7uob]], [[7uoe]], [[8gwb]], [[8gwe]] – SCRNAP + non-structural proteins + RNA - Cryo EM<br /> | ||
+ | **[[7aap]], [[7b38]], [[7b3c]], [[7ctt]], [[7d4f]], [[7dfg]], [[7dfh]], [[7doi]], [[7dok]], [[7l1f]], [[7p35]], [[7uo4]] – SCRNAP + non-structural proteins + RNA + drug - Cryo EM<br /> | ||
+ | **[[7ed5]], [[8gwn]], [[8gwo]] – SCRNAP + non-structural proteins + RNA + inhibitor - Cryo EM<br /> | ||
+ | **[[7krn]], [[7rdx]], [[7rdy]], [[7rdz]], [[7re0]], [[7re1]], [[7re2]], [[7re3]] – SCRNAP + non-structural proteins + RNA + helicase - Cryo EM<br /> | ||
+ | **[[7cxm]], [[7cxn]], [[7cyq]] – SCRNAP 4393-5324 (mutant)+ non-structural proteins + RNA + helicase - Cryo EM<br /> | ||
+ | **[[7oyg]] – SCRNAP + non-structural proteins + RNA + PP1AB - Cryo EM<br /> | ||
+ | **[[8gy6]] – SCRNAP + non-structural proteins + RNA + toxin - Cryo EM<br /> | ||
+ | **[[8gwf]], [[8gwg]] – SCRNAP + non-structural proteins + RNA + helicase + inhibitor - Cryo EM<br /> | ||
+ | **[[7eiz]] – SCRNAP + non-structural proteins + RNA + methyltransferase + exoribonuclease - Cryo EM<br /> | ||
*''RNA-dependent RNAP complex with small molecule'' | *''RNA-dependent RNAP complex with small molecule'' | ||
Line 551: | Line 695: | ||
**[[6mvo]] – RNAP (mutant) + inhibitor – Hepacivirus C<br /> | **[[6mvo]] – RNAP (mutant) + inhibitor – Hepacivirus C<br /> | ||
**[[6xya]] – SftvRNAP cap-binding domain 1695-1810 + GTP <br /> | **[[6xya]] – SftvRNAP cap-binding domain 1695-1810 + GTP <br /> | ||
+ | **[[8gwi]] – SCRNAP + inhibitor - Cryo EM<br /> | ||
+ | *Influenza virus polymerase acidic protein (or PA or subunit P2) N terminal 1-256; C-terminal 257-716 | ||
- | + | **[[2w69]], [[3ebj]], [[4p9a]], [[4nfz]], [[4avq]], [[4e5e]], [[4zqq]], [[5jht]], [[5jhv]], [[5des], [[7xgc]]] - IvRNAP PA N terminal – Influenza virus<br /> | |
- | + | ||
- | **[[4p9a]], [[4nfz]], [[4avq]], [[4e5e]], [[4zqq]], [[5jht]], [[5jhv]], [[5des]] - IvRNAP PA N terminal – Influenza virus<br /> | + | |
**[[5d2o]], [[5czn]], [[3hw6]], [[6fsb]] - IvRNAP PA N terminal (mutant) <br /> | **[[5d2o]], [[5czn]], [[3hw6]], [[6fsb]] - IvRNAP PA N terminal (mutant) <br /> | ||
- | + | **[[3hw3]], [[3hw4]], [[3hw5]] - IvRNAP PA residues N-terminal (mutant) + Mn + nucleotide <br /> | |
- | + | **[[4w9s]], [[5fdd]], [[5fdg]], [[5i13]], [[5ieq]], [[5if2]], [[5if5]], [[5if7]], [[5if8]], [[5ifb]], [[5ifc]], [[5ifd]], [[5wa6]], [[5wa7]], [[5wb3]], [[5wap]], [[5w9g]], [[5w92]], [[5w44]], [[5v0u]], [[6nem]], [[6nel]], [[6e6x]], [[6e6w]], [[6e6v]], [[6dcz]], [[6dcy]], [[5ega]], [[5cl0]], [[5cgv]], [[5ccy]], [[4mk5]], [[4mk2]], [[4mk1]], [[4awm]], [[4awk]], [[4awh]], [[4awg]], [[4awf]], [[4e5f]], [[4e5g]], [[4e5h]], [[4e5i]], [[4e5j]], [[4e5l]], [[4yyl]], [[4zhz]], [[4zi0]], [[6fs7]], [[6fs6]], [[6fs8]], [[4avl]], [[4avg]], [[6yem]], [[7mty]], [[7mx0]], [[7n55]], [[7n68]], [[7v04]], [[8ctf]] – IvRNAP PA N terminal + inhibitor<br /> | |
- | **[[3hw3]], [[3hw4]], [[3hw5]] - IvRNAP PA residues | + | **[[5wg9]], [[5wfz]], [[5wfw]], [[5wfm]], [[5wf3]], [[5wei]], [[5wef]], [[5web]], [[5we9]], [[5we7]], [[5wdw]], [[5wdn]], [[5wdc]], [[5wct]], [[5wcs]], [[5w73]], [[5w7u]], [[5w3i]], [[5vrj]], [[5vqn]], [[5vpx]], [[5vpt]], [[5vp8]], [[6e4c]], [[6e3p]], [[6e3o]], [[6e3n]], [[6e3m]], [[6e0q]], [[6dzq]], [[5deb]], [[5dbs]], [[5d9j]], [[5d8u]], [[5d4g]], [[5d42]], [[6fs9]], [[7ml8]], [[7rkp]] – IvRNAP PA N terminal (mutant) + inhibitor<br /> |
- | **[[4w9s]], [[5fdd]], [[5fdg]], [[5i13]], [[5ieq]], [[5if2]], [[5if5]], [[5if7]], [[5if8]], [[5ifb]], [[5ifc]], [[5ifd]], [[5wa6]], [[5wa7]], [[5wb3]], [[5wap]], [[5w9g]], [[5w92]], [[5w44]], [[5v0u]], [[6nem]], [[6nel]], [[6e6x]], [[6e6w]], [[6e6v]], [[6dcz]], [[6dcy]], [[5ega]], [[5cl0]], [[5cgv]], [[5ccy]], [[4mk5]], [[4mk2]], [[4mk1]], [[4awm]], [[4awk]], [[4awh]], [[4awg]], [[4awf]], [[4e5f]], [[4e5g]], [[4e5h]], [[4e5i]], [[4e5j]], [[4e5l]], [[4yyl]], [[4zhz]], [[4zi0]], [[6fs7]], [[6fs6]], [[6fs8]], [[4avl]], [[4avg]], [[6yem]] – IvRNAP PA N terminal + inhibitor<br /> | + | **[[4iuj]] - IvRNAP PA C-terminal<br /> |
- | **[[5wg9]], [[5wfz]], [[5wfw]], [[5wfm]], [[5wf3]], [[5wei]], [[5wef]], [[5web]], [[5we9]], [[5we7]], [[5wdw]], [[5wdn]], [[5wdc]], [[5wct]], [[5wcs]], [[5w73]], [[5w7u]], [[5w3i]], [[5vrj]], [[5vqn]], [[5vpx]], [[5vpt]], [[5vp8]], [[6e4c]], [[6e3p]], [[6e3o]], [[6e3n]], [[6e3m]], [[6e0q]], [[6dzq]], [[5deb]], [[5dbs]], [[5d9j]], [[5d8u]], [[5d4g]], [[5d42]], [[6fs9]] – IvRNAP PA N terminal (mutant) + inhibitor<br /> | + | **[[7zpy]] – IvRNAP PA C terminal + inhibitor<br /> |
Line 568: | Line 712: | ||
**[[4enf]], [[4u6o]], [[4j2r]], [[2vqz]], [[5ef9]], [[5eg9]] – IvRNAP PB2 cap-binding domain<br /> | **[[4enf]], [[4u6o]], [[4j2r]], [[2vqz]], [[5ef9]], [[5eg9]] – IvRNAP PB2 cap-binding domain<br /> | ||
**[[3wi0]] – IvRNAP PB2 cap-binding domain (mutant)<br /> | **[[3wi0]] – IvRNAP PB2 cap-binding domain (mutant)<br /> | ||
+ | **[[7as2]], [[7as3]] – IvRNAP PB2 cap-binding domain (mutant) + VX<br /> | ||
+ | **[[7nft]] – IvRNAP PB2 cap-binding domain + nanobody<br /> | ||
**[[3cw4]] - IvRNAP PB2 627 + NLS domains <br /> | **[[3cw4]] - IvRNAP PB2 627 + NLS domains <br /> | ||
**[[2gmo]] - IvRNAP PB2 627 + NLS domains - NMR<br /> | **[[2gmo]] - IvRNAP PB2 627 + NLS domains - NMR<br /> | ||
**[[4eqk]], [[5efa]], [[5efc]] – IvRNAP PB2 cap-binding domain + GTP<br /> | **[[4eqk]], [[5efa]], [[5efc]] – IvRNAP PB2 cap-binding domain + GTP<br /> | ||
**[[4nce]], [[3wi1]] – IvRNAP PB2 cap-binding domain (mutant) + GTP derivative<br /> | **[[4nce]], [[3wi1]] – IvRNAP PB2 cap-binding domain (mutant) + GTP derivative<br /> | ||
- | + | **[[4p1u]], [[4yd0]], [[5buh]], [[5jun]], [[5jur]], [[7as0]], [[7xme]] - IvRNAP PB2 cap-binding domain + inhibitor<br /> | |
- | **[[4p1u]], [[4yd0]], [[5buh]], [[5jun]], [[5jur]] - IvRNAP PB2 cap-binding domain + inhibitor<br /> | + | **[[4ncm]], [[7as1]] – IvRNAP PB2 cap-binding domain (mutant) + inhibitor<br /> |
**[[6euy]], [[6eux]], [[6euv]] - IvRNAP PB2 cap-binding + midlink domains + inhibitor<br /> | **[[6euy]], [[6eux]], [[6euv]] - IvRNAP PB2 cap-binding + midlink domains + inhibitor<br /> | ||
**[[5wl0]] - IvRNAP PB2 cap-binding + midlink + 627 + NLS domains + inhibitor<br /> | **[[5wl0]] - IvRNAP PB2 cap-binding + midlink + 627 + NLS domains + inhibitor<br /> | ||
Line 595: | Line 741: | ||
**[[2ztt]], [[3a1g]] - IvRNAP PB1 C terminal + RNAP PB2 N terminal<br /> | **[[2ztt]], [[3a1g]] - IvRNAP PB1 C terminal + RNAP PB2 N terminal<br /> | ||
**[[3j9b]] - IvRNAP PB1+PB2 N terminal + RNA<br /> | **[[3j9b]] - IvRNAP PB1+PB2 N terminal + RNA<br /> | ||
+ | |||
+ | *Influenza virus RNAP PB1+P2+P3 | ||
+ | |||
+ | **[[7zpm]] - IvRNAP PB1+P2+P3 – Cryo EM<br /> | ||
+ | **[[7nha]], [[7nhc]], [[7nhx]], [[7zpl]], [[8h69]] - IvRNAP PB1+P2+P3 + RNA – Cryo EM<br /> | ||
+ | **[[7ni0]], [[7nik]], [[7nil]], [[7nir]], [[7nis]], [[7nj3]], [[7nj4]], [[7nj5]], [[7nj7]], [[7nk1]], [[7nk2]], [[7nk4]], [[7nk6]], [[7nk8]], [[7nka]], [[7nkc]], [[7nki]], [[7nkr]] - IvRNAP PB1+P2+P3 + RNA + nanobody – Cryo EM<br /> | ||
+ | **[[7qtl]], [[7r0e]], [[7r1f]], [[8bdr]], [[8be0]], [[8bek]], [[8bf5]] - IvRNAP PB1+P2+P3 + RNA + mRNA – Cryo EM<br /> | ||
+ | **[[7z42]] - IvRNAP PB1+P2+P3 + RNA + RPB1 peptide – Cryo EM<br /> | ||
*Influenza virus RNAP PA+PB1+PB2 (subunits P1+p2+p3) | *Influenza virus RNAP PA+PB1+PB2 (subunits P1+p2+p3) |
Revision as of 09:08, 13 November 2023
Updated on 13-November-2023 - For a general description of the protein see RNA polymerase {{#tree:id=OrganizedByTopic|openlevels=0|
- Prokaryotic DNA-dependent RNAP
- 2y0s – SsRNAP – Sulfolobus shibata
- 1ryq - PfRNAP subunit ε - Pyrococcus furiosus
- 1go3 – MjRNAP subunit RPB4, RPB7 - Methanocaldococcus jannaschii
- 1iw7, 1smy, 6asg - TtRNAP subunits α,β,β',ω Thermus thermophilus
- 8hsh - TtRNAP subunits α,β,β',ω - Cryo EM
- 1doq - TtRNAP subunit α
- 3lti– EcRNAP subunit β fragment – Escherichia coli
- 4iqz - EcRNAP subunit β’
- 3k4g, 1coo - EcRNAP subunit α
- 1bdf - EcRNAP subunit α mutant)
- 3lu0 - EcRNAP subunits α,β,β',ω – Electron diffraction
- 2krc - BsRNAP subunit δ N-terminal – Bacillus subtilis – NMR
- 2ly7 - BsRNAP subunit β NMR
- 2m4k - BsRNAP subunit δ NMR
- 4nc7, 4nc8 - BsRNAP subunit δ
- 2max - HpRNAP subunit α - Helicobacter pylori - NMR
- 1qyp – RNAP II C terminal – Thermococcus celer – NMR
- 4kbj – MtuRNAP β subunit – Mycobacterium tuberculosis
- 5uh7 - MtuRNAP subunit β’
- 7z8q - MtuRNAP subunits α,β,β’,ω – Cryo EM
- 4noi – RNAP α subunit – Campylobacter jejuni
- 1hqm – TaRNAP subunits α,β,β',ω Thermus aquaticus
- 2gho - TaRNAP subunits α,β,β'
- 2auj, 2auk - TaRNAP subunit β’
- 1xpp – RNAP subunit L – Thermoplasma acidophilum
- 2waq, 2wb1, 4ayb – SsRNAP
- 3e7h – VcRNAP subunit – Vibrio cholera
- 1ef4 – MtRNAP subunit RPB10 – Methanothermobacter thermautotrophicus
- 1eik - MtRNAP subunit RPB5 – NMR
- 4qiw – TkRNAP subunits a’’+d+e’+f+h+k+l+n+p – Thermococcus kodakarensis
- 6kf3 – TkRNAP subunits a’’+d+e’+f+h+k+l+n+p – Cryo EM
- 4qjf - TkRNAP subunits e’+f
- 4qjv - TkRNAP subunits d+l
- 6eyd, 6f6w – MsRNAP subunits α,β,β',ω - Mycobacterium smegmatis – Cryo EM
- 6vr4 – RNAP – Cellulophaga phage φ
- 7ccg - RNAP subunit δ - Streptomyces albulus
- 7ok0, 7oqy – SaRNAP – Sulfolobus acidocaldarius – Cryo EM
- 8h02 – SeRNAP subunit ’ – Synechococcus elongatus
- 8emb – RNAP subunit ’ si3 domain – Thermosynechococcus vestitus
- 8dkc – RNAP subunits ’ Porphyromonas gingivalis – Cryo EM
- 2y0s – SsRNAP – Sulfolobus shibata
- Prokaryotic DNA-dependent RNAP complex with DNA/RNA or elongation complex
- 4v8s – SsRNAP + DNA
- 3q22, 3q23, 3q24, 4ff1, 4ff2, 4ff3, 4ff4 – RNAP + DNA – Enterobacteria phage N4
- 2o5i, 2o5j, 4gzy, 4gzz, 4xln, 4xlr – TtRNAP subunits ’ + DNA +RNA
- 6m6c, 8hsg, 8hsr - TtRNAP in elongation complex – Cryo EM
- 5x22 - TtRNAP subunits ’ + DNA + RNA + CMPCPP
- 5x21 - TtRNAP subunits ’ + DNA + RNA + antibiotic
- 4wqs, 4xlp, 4xlq, 4xls, 5tjg - TtRNAP subunits ’ + DNA
- 2ppb - TtRNAP subunits ’ + antibiotic + DNA + RNA + substrate analog
- 4yg2, 4jk1, 4jk2, 4jkr, 4kmu - EcRNAP subunits ’ RNA
- 8aby, 8ac0, 8acp, 8ad1 - EcRNAP in elongation complex + RNA putL – Cryo EM
- 6flp, 6bjs, 6asx, 6alh, 6alf, 6rip, 6ri9, 7q0j, 7q0k, 7tyb, 7xue, 7xug, 7yp9, 8abz, 8ac1, 8ac2, 8eg7, 8eg8, 8egb, 8eh8 , 8eh9, 8eha, 8ehf, 8ehi, 8f1i, 8f1k, 8f3c, 8fix, 8fiy, 8fvr, 8fvw, 8g00, 8g1s, 8g2w, 8g7e, 8pbl - EcRNAP in elongation complex – Cryo EM
- 7ypa - EcRNAP in transcription-termination complex – Cryo EM
- 6rh3 - EcRNAP subunits ’ RNA + DNA + GMP + CTP – Cryo EM
- 4kn4, 4kn7 - EcRNAP subunits ’ RNA + antibiotic
- 6vvv – MsRNAP in translation initiation complex
- 7p5x – MsRNAP in translation initiation complex + PafBC – Cryo EM
- 6vvx, 6vvy, 6vvs, 6vvt, 6vvz – MsRNAP subunits ’ DNA + antibiotic
- 7l7b – RNAP subunits ’ sigma factor SIGA + antibiotic – Clostridia difficalis – Cryo EM
- 8gzg, 8gzh – RNAP elongation complex sigma factor SIGA – Synechocystic – Cryo EM
- 4v8s – SsRNAP + DNA
- Prokaryotic DNA-dependent RNAP complex with protein
- 3p8b – PfRNAP subunit ε’’ + NusG
- 3qqc - PfRNAP subunits β, ε’’ + NusG
- 2be5- TtRNAP subunits α,β,β’,ω + σ factor + inhibitor
- 2cw0, 5tmf - TtRNAP subunits α,β,β’,ω + σ factor
- 3wod - TtRNAP subunits α,β,β’,ω + σ factor + GP39
- 4mq9 - TtRNAP subunits α,β,β’,ω + σ factor + GE23077
- 5tmc - TtRNAP subunits α,β,β’,ω + σ factor + protein
- 3dxj, 3eql - TtRNAP subunits α,β,β’,ω + σ factor + antibiotic
- 5xj0 - TtRNAP subunits α,β,β’,ω + σ factor + GP39 + GP76
- 4wqt - TtRNAP subunits α,β,β’,ω + RNA cleavage stimulating factor
- 8hsl - TtRNAP subunits α,β,β’,ω + transcription termination factor rho – Cryo EM
- 3mlq - TtRNAP subunit β + transcription-repair coupling factor
- 3woe, 3wof - TtRNAP subunit β + GP39
- 2lmc - EcRNAP subunit β + RNAP inhibitor
- 3mmp - EcRNAP subunit β + EF-TU
- 7egs - EcRNAP subunit β + DNA helicase II 654-720
- 4ljz, 4lk1, 4mey, 4xsx, 4xsy, 4xsz, 4zh2, 4zh3 , 4zh4, 5byh, 5nwt, 5uag, 5uah, 5uaj, 5ual, 5uaq, 5ui8 - EcRNAP subunits α,β,β’,ω + σ factor
- 6c9y - EcRNAP subunits α,β,β’,ω + σ factor – Cryo EM
- 4mex - EcRNAP subunits α,β,β’,ω + σ factor + salinamide
- 4lk0, 4llg, 4mex, 4yfk, 4yfn, 4yfx - EcRNAP subunits α,β,β’,ω + σ factor + RNAP inhibitor
- 5uac, 6cux - EcRNAP subunits α,β,β’,ω + σ factor + antibiotic
- 6byu - EcRNAP subunits α,β,β’,ω + σ factor + PPAPP
- 5w1s - EcRNAP subunits α,β,β’,ω + σ factor + TRAR
- 6p1k - EcRNAP subunits α,β,β’,ω + RPOD – Cryo EM
- 7xui – EcRNAP in elongation complex + RPOD – Cryo EM
- 6vjs - EcRNAP subunits α,β,β’,ω + RPOD + inhibitor
- 6r9b, 6r9g - EcRNAP subunits α,β,β’,ω + OCR – Cryo EM
- 6n57, 6n58 - EcRNAP subunits α,β,β’,ω + RPOD + TRAR – Cryo EM
- 7w5y - EcRNAP subunits α,β,β’,ω + RPOD + SoxS – Cryo EM
- 7w5w - EcRNAP subunits α,β,β’,ω + RPOD + SoxS + micF DNA – Cryo EM
- 7w5x - EcRNAP subunits α,β,β’,ω + RPOD + SoxS + zwf DNA – Cryo EM
- 5tbz - EcRNAP subunits α,β,β’ + NusG – Cryo EM
- 6xln, 7mko - EcRNAP in elongation complex – Cryo EM
- 7mkp - EcRNAP core – Cryo EM
- 7m8e, 7mkn, 7mkq - EcRNAP subunits α,β,β’,ω + RapA – Cryo EM
- 6fbv - MtuRNAP subunits α,β,β’,ω + σ factor – single particle EM
- 7u22 - MtuRNAP subunits α,β,β’,ω + σ factor SIGA
- 7pp4, 7q4u, 7q59, 7zf2 - MtuRNAP subunits α,β,β’,ω + σ factor SIGB – Cryo EM
- 5zx3 - MtuRNAP subunits α,β,β’,ω + σ factor SIGH
- 3ihq, 1z3e, 3gfk - BsRNAP subunit α + regulatory protein SPX
- 1l9u - TaRNAP subunits α,β,β’,ω + σ factor
- 2jzb – RNAP subunit α + NusA – Yersinia pseudotuberculosis
- 3tbi - RNAP subunit β + GP33 – Enterobacteria phage T4
- 3lpe - MjRNAP subunit ε’’ + NusG
- 6eyd - MsRNAP subunits α,β,β’,ω + σ factor – Cryo EM
- 6yxu, 6yys, 6z11 - MsRNAP subunits α,β,β’,ω + HelD – Cryo EM
- 6kf4 – TkRNAP subunits a’+d+e’+f+h+k+l+n+p + transcription factor E – Cryo EM
- 6wvk, 6zca, 6zfb - BsRNAP subunits α,β,β’,d + HelD – Cryo EM
- 7oq4 - SaRNAP + viral RNAP inhibitory protein – Cryo EM
- 3p8b – PfRNAP subunit ε’’ + NusG
- Prokaryotic DNA-dependent RNAP complex with σ factor + DNA/RNA
- 6lts - TtRNAP subunits α,β,β’,ω + σ factor SIGA + DNA
- 7qxi - TtRNAP subunits α,β,β’,ω + σ factor-54 + DNA – Cryo EM
- 7mlb, 7mli, 7mlj, 7rdq - TtRNAP in elongation complex + σ factor SIGA – Cryo EM
- 4oin, 4oio - TtRNAP subunits α,β,β’,ω + σ factor + GE23077 + DNA
- 4oip - TtRNAP subunits α,β,β’,ω + σ factor + GE23077 + DNA + nucleotide
- 4oiq, 4oir - TtRNAP subunits α,β,β’,ω + σ factor + GE23077 + DNA + antibiotic
- 4g7h, 4g7o, 4g7z, 4q4z, 5d4d, 5d4e, 5voi, 6p70 - TtRNAP subunits α,β,β’,ω + σ factor + DNA
- 4q5s, 5d4c, 5e17, 5e18, 5vo8, 6p71, 6oy7, 6oy6, 6oy5, 6ow3, 6ovy, 6ovr, 6kqd, 6kqe, 6kqf, 6kqg, 6kqh, 6kql, 6kqm, 6kqn, 6l74 - TtRNAP in elongation complex
- 5i2d - TtRNAP subunits α,β,β’,ω + σ factor + transcriptional regulator + DNA + RNA
- 6cuu - TtRNAP subunits α,β,β’,ω + σ factor + DNA + antibiotic
- 6n62 - EcRNAP subunits α,β,β’,ω + σ factor + DNA
- 6n61 - EcRNAP subunits α,β,β’,ω + σ factor + DNA + capistruin peptide
- 6n60 - EcRNAP subunits α,β,β’,ω + σ factor + DNA + microcin peptide
- 5nsr, 5nss, 6gh6, 6gh5, 6ca0, 6omf, 7mkd, 7mke, 7mki, 7mkj - EcRNAP subunits α,β,β’,ω + σ factor + DNA – Cryo EM
- 5vt0 - EcRNAP subunits α,β,β’,ω + σ factor + RNA – Cryo EM
- 4yln, 4ylo, 4ylp, 5ipl, 5ipm, 5ipn, 6gfw - EcRNAP subunits α,β,β’,ω + σ factor + DNA + RNA
- 6b6h - EcRNAP subunits α,β,β’,ω + σ factor + CAP + DNA + RNA – Cryo EM
- 8hkc - EcRNAP subunits α,β,β’ + σ factor RPOH + DNA – Cryo EM
- 6k4y - EcRNAP subunits α,β,β’,ω + σ factor + MTOH + DNA – Cryo EM
- 7qwp, 8f1j - EcRNAP subunits α,β,β’,ω + σ factor-54 + DNA – Cryo EM
- 7q9v - EcRNAP subunits α,β,β’,ω + σ factor-54 + PspF + DNA – Cryo EM
- 3iyd - EcRNAP subunits α,β,β’,ω + σ factor + catabolite gene activator + DNA
- 4s20 - EcRNAP subunits α,β,β’,ω + σ factor + RAPA + DNA
- 5ms0 - EcRNAP subunits α,β,β’,ω + σ factor + NusB + NusG + NusA + RS10 + DNA – Cryo EM
- 5uha, 6vw0, 7rwi - MtuRNAP subunits α,β,β’,ω + σ factor + DNA
- 5uh9, 5uh8, 6jcy, 6jcx, 6jbq, 6kon, 6koo, 6kop, 6koq, 6tye, 6tyf, 6tyg - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RNA
- 8e8m, 8e95 - MtuRNAP in elongation complex
- 8hih - MtuRNAP in elongation complex + GlnR – Cryo EM
- 5uhg, 5uhc, 5uh6, 5uh5 - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RNA + antibiotic
- 5uhd, 5uhb - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + antibiotic
- 5uhf, 5uhe - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RNA + inhibitor
- 1l9z - TaRNAP subunits α,β,β’,ω + σ factor + DNA
- 8i23, 8i24 - RNAP subunits α,β,β’,ω + σ factor SIGI1 + DNA – Clostridium thermocellum - Cryo EM
- 6lts - TtRNAP subunits α,β,β’,ω + σ factor SIGA + DNA
- Prokaryotic DNA-dependent RNAP complex with protein + DNA/RNA
- 3aoh, 3aoi - TtRNAP subunits α,β,β’,ω + DNA + RNA + GFH1
- 6wox, 6woy, 7eh0, 7eh1, 7eh2 - TtRNAP subunits α,β,β’,ω in transcription complex
- 6m6a, 6m6b - TtRNAP subunits α,β,β’,ω + transcription-repair-coupling factor + DNA – Cryo EM
- 3t72 - EcRNAP subunit β + Pho box DNA + PhoB
- 1lb2, 3n4m - EcRNAP subunit α + DNA + CAP
- 1xs9 - EcRNAP subunit α + DNA + MARA
- 5ciz - EcRNAP subunit α + DNA + CRP
- 3n97 - EcRNAP subunit α C terminal + DNA + σ factor
- 6z9p, 6z9q, 6z9r, 6z9s, 6z9t, 7add, 7ade - EcRNAP in termination transcription complex
- 6vyu - EcRNAP in transcription initiation complex + mRNA
- 6c6u - EcRNAP subunits α,β,β’,ω + NusG
- 3aoh, 3aoi - TtRNAP subunits α,β,β’,ω + DNA + RNA + GFH1
+ DNA – Cryo EM
- 6vu3, 6vz3 - EcRNAP transcription translation complex + mRNA – Cryo EM
- 6vzj - EcRNAP transcription translation complex + mRNA + tRNA – Cryo EM
- 6vyz - EcRNAP transcription translation complex + NusA + mRNA + tRNA – Cryo EM
- 6vyq, 6vyr, 6vys, 6vyt, 6vyw, 6vyx, 6vyy, 6vz2, 6vz5, 6vz7, 6xdr, 6xgf, 6xij, 6xii - EcRNAP transcription translation complex + NusG + mRNA + tRNA – Cryo EM
- 6x6t, 6x7f, 6x7k, 6x9q, 6xdq - EcRNAP transcription translation complex + NusA + NusG + mRNA + tRNA – Cryo EM
- 6c6t, 6c6s - EcRNAP subunits α,β,β’,ω + RFAH + DNA – Cryo EM
- 6gov - EcRNAP subunits α,β,β’,ω + NusB + NusG + RS10 + DNA – Cryo EM
- 6flq - EcRNAP subunits α,β,β’,ω + NusA + DNA + RNA – Cryo EM
- 6xas - EcRNAP subunits α,β,β’,ω + NusA + helicase rho + DNA + RNA – Cryo EM
- 6xav, 7adb, 7adc - EcRNAP subunits α,β,β’,ω + NusG + helicase rho + DNA + RNA – Cryo EM
- 6alg - EcRNAP subunits α,β,β’,ω + NUN + DNA + RNA – Cryo EM
- 6p19 - EcRNAP subunits α,β,β’,ω + protein Q + DNA + RNA – Cryo EM
- 6jnx - EcRNAP subunits α,β,β’,ω + protein Q + σ factor + DNA – Cryo EM
- 6p18 - EcRNAP subunits α,β,β’,ω + protein Q + σ factor + DNA + RNA – Cryo EM
- 6kj6 - EcRNAP subunits α,β,β’,ω + RPOS + σ factor-binding protein CRL + DNA + RNA – Cryo EM
- 7chw, 8igs - EcRNAP subunits α,β,β’,ω + σ factor-binding protein PROD + DNA – Cryo EM
- 6x26, 6x2f, 6x2n, 6x43, 6x4w, 6x4y, 6x50 - EcRNAP in elongation complex + TRCF – Cryo EM
- 8e3f, 8e6x, 8e6z - EcRNAP in elongation complex + NusG - Cryo EM
- 8g4w, 8g8z - EcRNAP in elongation complex + preQ1 – Cryo EM
- 7uwe - EcRNAP in elongation complex + RNase HII – Cryo EM
- 8igr - EcRNAP in transcription activation complex + phage regulatory protein CII - Cryo EM
- 7vwz - EcRNAP in transcription activation complex + NusA + antitermination protein - Cryo EM
- 7ubm, 7ubn - EcRNAP in transcription antitermination complex + right origin binding protein - Cryo EM
- 7khb, 7khc, 7khe, 7khi - EcRNAP subunits α,β,β’,ω + σ factor RPOD + DNAK suppressor protein + DNA – Cryo EM
- 7bef, 7beg - EcRNAP subunits α,β,β’,ω + σ factor RPOD + RAMA + DNA – Cryo EM
- 6xh7, 7c17 - EcRNAP subunits α,β,β’,ω + σ factor RPOD + CueR + DNA – Cryo EM
- 6xh8 - EcRNAP subunits α,β,β’,ω + σ factor RPOD + CueR + DNA + RNA – Cryo EM
- 6xl5, 6xl9, 6xlj, 6xll, 6xlm - EcRNAP subunits α,β,β’,ω + σ factor RPOD + DNA + RNA – Cryo EM
- 6wmu, 7c97, 7dy6 - EcRNAP subunits α,β,β’,ω + σ factor RPOD + starvation protein + DNA - Cryo EM
- 7d7c - EcRNAP subunits α,β,β’,ω + GP55 + DNA - Cryo EM
- 7d7d - EcRNAP subunits α,β,β’,ω + DNAP clamp + GP55 + DNA - Cryo EM
- 6n4c, 6oul, 6wr6, 6wr8, 7n4e - EcRNAP subunits α,β,β’,ω + RPOD + DNA – Cryo EM
- 7szj, 7szk - EcRNAP subunits α,β,β’,ω + RPOD + DNA + drug – Cryo EM
- 6ldi - EcRNAP subunits α,β,β’,ω + RPOD + CUER + DNA + RNA – Cryo EM
- 6pb4, 6pb5, 6pb6 - EcRNAP subunits α,β,β’,ω + RPOD + CRP + DNA + RNA – Cryo EM
- 6psq, 6psr, 6pss, 6pst, 6psu, 6psv, 6psw - EcRNAP subunits α,β,β’,ω + RPOD + TRAR + DNA + RNA – Cryo EM
- 6pmi, 6pmj - EcRNAP subunits α,β,β’,ω + FLIA + DNA + RNA – Cryo EM
- 6rin, 6ri7 - EcRNAP subunits α,β,β’,ω + GREB + RNA + DNA – Cryo EM
- 6tqn, 6tqo - EcRNAP subunits α,β,β’,ω in anti-termination complex – Cryo EM
- 7c17 - EcRNAP subunits α,β,β’,ω in transcription complex – Cryo EM
- 7py3, 7pyj, 7pyk - EcRNAP in elongation complex + NusA - Cryo EM
- 7py0, 7py1, 7py8 - EcRNAP in elongation complex + NusG - Cryo EM
- 7py5, 7py6, 7py7 - EcRNAP in elongation complex + NusG + NusA - Cryo EM
- 8e5k, 8e5o - EcRNAP in transcription pre-termination complex + NusG - Cryo EM
- 7c97, 7chw - EcRNAP subunits α,β,β’,ω in promoter-open complex – Cryo EM
- 6j9f - XoRNAP subunits α,β,β’,ω + P7 + DNA + RNA – Xanthomonas oryzae - Cryo EM
- 6j9e - XoRNAP subunits α,β,β’,ω + P7 + DNA + RNA + NusA - Cryo EM
- 6kf9 – TkRNAP subunits a’’+d+e’+f+h+k+l+n+p + transcription factor E + DNA – Cryo EM
- 6dve, 6dvd, 6dvc, 6dvb, 6dv9 - MtuRNAP subunits α,β,β’,ω + σ factor + DNA
- 5zx2 - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RNA
- 7kin - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RBPA – Cryo EM
- 7kif, 7kim - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RBPA + CARD + Whib7 – Cryo EM
- 6wmp - FtRNAP subunits α,β,β’,ω + RNA + DNA – Francisella tularensis - Cryo EM
- 6wmr, 6wmt - FtRNAP subunits α,β,β’,ω + σ factor-binding protein PROD + starvation protein + macrophage growth locus + DNA - Cryo EM
- 6wvj - BsRNAP in elongation complex - Cryo EM
- 7ckq - BsRNAP subunits α,β,β’,ω + σ factor-binding protein SIGA + multidrug regulator + YkzG + DNA - Cryo EM
- 7f75 - BsRNAP subunits α,β,β’,ω + σ factor-binding protein SIGA + regulator Spx + RNA + DNA - Cryo EM
- 7ye2 - CavRNAP in transcription activation complex – Caulobacter vibrioides - Cryo EM
- 7ye1 - CavRNAP in transcription activation complex + GCRA - Cryo EM
- 7xya, 7xyb – PaRNAP subunits α,β,β’,ω + AlpA peptide + RNA + DNA – Pseudomonas aeruginosa
- 7xyb – PaRNAP subunits α,β,β’,ω + sigma factor RPOS – Cryo EM
- 7f0r, 7xl3, 7xl4 – PaRNAP subunits α,β,β’,ω + sigma factor RPOS + SutA – Cryo EM
- 8e79 - BsRNAP in elongation complex + NusG - Cryo EM
- 8e74, 8e82, 8ehq, 8ej3, 8eoe, 8eof, 8eos, 8eot, 8exy - MtuRNAP in elongation complex + NusG - Cryo EM
- 8h3v - RNAP in transcription activation complex + NusG + NTCA + NTCB + VF1- Cryo EM
- 8dy7, 8dy9 - RNAP subunits α,β,β’,ω + σ factor + DNA + RBPA + WHIA + WHIB – Streptococcus venezuelae - Cryo EM
- 8syi - SeRNAP in elongation complex + NusG - Cryo EM
- 7vpd, 7vpz, 7x74, 7x75, 7x76 - RNAP in elongation complex + ZUR – Streptococcus coelicolor - Cryo EM
- 6vu3, 6vz3 - EcRNAP transcription translation complex + mRNA – Cryo EM
- Prokaryotic DNA-dependent RNAP complex with small molecule
- Viral DNA-dependent RNAP
- Eukaryotic DNA-dependent RNAP I
- 8a43 – hRNAP I – human - Cryo EM
- 7oba – hRNAP I + TIF-IA - Cryo EM
- 7obb – hRNAP I + DNA – Cryo EM
- 7ob9, 7vba, 7vbb, 7vbc – hRNAP I in elongation complex – Cryo EM
- 1a1d – yRNAP subunit RPB8 – yeast - NMR
- 2rf4 - yRNAP I subunit RPA4
- 5g5l, 5lmx, 5m3f, 5m3m, 5m5w, 5m5x, 5m5y, 5m64 – yRNAP I – Cryo EM
- 5n5y, 5n5z, 5n60, 5oa1 – yRNAP I + RRN – Cryo EM
- 5n61, 6h68, 6h67 – yRNAP I + RRN + DNA + RNA – Cryo EM
- 5w66, 5w65, 5w64, 5w5y – yRNAP I + transcription initiation factor + DNA + RNA – Cryo EM
- 6tps – yRNAP I in pre-initiation complex – Cryo EM
- 7aoc, 7aod, 7aoe – fyRNAP I – fission yeast – Cryo EM
- 8a43 – hRNAP I – human - Cryo EM
- Eukaryotic DNA-dependent RNAP II
- 1qkl - hRNAP II subunit RPB6
- 7dth - hRNAP II subunit RPB6 - NMR
- 2c35 - hRNAP II subunits RPB4 RPB7 (mutant) – NMR
- 2f3i - hRNAP II subunits RPB8 RPB17 RPABC3 – NMR
- 2ghq, 2ght - hRNAP II subunits RPB1 + hRNAP II C terminal
- 2q5e, 3l0b, 3l0c - hRNAP II C terminal
- 7ozn, 8b3d, 8b3f – pRNAP II – Cryo EM
- 7w82 – cRNAP II - maize
- 7w88 – cRNAP II – Cryo EM
- 7rqs - AtRNAP II – Arabidopsis thaliana - Cryo EM
- 8h40 – RNAP II + NtcA – anabaena – Cryo EM
- 1nik, 1nt9, 1wcm, 2b8k, 3fki, 3qt1, 1i3q, 1i50, 1dzf, 5ip7, 5ip9, 5u5q – yRNAP II
- 3j1n, 4v1n, 5fmf, 5x51, 5x50, 5x4z, 7ozo, 7ozp – yRNAP II – Cryo EM
- 7ked, 7kee, 7kef – yRNAP II
- 1y14 - yRNAP II subunits RPB4 RPB7
- 3ef0, 3ef1 - fyRNAP II subunit α C terminal
- 3h0g – fyRNAP II
- 1qkl - hRNAP II subunit RPB6
- Eukaryotic DNA-dependent RNAP II complex with DNA/RNA
- 8p4e - hRNAP II + RNA + DNA – Cryo EM
- 4boc – hRNAP + DNA
- 5flm – bRNAP II in elongation complex - bovine
- 5oik – bRNAP II + SPT4 + SPT5 + DNA + RNA
- 1i6h, 4a3i - yRNAP II + DNA
- 4v1m, 7mka - yRNAP II + DNA – Cryo EM
- 1r9s, 2ja5, 2ja6, 2ja7, 2ja8, 2nvq, 2nvt, 2nvx, 2nvy, 2nvz, 3gtg, 3gtj, 3gtk, 3gtl, 3gtm, 3gto, 3gtp, 3gtq, 3hov, 3how, 3hox, 3hoy, 3hoz, 3po2, 3po3, 3m3y, 3m4o, 4a3g, 4a93, 4a3b, 4a3c, 4a3d, 4a3e, 4a3f, 4a3j, 4a3k, 4a3l, 4a3m, 4x67, 4x6a, 4y52, 4y7n, 5c3e, 5c44, 5c4a, 5c4j, 5c4x, 6bqf, 6bm4, 6bm2, 6blp, 6blo, 5w51, 5w4u - yRNAP II + RNA + DNA
- 5vvs - yRNAP II + RNA + DNA – Cryo EM
- 1y1w, 1y77, 2r7z, 2r92, 2r93, 3h3v, 3rzd, 3rzo, 3s15, 3s16, 3s17, 3s1m, 3s1n, 3s1q, 3s1r, 3s2d, 3s2h - yRNAP II + RNA
- 2b63 - yRNAP II + nucleotide + RNA
- 2e2i, 2e2j - yRNAP II + nucleotide + DNA
- 2yu9, 3i4m, 3i4n - yRNAP II + nucleotide + DNA + RNA
- 2vum - yRNAP II + inhibitor + DNA + RNA
- 8p4e - hRNAP II + RNA + DNA – Cryo EM
- Eukaryotic DNA-dependent RNAP II complex with protein
- 3o2q, 3o2s – hRNAP II subunit α C-terminal + symplekin
- 3j0k, 5iy6, 5iy7, 5iy8, 5iy9, 5iya, 5iyb, 5iyc, 5iyd – hRNAP II + TFIIF – Cryo EM
- 7dti – hRNAP II subunit RPB6 + TFIIH – NMR
- 6xre – hRNAP II + p53 – Cryo EM
- 2lto - hRNAP II subunit RPB1 + Tudor domain containing protein 3
- 8jal, 8jaq, 8jar, 8jas, 8jau, [8jav]] – hRNAP II in cullin-RING E3 ubiquitin ligase – Cryo EM
- 7xt7, 7xtd, 7xti – hRNAP II in elongation complex + nucleosome – Cryo EM
- 8bvw, 8byq – hRNAP II in pre-initiation complex + nucleosome – Cryo EM
- 8p4f – hRNAP II in co-transcriptional capping complex – Cryo EM
- 7nvu, 7nvt, 7nvu - pRNAP II + DNA + TFIIA + TFIIF + TATA-box-binding protein – pig - Cryo EM
- 7edx, 7eg7, 7eg8, 7eg9, 7ega, 7egb, 7egc - pRNAP II + DNA + TFIIA + TFIIB + TFIIE + TFIIF + TATA-box-binding protein - Cryo EM
- 7nw0 - pRNAP II + DNA + TFIIB + TFIIH + MAT1 + TATA-box-binding protein - Cryo EM
- 8a40 - pRNAP II in elongation complex + TFIIS - Cryo EM
- 7und – pRNAP II + nucleosome – Cryo EM
- 7okx, 7oky – pRNAP II + RNA + DNA + SPT5 + ELL2 – Cryo EM
- 7ol0 – pRNAP II + RNA + DNA + SPT5 – Cryo EM
- 7oo3 – pRNAP II + RNA + CSA + CSB + DDB1 + UVSSA – Cryo EM
- 7oop, 7opc, 7opd – pRNAP II + RNA + CSA + CSB + DDB1 + UVSSA – Cryo EM
- 7oob – pRNAP II + RNA + CSA + CSB + SPT6 + UVSSA + PAF – Cryo EM
- 6gml – pRNAP II + RNA + DNA + DSIF + NELF – Cryo EM
- 6gmh, 6ted – pRNAP II + RNA + DNA + DSIF + PAF + SPT6 – Cryo EM
- 6exv – pRNAP II + RNA + DNA + amatoxin – Cryo EM
- 8oew – pRNAP II + RNA + DNA + elongin A,B,C – Cryo EM
- 8oeu – pRNAP II + RNA + DNA + SPT6 – Cryo EM
- 8oev, 8of0 – pRNAP II + RNA + DNA + elongin A,B,C + SPT6 – Cryo EM
- 8p4b, 8p4c – pRNAP II in co-transcriptional capping complex – Cryo EM
- 7b7u, 7f4g – pRNAP II + hRPAP2 – Cryo EM
- 7nvs, 7nvy, 7nvz – pRNAP II in pre-initiation complex – Cryo EM
- 7nvr – pRNAP II in pre-initiation complex + hmediator – Cryo EM
- 7b0y – pRNAP II in transcription complex + U1 SNRNP – Cryo EM
- 1pqv, 1y1v, 4bbr, 4bbs - yRNAP II + TFIIS
- 1y1y - yRNAP II + TFIIS + DNA +RNA
- 1r5u, 3k7a, 3k1f - yRNAP II + TFIIB
- 7mk9 - yRNAP II + DNA + TIIF – Cryo EM
- 4v1o, 5fyw, 5fz5, 5sva - yRNAP II + DNA + TIIF + TBP + mediator – Cryo EM
- 2l0i – yRNAP C-terminal + RTT103 – NMR
- 4bxx, 4bxz, 4by1, 4by7 – yRNAP II + RNA + DNA + transcription factor Bye1
- 5vvr - yRNAP II + DNA + RNA + Rad26 – Cryo EM
- 6upx, 6upy, 6upz, 6uq0, 6uq1, 6uq2, 6uq3, 7rim, 7rip, 7riq 7riw, 7rix, 7riy - yRNAP II in elongation complex
- 6a5v, 6a5u, 6a5t, 6a5r, 6a5p, 6a5o, 6a5l, 7nkx, 7nky – yRNAP II + DNA + RNA + nucleosome – Cryo EM
- 7ml0, 7ml1, 7ml2, 7ml4, 7o4i, 7o4j, 7o4k, 7o4l, 7o72, 7o73, 7o75 - yRNAP II + DNA + TFIIH + TBP – Cryo EM
- 7kpv – yRNAP II cyclin-like subunit in Cdk8 kinase module – Cryo EM
- 8cen – yRNAP II in pre-initiation complex + mediator – Cryo EM
- 7zs9, 7zsa, 7zsb – yRNAP II in pre-initiation complex + nucleosome – Cryo EM
- 8ceo – yRNAP II in pre-initiation complex + nucleosome + mediator – Cryo EM
- 8h0v, 8h0w – KpRNAP II in chromatosome – Komagataella phaffii - Cryo EM
- 7xse, 7xsx, 7xsz – KpRNAP II in elongation complex + nucleosome - Cryo EM
- 8he5 – KpRNAP II in elongation complex + nucleosome + Rad26 + Elf1- Cryo EM
- 7wbv, 7wbw, 7wbx – KpRNAP II in elongation complex + Elf1 + Spt4/5 - Cryo EM
- 7xn7 – KpRNAP II in elongation complex + Elf1 + Spt4/5 + Spt6 + Spn1 + Paf1C - Cryo EM
- 3o2q, 3o2s – hRNAP II subunit α C-terminal + symplekin
- Eukaryotic DNA-dependent RNAP II complex with small molecule
- Eukaryotic DNA-dependent RNAP III
- 7a6h, 7ae1, 7ae3, 7aea, 7ast, 7d58, 7d59, 7dn3, 7du2, 7fji, 7fjj - hRNAP III – Cryo EM
- 8ity, 8iuh - hRNAP III in pre-initiation complex – Cryo EM
- 2xub, 2xv4 - hRNAP III subunit Rpc3
- 5afq - hRNAP III subunits Rpc3 + Rpc32B
- 7asu, 7asv - hRNAP III subunit Rpc5
- 2dk5 – hRNAP III winged helix domain (mutant) – NMR
- 2yu3 - hRNAP III winged helix domain
- 2dk8 – RNAP III RPC34 domain - mouse – NMR
- 2ckz, 5fj9, 5fja, 6eu3, 6eu2 - yRNAP III - Cryo EM
- 5fj8, 6f41, 7z1m, 7z1n, 7z1o, 8bws - yRNAP III in elongation complex - Cryo EM
- 6f44, 6f42, 6f40, 6eu1 - yRNAP III + DNA – Cryo EM
- 6cnf, 6cnd, 6cnc, 6cnb - yRNAP III + DNA + TFIIIB – Cryo EM
- 5xon - yRNAP III + DNA + RNA + TFIIB + SPT4 + SPT5 – Cryo EM
- 5xog - yRNAP III + DNA + RNA + SPT5 + KOW5 + ELF1 – Cryo EM
- 6eu0 - yRNAP III + DNA + TFIIIB + TATA-box-binding protein – Cryo EM
- 6tut - yRNAP III complex + MAF1 – Cryo EM
- 7z0h, 7z2z, 7z30, 7z31 - yRNAP III complex + Ty1 integrase – Cryo EM
- 7z1l - yRNAP III pre-termination complex – Cryo EM
- 3ayh - fyRNAP III subunit Rpc8+Rpc9
- 7a6h, 7ae1, 7ae3, 7aea, 7ast, 7d58, 7d59, 7dn3, 7du2, 7fji, 7fjj - hRNAP III – Cryo EM
- Eukaryotic DNA-dependent RNAP I+II+III
- 6o9l, 6drd - hRNAP – Cryo EM
- 6rwe, 6ruo, 6rui, 6rrd, 6rqt, 6rql, 6rqh, 6o6c, 6hls - yRNAP – Cryo EM
- 6hlr, 6hlq, 6hko - yRNAP + nucleotide analog – Cryo EM
- 6j51, 6j50, 6j4z, 6j4y, 6j4x, 6j4w, 6ir9 - yRNAP + Elf1 + Spt4 + Spt5 + nucleosome – Cryo EM
- 6i84 - yRNAP + DNA + nucleosome – Cryo EM
- 6gyl, 6gym, 6gyk, 7mei - yRNAP + DNA + TBP + TFIIH – Cryo EM
- 6o9l, 6drd - hRNAP – Cryo EM
- Eukaryotic DNA-dependent RNAP IV
- Eukaryotic DNA-dependent RNAP V
- 8hyj - AtRNAP + KTF1 - Cryo EM
- 8hyj - AtRNAP + KTF1 - Cryo EM
- Eukaryotic DNA-dependent RNAP I+II+III+IV+V
- Eukaryotic DNA-dependent RNAP μ or DNA-directed DNA/RNA polymerase mu
- 4lzd – hRNAP μ
- 4lzg, 4m04, 4m0a, 5twp, 5twq, 5twr, 5tws. 5txx, 5txz, 5tyb, 5tyc, 5tyd, 5tye, 5tyf, 5tyg, 5tyu, 5tyv, 5tyw, 5tyx, 5tyy, 5tyz, 6p1w, 6p1v, 6p1u, 6p1t, 6p1s, 6p1r, 6p1q, 6p1p, 6p1o, 6p1n, 6p1m, 6akh, 6ak9, 6ak8 – hRNAP μ + DNA
- 5vzi, 5vzh, 5vzg, 5vzf, 5vze, 5vzd, 5vzc, 5vzb, 5vza, 5vz9, 5vz8, 5vz7, 6ipg, 6ipf, 6ipe, 6ipd – hRNAP μ (mutant) + DNA + nucleotide
- 5zlc – hRNAP μ + nucleotide
- 6ipn, 6ipm, 6ipl, 6ipk, 6ipj, 6ipi, 6iph, 6ak6, 6ak5, 6aeh, 6aec – hRNAP μ (mutant) + nucleotide
- 4lzd – hRNAP μ
- Eukaryotic DNA-dependent RNAP mitochondrial or MTRPOL
- 7pzp, 7pzr – hRNAP – Cryo EM
- 4boc – hRNAP + DNA
- 6erq, 6erp – hRNAP + DNA + MTTFA + dimethyladenosine transferase
- 3spa - hRNAP + polypeptide
- 7a8p - hRNAP + inhibitor
- 8att, 8atv, 8atw, 8c5s, 8c5u, 8q63 – yRNAP in transcription initiation complex + RNA – Cryo EM
- 8ap1 – yRNAP in transcription initiation complex + GTP – Cryo EM
- 7pzp, 7pzr – hRNAP – Cryo EM
- Eukaryotic DNA primase
- 4lik, 4mhq, 6rb4 - hDNAP small subunit
- 3q36 – hDNAP large subunit
- 5i7m – hDNAP large subunit (mutant)
- 3l9q – hDNAP large subunit P58C domain
- 5dqo – hDNAP large subunit P58C domain (mutant)
- 4rr2 - hDNAP small + large subunit
- 4bpu - hDNAP small (mutant) + large subunit
- 4ehs – HpDNAP C terminal
- 4lim, 4mm2 - yDNAP small subunit
- 3lgb, 6di6, 6dhw - yDNAP large subunit Fe-S domain
- 6du0, 6dtz, 6dtv, 6di2 - yDNAP large subunit Fe-S domain (mutant)
- 7tl2 - yDNAP large subunit C-terminal domain (mutant)
- 4lik, 4mhq, 6rb4 - hDNAP small subunit
- Eukaryotic DNA primase complex
- 4lil - hDNAP small subunit + UTP
- 6r4s - hDNAP small subunit + ATP
- 6r5e, 6r5d, 6r4u, 6r4t - hDNAP small subunit + nucleoside analog
- 5f0s, 5f0q – hDNAP large subunit C terminal + RNA
- 4bpw - hDNAP small (mutant) + large subunit + UTP
- 4bpx - hDNAP small (mutant) + DNA polymerase α catalytic subunit
- 5exr - hDNAP small + large subunits + DNA polymerase α catalytic subunit
- 8d96 - hDNAP large subunit + DNA polymerase α catalytic subunit + DNA - Cryo EM
- 8d0k 8d9d - hDNAP small + large subunits + CST + DNA polymerase α catalytic subunit + DNA – Cryo EM
- 7u5c, 8d0b - hDNAP small + large subunits + CST + DNA polymerase α catalytic+B subunits + DNA – Cryo EM
- 7opl - hDNAP small + large subunits + Nsp1 + DNA polymerase α catalytic+B subunits – Cryo EM
- 7tl3, 7tl4 – yDNAP large subunit C terminal (mutant)
- 8foc, 8fod, 8foe, 8foh, 8foj, 8fok - yDNAP small + large subunits + DNA polymerase α catalytic+B subunits – Cryo EM
- 8g99 - fDNAP large subunit + DNA polymerase α catalytic+B subunits – frog - Cryo EM
- 8ucv - fDNAP large subunit + DNA polymerase α catalytic subunit + DNA - Cryo EM
- 8g9f - fDNAP small+large subunits + DNA polymerase α catalytic subunit + DNA - Cryo EM
- 8g9o - fDNAP large subunit + DNA polymerase α catalytic+B subunits + DNA - Cryo EM
- 8g9l - fDNAP large subunit + DNA polymerase α catalytic+B subunits + DNA + RNA - Cryo EM
- 4lil - hDNAP small subunit + UTP
- Bacterial DNA primase
- 1d0q - GsDNAP zinc-binding domain - Geobacillus stearothermophilus
- 1z8s - GsdnaG dnaB binding domain - NMR
- 2haj - EcdnaG catalytic domain - NMR
- 1t3w – EcdnaG C-terminal
- 1eqn, 1dd9, 1dde – EcdnaG catalytic core
- 5w33 - MtudnaG RPD 112-432
- 5z51 - MtudnaG helicase-binding domain 482-637
- 5vaz – PadnaG
- 4im9 – VcdnaG C-terminal
- 3m1m – DNAP RNA polymerase domain – Sulfolobus islandicus
- 1zt2, 2pa8, 2pmz, 3hkz, 5ofn - SsDNAP small + large subunit – Sulfolobus solfataricus
- 2au3 – DNAP zinc-binding and RNAP domains – Aquifex aeolicus
- 1v33 - PhDNAP small subunit – Pyrocuccus horikoshii
- 1g71 - PfDNAP small subunit
- 4e2k – SaDNAP – Staphylococcus aureus
- 7ola, 7om0 – SaDNAP – Cryo EM
- 2lzn – SaDNAP C terminal – NMR
- 5guj – BsdnaG RNAP domain
- 6gt7 – SiDNAP PRN1 helix bundle domain – Sulfolobus islandicus - NMR
- 6gvu – SiDNAP PRN1 helix bundle domain + DNA - NMR
- 6gvq, 6gvt – SiDNAP PRN1 helix bundle domain + DNA + ATP - NMR
- 1d0q - GsDNAP zinc-binding domain - Geobacillus stearothermophilus
- Bacterial DNA primase complex
- 2r6a, 2r6c - GsdnaG helicase binding domain + helicase
- 4m4w - GsdnaG helicase binding domain + helicase + DnaI
- 3b39 – EcdnaG catalytic domain + DNA
- 7t22, 7t23 – EcdnaG C-terminal (mutant) + helicase + DNA – Cryo EM
- 5w36, 5w35, 5w34 - MtudnaG + DNA
- 1v34 - PhDNAP small subunit + UTP
- 4edg, 4edk, 4edr, 4edt, 4edv, 4ee1 – SaDNAP + nucleotide
- 5of3 - SsDNAP small + large subunit + protein
- 7uy8 - DNAP small + large subunits + DNA polymerase α catalytic+B subunits – Tetrahymena thermophile - Cryo EM
- 2r6a, 2r6c - GsdnaG helicase binding domain + helicase
- Phage DNA primase
- 6a9w, 6k9b - NrsDNAP N terminal 1-305 – Nitratiruptor phage Nrs
- 6k9c, 6k9e, 6lrb - NrsDNAP C terminal 305-718
- 6jon, 6jop, 6joq, 6k9a - NrsDNAP N terminal + nucleotide
- 8dwj – T4DNAP + RNA + DNA – Escherichia phage T4 – Cryo EM
- 8dvf, 8dvi, 8dw6 – T4DNAP + helicase + DNA – Cryo EM
- 8gao – T4DNAP + helicase + DNA + RNA – Cryo EM
- 6a9w, 6k9b - NrsDNAP N terminal 1-305 – Nitratiruptor phage Nrs
- RNA polymerase from Bacteriophage T7 or DNA primase/helicase or GP4
- 1q57 – T7DNAP/helicase (mutant) – Enterobacteria phage T7
- 1nui – T7DNAP/helicase primase fragment (mutant)
- 1cr0 - T7DNAP/helicase helicase domain
- 1cr1, 1cr2, 1cr4 - T7DNAP/helicase helicase domain + nucleotide
- 4rnp – T7RNAP
- 1aro – T7RNAP + T7 lysozyme
- 1cez, 1h38, 1qln, 2pi4, 2pi5 - T7RNAP + DNA
- 6n7v, 6n7t, 6n7s, 6n7n, 6n7i - T7RNAP (mutant) + DNA + TTP – Cryo EM
- 1msw, 1s0v, 1s76, 1s77, 3e2e, 3e3j, 8dh0, 8dh1, 8dh2, 8dh3, 8dh4, 8dh5 - T7RNAP in elongation complex
- 6n9x, 6n9w, 6n9v, 6n9u - T7RNAP (mutant) + GP5 + DNA + RNA – Cryo EM
- 5ikn - T7RNAP (mutant) + GP5 + thioredoxin
- 1q57 – T7DNAP/helicase (mutant) – Enterobacteria phage T7
- RNA-dependent RNAP or cap-snatching endonuclease
- 7roz – AtRNAP 2 – Cryo EM
- 3phu, 1khv, 1khw – HfRNAP L RNA-directed – Hemorrhagic fever virus
- 5v5i, 5v5h, 5v5g – HfRNAP L + ubiquitin
- 2xwh, 2xxd, 2xhu, 2xhw, 3i5k, 1c2p, 1csj, 1quv, 1yuy, 1yv2, 1yvx, 1yvz, 3gsz, 4aep, 4aex, 2wrm, 3mwv, 3mww – HvRNAP Ns5b domain – Hepatitis virus
- 3vc8 - HvRNAP cytoplasmic domain C terminal
- 3vcb, 4ry4, 4ry5, 4ry6, 4ry7 - HvRNAP cytoplasmic domain C terminal (mutant)
- 2xym, 2xhv, 2xi2, 4e76, 4adp, 4obc, 4wt9 - HvRNAP Ns5b domain (mutant)
- 1rdr - PoRNAP – Polio virus
- 1tql, 2ijd, 2ijf, 4nlo, 4nlp, 4nlq, 4nlr, 4nls, 4nlt, 4nlu, 4nlv, 4nlw, 4nlx, 4nly, 4r0e - PoRNAP (mutant)
- 2xi5, 2xi7 – BvRNAP L N-terminal – Bunyavirus
- 7x6s – LcvRNAP L– Lymphocytic choriomengitis virus - Cryo EM
- 3jsb – LcvRNAP L (mutant)
- 2wk4, 2uut, 2uuw – SvRNAP (mutant) – Sapporo virus
- 2ckw - SvRNAP residues 1135-1649
- 3nky, 4wyl, 4wyw, 6gvv - FmRNAP (mutant) - Foot-and-mouth virus
- 1hhs, 4a8o, 4b02, 1hi8, 5fj6 – P6RNAP – Bacteriophage φ-6
- 7ogp, 7ogr – RNAP – Bacteriophage φ-kz – Cryo EM
- 7s00, 7um1 – AR9RNAP – Bacteriophage AR9 – Cryo EM
- 7s01, 7um0 – AR9RNAP + DNA – Cryo EM
- 2jl9, 2jlf, 1wac – P6RNAP (mutant)
- 5fj7 – P6RNAP + major inner protein P1
- 2po4 – N4RNAP polymerase domain – Bacteriophage N4
- 1l9k – DevRNAP N terminal – Dengue virus
- 2j7u, 4c11 - DevRNAP polymerase domain
- 5ccv - DevRNAP NS5
- 1oks – RNAP α subunit – Measles virus
- 1r4g - RNAP α subunit – Sendai virus – NMR
- 1s48, 1s49, 1s4f – DvRNAP residues 71-679 – Diarrhea virus
- 2cjq - DvRNAP polymerase domain
- 1sh0, 1sh2, 1sh3 - NvRNAP C terminal – Norwalk virus
- 1vyi - RNAP α subunit C terminal – Rabies virus
- 2hcn, 2hcs, 2hfz – RNAP polymerase domain – West Nile virus
- 2pgg, 2pus – RNAP – Bursal disease virus
- 2r7o, 2r7q – SrRNAP – Simian rotavirus
- 4au6 - RNAP – bovine rotavirus – Cryo-EM
- 2yi8, 2yi9, 2yia, 2yib – IpnvRNAP – Infectious pancreatic necrosis virus
- 3n6l – EvRNAP – Human enterovirus
- 4uci, 4ucj, 4ucl, 4ucy, 4ucz – HmpvRNAP L residues 1600-2005 – Human metapneumovirus
- 4uck, 4ud0 – HmpvRNAP L residues 1600-2005 (mutant)
- 4zp8, 4zp9, 4zpa, 4zpb, 4zpc, 4zpd – CvRNAP residues 1724-2185 (mutant) – Coxsackievirus
- 3ddk – CvRNAP residues 1724-2185
- 3nah, 3nai, 3qid, 3uqs – MnvRNAP – Murine norovirus
- 4wfx, 4wfy, 4wfz – CvRNAP RdrP domain (mutant)
- 2j7n, 2j7o – NcRNAP residues 381-1402 – Neurospora crassa
- 4gzk, 4ieg – RNAP – cystovirus 12
- 4i1t – RNAP L – Pichinde virus
- 5chs – VsivRNAP L N-terminal – Vescicular stomatitis Indiana virus
- 4xha, 4xhi, 7om2, 7om9 – TavRNAP RdRP – Thosea asigna virus
- 6l42 – RNAP L – Phlebovirus – Cryo EM
- 6l4r – RNAP – Enterovirus
- 6ntv – SftvRNAP – Severe fever with thrombocytopenia virus – Cryo EM
- 6ntv – SftvRNAP endonuclease domain 1-226
- 6lkx – RNAP – Porcine respiratory virus
- 6kld, 7vh2, 7vh3 – MavRNAP L – Machupo virus – Cryo EM
- 6klc, 7och, 7oe3, 7oe7 – LvRNAP L – Lassa virus – Cryo EM
- 4miw, 5izh, 5j1n, 5j1p – LvRNAP L N terminal
- 4mtp, 7d6n – EnvRNAP RdrP module – Encephalitis virus
- 4cgx, 4chc – TvRNAP N terminal – Thogoto virus
- 4chd – TvRNAP 627 domain
- 4che, 4chf – TvRNAP cap-binding domain
- 5fsw - NvRNAP C terminal – Thielavia terrestris
- 5hsb – RNAP – Andes virus
- 5ize – HavRNAP L – Hantaan virus
- 8c4s – HavRNAP L – Cryo EM
- 5ltf – LcmvRNAP L – Lymphocytic choriomeningitis mammarenavirus
- 5lts - LcmvRNAP (mutant)
- 5u0c, 6ld1 - ZvRNAP NS5 polymerase domain 2781-3419 – Zika virus
- 6qw5, 6qw0, 6qvv - RNAP – Toscana virus
- 6dx5 - RNAP OTU domain – Farallon virus
- 6dx3 - RNAP OTU domain – Taggert virus
- 6dx2 - RNAP OTU domain – Dera Ghazi khan virus
- 6dx1, 6dwx - RNAP OTU domain – Qulybus virus
- 7eei – RNAP (mutant) – Rift valley fever virus – Cryo EM
- 7roz – AtRNAP 2 – Cryo EM
- RNA-dependent RNAP complex with RNA
- 4e78, 4e7a, 4wta, 4wtc, 4wtd, 4wte, 4wtf, 4wtg, 4wti, 4wtj, 4wtk, 4wtl, 4wtm - HvRNAP Ns5b domain (mutant) + RNA
- 3ol6, 2jlg, 4k4s, 4k4t, 4k4u, 4k4v, 4k4w – PoRNAP (mutant) + RNA
- 3ol7, 3ol8, 3ol9, 3ola, 3olb - PoRNAP (mutant) + RNA + nucleotide
- 1wne – FmRNAP + RNA
- 3klv, 3kmq, 3kms, 3kna, 3nl0, 3nma, 4iqx, 4wzm, 4wzq, 4x2b, 5jxs – FmRNAP (mutant) + RNA
- 3koa - FmRNAP (mutant) + RNA + nucleotide
- 2e9r, 2e9t, 2e9z, 2ec0 - FmRNAP + RNA + inhibitor
- 1uvi, 1uvl, 1uvm, 1uvn, 4a8f, 4a8k, 4a8m, 4a8q, 4a8s, 4a8w, [[4a8y – P6RNAP + RNA
- [[3bsn, 3bso, 3h5x, 3h5y - NvRNAP + RNA + nucleotide
- 2r7r, 2r7s, 2r7t, 2r7u, 2r7v, 2r7w, 2r7x – SrRNAP + RNA
- 5amq, 5amr – BvRNAP + RNA
- 7ork, 7orl, 7orj, 7orm – BvRNAP + RNA – Cryo EM
- 4k50 – RNAP + RNA – Human rhinovirus
- 3c2p, 3c3l, 3c46, 3q0a - N4RNAP polymerase domain + promoter DNA
- 1hht, 1hi0 – P6RNAP + DNA
- 1uvj, 1uvk – P6RNAP + RNA
- 4k4x, 4k4y, 4k4z – CvRNAP + RNA
- 6ogz – RvaRNAP + RNA – Rotavirus A – Cryo EM
- 6kwq – EvRNAP + RNA
- 6kwr – EvRNAP + RNA + CMP + CTP
- 6kle, 6klh – MvRNAP L + RNA – Cryo EM
- 6z6g, 6z8k – RNAP L + RNA – La crosse orthobunyavirus - Cryo EM
- 8ci5 – RNAP L + RNA – sin nombre orthohantavirus - Cryo EM
- 7y7q – NcRNAP + RNA + GTP
- 7y7p – NcRNAP + RNA + AMPNPP
- 7y7r – NcRNAP + RNA + DNA + GTP
- 7ela, 7oea, 7oeb, 7ojj, 7ojk, 7ojl, 7ojn – LvRNAP + RNA – Cryo EM
- 8c4t, 8c4u, 8c4v – HavRNAP L + RNA – Cryo EM
- 8as6, 8as7, 8asb, 8asd, 8asg – RNAP L + RNA – SFTS virus - Cryo EM
- 7om7, 7oma – TavRNAP RdrP domain + RNA
- 4e78, 4e7a, 4wta, 4wtc, 4wtd, 4wte, 4wtf, 4wtg, 4wti, 4wtj, 4wtk, 4wtl, 4wtm - HvRNAP Ns5b domain (mutant) + RNA
- RNA-dependent RNAP complex with protein
- 3phw, 2pt2, 3pt2 – HfRNAP + ubiquitin
- 3phx, 3pse – HfRNAP + ISG15
- 6u5o – HmpvRNAP L + phosphoprotein – Cryo EM
- 8fpj – HmpvRNAP L + MRK-1 – Cryo EM
- 6pzk, 6uen, 8fpi, 8fu3 – RNAP L + phosphoprotein – Human respiratory syncytial virus - Cryo EM
- 6v85, 6v86 – RNAP L + phosphoprotein – Parainfluenza virus
- 6po2, 6pns – RNAP + VP3 – Bluetongue virus - Cryo EM
- 2d7s, 2f8e, 8c1n – FmRNAP + VPG
- 8c2p – FmRNAP + protein 3B-3
- 5y3d – MnvRNAP + VPG
- 3cdw - CvRNAP + POP + VPG
- 4f5x – SrRNAP + Vp2 + Vp6
- 3zed – IpnvRNAP + capsid protein Vp3
- 6u1x – VsivRNAP + phosphoprotein
- 4hxd – RNAP L + polyubiquitin-C – Dugbe virus
- 4r71 – RNAP b chain + EF-TS EF-TU + RPS1 – Enterobacteria phage qbeta
- 5jze – RNAP + ISG15 – Erve virus
- 6tz0, 6ty8 – BmcpvRNAP + Vp4 – Bombyx mori cytoplasmic polyhedrosis virus – Cryo EM
- 6tz2, 6tz1, 6ty9, 5h0r – BmcpvRNAP + Vp4 – RNA – Cryo EM
- 6ogy – RvARNAP + Vp2 + RNA – Cryo EM
- 6k32 – RvARNAP + Vp1 + Vp4 + RNA – Cypovirus 1 - Cryo EM
- 6oar, 6oat – RNAP OUT domain + ISG17 – Kupe virus
- 7yer, 7yes, 8jsl, 8jsm, 8jsn – EbvRNAP + Vp35 – Ebola virus – Cryo EM
- 7yet – EbvRNAP + Vp35+ drug – Cryo EM
- 7ckl, 7ckm, 7elb, 7vgq, 7vh1 – MavRNAP L + matrix protein Z – Cryo EM
- 7el9, 7elc – MavRNAP L + matrix protein Z + RNA – Cryo EM
- 7x6v – LcvRNAP L + matrix protein Z – Cryo EM
- 7eju – RNAP L + matrix protein Z – Junin virus - Cryo EM
- 7yot, 7yov, 7you – RNAP + P protein – Newcastle disease virus – Cryo EM
- 3phw, 2pt2, 3pt2 – HfRNAP + ubiquitin
- RNA-dependent RNAP from SARS-COV2”
- 7btf, 7bw4 – SCRNAP + non-structural proteins – SARS-COV-2 - Cryo EM
- 6xqb, 7bzf, 7c2k, 7uo7, 7uo9, 7uob, 7uoe, 8gwb, 8gwe – SCRNAP + non-structural proteins + RNA - Cryo EM
- 7aap, 7b38, 7b3c, 7ctt, 7d4f, 7dfg, 7dfh, 7doi, 7dok, 7l1f, 7p35, 7uo4 – SCRNAP + non-structural proteins + RNA + drug - Cryo EM
- 7ed5, 8gwn, 8gwo – SCRNAP + non-structural proteins + RNA + inhibitor - Cryo EM
- 7krn, 7rdx, 7rdy, 7rdz, 7re0, 7re1, 7re2, 7re3 – SCRNAP + non-structural proteins + RNA + helicase - Cryo EM
- 7cxm, 7cxn, 7cyq – SCRNAP 4393-5324 (mutant)+ non-structural proteins + RNA + helicase - Cryo EM
- 7oyg – SCRNAP + non-structural proteins + RNA + PP1AB - Cryo EM
- 8gy6 – SCRNAP + non-structural proteins + RNA + toxin - Cryo EM
- 8gwf, 8gwg – SCRNAP + non-structural proteins + RNA + helicase + inhibitor - Cryo EM
- 7eiz – SCRNAP + non-structural proteins + RNA + methyltransferase + exoribonuclease - Cryo EM
- 7btf, 7bw4 – SCRNAP + non-structural proteins – SARS-COV-2 - Cryo EM
- RNA-dependent RNAP complex with small molecule
- 2xwy, 3mf5, 3hkw, 3hky, 3lkh, 3gnv, 3gnw, 3h98, 3g86, 3h59, 1nhu, 1nhv, 2brk, 2brl, 2gc8, 2giq, 2gir]], 2hai, 2hwh, 2hwi, 2i1r, 2ijn, 2jc0, 2jc1, 2qe2, 2qe5, 2wcx, 2who, 3ciz, 3cj0, 3cj2, 3cj3, 3cj4, 3cj5, 3cso, 3cvk, 3fqk, 3fql, 3gol, 3h5s, 3h5u, 3q0z, 3qgd, 3qge, 3qgf, 3qgg, 3qgh, 3qgi, 3ska, 3ske, 3skh, 3uph]], 3upi, 4dru, 3vqs, 3udl, 4eo6, 4eo8, 4eaw, 4gmc, 4ih5, 4ih6, 4ih7, 4iz0, 4jtz, 4jtw, 4jty, 4ju1, 4ju2, 4jjs, 4jju, 4j02, 4j04, 4j06, 4j08, 2yoj, 3tuq, 3tuv, 3u4o, 3u4r, 4mk7, 4mk8, 4mk9, 4mka, 4mkb, 4mz4, 4nld, 3tyq, 3tyv, 4mia, 4mib, 4oow, 4tlr, 5pzk, 5pzl, 5pzm, 5pzn, 5pzo, 5pzp, 5trh, 5tri, 5trj - HvRNAP Ns5b domain + inhibitor
- 3gyn, 1os5, 3br9, 3bsa, 3bsc, 3cde, 3co9, 3cwj, 3d28, 3d5m, 3e51, 3frz, 3igv, 3hvo, 3h2l, 4kai, 4kb7, 4kbi, 4ke5, 4khm, 4khr, 5twm, 5twn - HvRNAP Ns5b domain (mutant) + inhibitor
- 2xi3 - HvRNAP Ns5b domain (mutant) + GTP
- 1gx5, 1gx6 - HvRNAP Ns5b domain + nucleotide
- 2im1, 2im0, 2im2, 2im3, 2ily, 2ilz - PoRNAP (mutant) + nucleotide
- 3n6m, 3n6n – EvRNAP + nucleotide
- 3sfg – MnvRNAP + thio-uridine
- 3sfu – MnvRNAP + ribavirine
- 3upf, 3ur0, 4nru, 4o4r – MnvRNAP + inhibitor
- 4lq3, 4lq9 – RNAP + inhibitor – human norovirus
- 3cdu – CvRNAP + POP
- 3eva, 3evb, 3evc, 3evd, 3eve, 3evf, 3evg – RNAP N terminal + SAH – Yellow fever virus
- 1hi1 – P6RNAP + NTP
- 5cx6, 5cyr - TavRNAP + nucleotide
- 5hmw, 5f3t, 5hmx, 5hmy, 5hn0, 5hmz, 5iq6, 5k5m, 6xd0, 6xd1 - DevRNAP Ns5 + inhibitor
- 5ehg - DevRNAP NS5 + SAM + inhibitor
- 5goz, 5gp1 - ZvRNAP NS5 + SAH + GTP
- 6ld2, 6ld3, 6ld4, 6ld5 - ZvRNAP NS5 polymerase domain + inhibitor
- 5ltn, 5t2t - LcmvRNAP + inhibitor
- 6mvo – RNAP (mutant) + inhibitor – Hepacivirus C
- 6xya – SftvRNAP cap-binding domain 1695-1810 + GTP
- 8gwi – SCRNAP + inhibitor - Cryo EM
- 2xwy, 3mf5, 3hkw, 3hky, 3lkh, 3gnv, 3gnw, 3h98, 3g86, 3h59, 1nhu, 1nhv, 2brk, 2brl, 2gc8, 2giq, 2gir]], 2hai, 2hwh, 2hwi, 2i1r, 2ijn, 2jc0, 2jc1, 2qe2, 2qe5, 2wcx, 2who, 3ciz, 3cj0, 3cj2, 3cj3, 3cj4, 3cj5, 3cso, 3cvk, 3fqk, 3fql, 3gol, 3h5s, 3h5u, 3q0z, 3qgd, 3qge, 3qgf, 3qgg, 3qgh, 3qgi, 3ska, 3ske, 3skh, 3uph]], 3upi, 4dru, 3vqs, 3udl, 4eo6, 4eo8, 4eaw, 4gmc, 4ih5, 4ih6, 4ih7, 4iz0, 4jtz, 4jtw, 4jty, 4ju1, 4ju2, 4jjs, 4jju, 4j02, 4j04, 4j06, 4j08, 2yoj, 3tuq, 3tuv, 3u4o, 3u4r, 4mk7, 4mk8, 4mk9, 4mka, 4mkb, 4mz4, 4nld, 3tyq, 3tyv, 4mia, 4mib, 4oow, 4tlr, 5pzk, 5pzl, 5pzm, 5pzn, 5pzo, 5pzp, 5trh, 5tri, 5trj - HvRNAP Ns5b domain + inhibitor
- Influenza virus polymerase acidic protein (or PA or subunit P2) N terminal 1-256; C-terminal 257-716
- 2w69, 3ebj, 4p9a, 4nfz, 4avq, 4e5e, 4zqq, 5jht, 5jhv, [[5des], 7xgc] - IvRNAP PA N terminal – Influenza virus
- 5d2o, 5czn, 3hw6, 6fsb - IvRNAP PA N terminal (mutant)
- 3hw3, 3hw4, 3hw5 - IvRNAP PA residues N-terminal (mutant) + Mn + nucleotide
- 4w9s, 5fdd, 5fdg, 5i13, 5ieq, 5if2, 5if5, 5if7, 5if8, 5ifb, 5ifc, 5ifd, 5wa6, 5wa7, 5wb3, 5wap, 5w9g, 5w92, 5w44, 5v0u, 6nem, 6nel, 6e6x, 6e6w, 6e6v, 6dcz, 6dcy, 5ega, 5cl0, 5cgv, 5ccy, 4mk5, 4mk2, 4mk1, 4awm, 4awk, 4awh, 4awg, 4awf, 4e5f, 4e5g, 4e5h, 4e5i, 4e5j, 4e5l, 4yyl, 4zhz, 4zi0, 6fs7, 6fs6, 6fs8, 4avl, 4avg, 6yem, 7mty, 7mx0, 7n55, 7n68, 7v04, 8ctf – IvRNAP PA N terminal + inhibitor
- 5wg9, 5wfz, 5wfw, 5wfm, 5wf3, 5wei, 5wef, 5web, 5we9, 5we7, 5wdw, 5wdn, 5wdc, 5wct, 5wcs, 5w73, 5w7u, 5w3i, 5vrj, 5vqn, 5vpx, 5vpt, 5vp8, 6e4c, 6e3p, 6e3o, 6e3n, 6e3m, 6e0q, 6dzq, 5deb, 5dbs, 5d9j, 5d8u, 5d4g, 5d42, 6fs9, 7ml8, 7rkp – IvRNAP PA N terminal (mutant) + inhibitor
- 4iuj - IvRNAP PA C-terminal
- 7zpy – IvRNAP PA C terminal + inhibitor
- 2w69, 3ebj, 4p9a, 4nfz, 4avq, 4e5e, 4zqq, 5jht, 5jhv, [[5des], 7xgc] - IvRNAP PA N terminal – Influenza virus
- Influenza virus polymerase basic protein 2 (or RNAP subunit P3 or PB2)); Domains: cap-binding 318-483; Cap-binding and midlink 247-536; 627 538-693; NLS 694-753
- 4enf, 4u6o, 4j2r, 2vqz, 5ef9, 5eg9 – IvRNAP PB2 cap-binding domain
- 3wi0 – IvRNAP PB2 cap-binding domain (mutant)
- 7as2, 7as3 – IvRNAP PB2 cap-binding domain (mutant) + VX
- 7nft – IvRNAP PB2 cap-binding domain + nanobody
- 3cw4 - IvRNAP PB2 627 + NLS domains
- 2gmo - IvRNAP PB2 627 + NLS domains - NMR
- 4eqk, 5efa, 5efc – IvRNAP PB2 cap-binding domain + GTP
- 4nce, 3wi1 – IvRNAP PB2 cap-binding domain (mutant) + GTP derivative
- 4p1u, 4yd0, 5buh, 5jun, 5jur, 7as0, 7xme - IvRNAP PB2 cap-binding domain + inhibitor
- 4ncm, 7as1 – IvRNAP PB2 cap-binding domain (mutant) + inhibitor
- 6euy, 6eux, 6euv - IvRNAP PB2 cap-binding + midlink domains + inhibitor
- 5wl0 - IvRNAP PB2 cap-binding + midlink + 627 + NLS domains + inhibitor
- 4uad, 4uae, 4uaf - IvRNAP PB2 + importin
- 2vy6 - IvRNAP PB2 627 + NLS domains
- 2vy7 - IvRNAP PB2 627 domain
- 2vy8 - IvRNAP PB2 627 domain (mutant)
- 4enf, 4u6o, 4j2r, 2vqz, 5ef9, 5eg9 – IvRNAP PB2 cap-binding domain
- Influenza virus RNAP PA+PB1
- Influenza virus RNAP PA+PB2
- Influenza virus RNAP PB1+PB2
- Influenza virus RNAP PB1+P2+P3
- 7zpm - IvRNAP PB1+P2+P3 – Cryo EM
- 7nha, 7nhc, 7nhx, 7zpl, 8h69 - IvRNAP PB1+P2+P3 + RNA – Cryo EM
- 7ni0, 7nik, 7nil, 7nir, 7nis, 7nj3, 7nj4, 7nj5, 7nj7, 7nk1, 7nk2, 7nk4, 7nk6, 7nk8, 7nka, 7nkc, 7nki, 7nkr - IvRNAP PB1+P2+P3 + RNA + nanobody – Cryo EM
- 7qtl, 7r0e, 7r1f, 8bdr, 8be0, 8bek, 8bf5 - IvRNAP PB1+P2+P3 + RNA + mRNA – Cryo EM
- 7z42 - IvRNAP PB1+P2+P3 + RNA + RPB1 peptide – Cryo EM
- 7zpm - IvRNAP PB1+P2+P3 – Cryo EM
- Influenza virus RNAP PA+PB1+PB2 (subunits P1+p2+p3)
- 6qpf, 6qnw, 5d98, 5d9a - IvRNAP PB1 + IvRNAP PA + IvRNAP PB2
- 6kv5 - IvRNAP PB1 + IvRNAP PA + IvRNAP PB2 – Cryo EM
- 4wsb, 5fmz, 5m3h, 5m3j, 5msg, 6f5o, 6evj, 6qcx, 6qcw, 6fhi, 4wrt, 4wsa - IvRNAP PB1 + IvRNAP PA + IvRNAP PB2 + RNA
- 6rr7, 6qx8, 6qwl, 6qct, 6qcs, 6kuv, 6kuu, 6kut, 6kur, 6kup, 6kuk, 6kuj - IvRNAP PB1 + IvRNAP PA + IvRNAP PB2 + RNA – Cryo EM
- 6qpg - IvRNAP PB1 + IvRNAP PA + IvRNAP PB2 + RNA + nanobody
- 6qxe, 6qx3 - IvRNAP PB1 + IvRNAP PA + IvRNAP PB2 + RNA + nanobody – Cryo EM
- 6evk - IvRNAP PB1 + IvRNAP PA + IvRNAP PB2 + RNA + GTP
- 6qcv - IvRNAP PB1 + IvRNAP PA + IvRNAP PB2 + RNA + CTP
- 6f5p - IvRNAP PB1 + IvRNAP PA + IvRNAP PB2 + polyAla
- 6fhh - IvRNAP PB1 + IvRNAP PA + IvRNAP PB2 + POL II peptide
- 6qpf, 6qnw, 5d98, 5d9a - IvRNAP PB1 + IvRNAP PA + IvRNAP PB2
- Poly(A) RNA polymerase see Poly(A) RNA polymerase
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